Index: Makefile =================================================================== --- Makefile (nonexistent) +++ Makefile (working copy) @@ -0,0 +1,26 @@ +# Created by: Motomichi Matsuzaki +# $FreeBSD$ + +PORTNAME= exonerate +PORTVERSION= 2.4.0 +CATEGORIES= biology +MASTER_SITES= http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/ + +MAINTAINER= mzaki@niid.go.jp +COMMENT= Generic tool for sequence alignment + +LICENSE= GPLv3 + +GNU_CONFIGURE= yes + +USES= gnome pkgconfig +USE_GNOME= glib20 + +MAKE_JOBS_UNSAFE= yes +TEST_TARGET= check + +OPTIONS_DEFINE= TEST + +post-build-TEST-on: do-test + +.include Property changes on: Makefile ___________________________________________________________________ Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:keywords ## -0,0 +1 ## +FreeBSD=%H \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: distinfo =================================================================== --- distinfo (nonexistent) +++ distinfo (working copy) @@ -0,0 +1,3 @@ +TIMESTAMP = 1529394154 +SHA256 (exonerate-2.4.0.tar.gz) = f849261dc7c97ef1f15f222e955b0d3daf994ec13c9db7766f1ac7e77baa4042 +SIZE (exonerate-2.4.0.tar.gz) = 520899 Property changes on: distinfo ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: pkg-descr =================================================================== --- pkg-descr (nonexistent) +++ pkg-descr (working copy) @@ -0,0 +1,10 @@ +Exonerate is a tool for various types of pairwise sequence comparison. +It allows us to align sequences using many alignment models including +est2genome, protein2genome, and so on. + +Citation: + +Slater, G. S. C. and Birney, E. (2005) Automated generation of heuristics +for biological sequence comparison. BMC Bioinformatics 6:31. + +WWW: https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate Property changes on: pkg-descr ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: pkg-plist =================================================================== --- pkg-plist (nonexistent) +++ pkg-plist (working copy) @@ -0,0 +1,31 @@ +bin/exonerate +bin/ipcress +bin/exonerate-server +bin/fastaclean +bin/fastaclip +bin/fastachecksum +bin/fastacomposition +bin/fastadiff +bin/fastaexplode +bin/fastafetch +bin/fastahardmask +bin/fastaindex +bin/fastalength +bin/fastanrdb +bin/fastaoverlap +bin/fastareformat +bin/fastaremove +bin/fastarevcomp +bin/fastasoftmask +bin/fastasort +bin/fastasplit +bin/fastasubseq +bin/fastatranslate +bin/fastavalidcds +bin/fasta2esd +bin/fastaannotatecdna +bin/esd2esi +man/man1/exonerate-server.1.gz +man/man1/fastautils.1.gz +man/man1/exonerate.1.gz +man/man1/ipcress.1.gz Property changes on: pkg-plist ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property