Attachment #194427 for bug #229180

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# Created by: Motomichi Matsuzaki <mzaki@niid.go.jp>
# $FreeBSD$

PORTNAME=	exonerate
PORTVERSION=	2.4.0
CATEGORIES=	biology
MASTER_SITES=	http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/

MAINTAINER=	mzaki@niid.go.jp
COMMENT=	Generic tool for sequence alignment

LICENSE=	GPLv3

GNU_CONFIGURE=	yes

USES=		gnome pkgconfig
USE_GNOME=	glib20

MAKE_JOBS_UNSAFE=	yes
TEST_TARGET=	check

OPTIONS_DEFINE=	TEST

post-build-TEST-on:	do-test

.include <bsd.port.mk>

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(-)distinfo (+3 lines)
	1	TIMESTAMP = 1529394154
	2	SHA256 (exonerate-2.4.0.tar.gz) = f849261dc7c97ef1f15f222e955b0d3daf994ec13c9db7766f1ac7e77baa4042
	3	SIZE (exonerate-2.4.0.tar.gz) = 520899

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(-)pkg-descr (+10 lines)
	1	Exonerate is a tool for various types of pairwise sequence comparison.
	2	It allows us to align sequences using many alignment models including
	3	est2genome, protein2genome, and so on.
	4
	5	Citation:
	6
	7	Slater, G. S. C. and Birney, E. (2005) Automated generation of heuristics
	8	for biological sequence comparison. BMC Bioinformatics 6:31.
	9
	10	WWW: https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate




bin/exonerate
bin/ipcress
bin/exonerate-server
bin/fastaclean
bin/fastaclip
bin/fastachecksum
bin/fastacomposition
bin/fastadiff
bin/fastaexplode
bin/fastafetch
bin/fastahardmask
bin/fastaindex
bin/fastalength
bin/fastanrdb
bin/fastaoverlap
bin/fastareformat
bin/fastaremove
bin/fastarevcomp
bin/fastasoftmask
bin/fastasort
bin/fastasplit
bin/fastasubseq
bin/fastatranslate
bin/fastavalidcds
bin/fasta2esd
bin/fastaannotatecdna
bin/esd2esi
man/man1/exonerate-server.1.gz
man/man1/fastautils.1.gz
man/man1/exonerate.1.gz
man/man1/ipcress.1.gz

Return to bug 229180

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(-)Makefile (+26 lines)
	1	# Created by: Motomichi Matsuzaki <mzaki@niid.go.jp>
	2	# $FreeBSD$
	3
	4	PORTNAME= exonerate
	5	PORTVERSION= 2.4.0
	6	CATEGORIES= biology
	7	MASTER_SITES= http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/
	8
	9	MAINTAINER= mzaki@niid.go.jp
	10	COMMENT= Generic tool for sequence alignment
	11
	12	LICENSE= GPLv3
	13
	14	GNU_CONFIGURE= yes
	15
	16	USES= gnome pkgconfig
	17	USE_GNOME= glib20
	18
	19	MAKE_JOBS_UNSAFE= yes
	20	TEST_TARGET= check
	21
	22	OPTIONS_DEFINE= TEST
	23
	24	post-build-TEST-on: do-test
	25
	26	.include <bsd.port.mk>

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(-)pkg-plist (+31 lines)
	1	bin/exonerate
	2	bin/ipcress
	3	bin/exonerate-server
	4	bin/fastaclean
	5	bin/fastaclip
	6	bin/fastachecksum
	7	bin/fastacomposition
	8	bin/fastadiff
	9	bin/fastaexplode
	10	bin/fastafetch
	11	bin/fastahardmask
	12	bin/fastaindex
	13	bin/fastalength
	14	bin/fastanrdb
	15	bin/fastaoverlap
	16	bin/fastareformat
	17	bin/fastaremove
	18	bin/fastarevcomp
	19	bin/fastasoftmask
	20	bin/fastasort
	21	bin/fastasplit
	22	bin/fastasubseq
	23	bin/fastatranslate
	24	bin/fastavalidcds
	25	bin/fasta2esd
	26	bin/fastaannotatecdna
	27	bin/esd2esi
	28	man/man1/exonerate-server.1.gz
	29	man/man1/fastautils.1.gz
	30	man/man1/exonerate.1.gz
	31	man/man1/ipcress.1.gz