View | Details | Raw Unified | Return to bug 229180
Collapse All | Expand All

(-)Makefile (+26 lines)
Line 0 Link Here
1
# Created by: Motomichi Matsuzaki <mzaki@niid.go.jp>
2
# $FreeBSD$
3
4
PORTNAME=	exonerate
5
PORTVERSION=	2.4.0
6
CATEGORIES=	biology
7
MASTER_SITES=	http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/
8
9
MAINTAINER=	mzaki@niid.go.jp
10
COMMENT=	Generic tool for sequence alignment
11
12
LICENSE=	GPLv3
13
14
GNU_CONFIGURE=	yes
15
16
USES=		gnome pkgconfig
17
USE_GNOME=	glib20
18
19
MAKE_JOBS_UNSAFE=	yes
20
TEST_TARGET=	check
21
22
OPTIONS_DEFINE=	TEST
23
24
post-build-TEST-on:	do-test
25
26
.include <bsd.port.mk>
(-)distinfo (+3 lines)
Line 0 Link Here
1
TIMESTAMP = 1529394154
2
SHA256 (exonerate-2.4.0.tar.gz) = f849261dc7c97ef1f15f222e955b0d3daf994ec13c9db7766f1ac7e77baa4042
3
SIZE (exonerate-2.4.0.tar.gz) = 520899
(-)pkg-descr (+10 lines)
Line 0 Link Here
1
Exonerate is a tool for various types of pairwise sequence comparison.
2
It allows us to align sequences using many alignment models including
3
est2genome, protein2genome, and so on.
4
5
Citation:
6
7
Slater, G. S. C. and Birney, E. (2005) Automated generation of heuristics
8
for biological sequence comparison. BMC Bioinformatics 6:31.
9
10
WWW: https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate
(-)pkg-plist (+31 lines)
Line 0 Link Here
1
bin/exonerate
2
bin/ipcress
3
bin/exonerate-server
4
bin/fastaclean
5
bin/fastaclip
6
bin/fastachecksum
7
bin/fastacomposition
8
bin/fastadiff
9
bin/fastaexplode
10
bin/fastafetch
11
bin/fastahardmask
12
bin/fastaindex
13
bin/fastalength
14
bin/fastanrdb
15
bin/fastaoverlap
16
bin/fastareformat
17
bin/fastaremove
18
bin/fastarevcomp
19
bin/fastasoftmask
20
bin/fastasort
21
bin/fastasplit
22
bin/fastasubseq
23
bin/fastatranslate
24
bin/fastavalidcds
25
bin/fasta2esd
26
bin/fastaannotatecdna
27
bin/esd2esi
28
man/man1/exonerate-server.1.gz
29
man/man1/fastautils.1.gz
30
man/man1/exonerate.1.gz
31
man/man1/ipcress.1.gz

Return to bug 229180