Attachment #198630 for bug #232690




# $FreeBSD$

PORTNAME=	pmdk
PORTVERSION=	1.4.2
CATEGORIES=	devel

MAINTAINER=	d.scott.phillips@intel.com
COMMENT=	libraries and tools to manage and access persistent memory devices

# pmdk code is BSD3CLAUSE, jemalloc is BSD2CLAUSE,
# valgrind headers are BSD4CLAUSE
LICENSE=	BSD3CLAUSE BSD2CLAUSE BSD4CLAUSE
LICENSE_COMB=	multi

ONLY_FOR_ARCHS=	aarch64 amd64

USES=		gmake pkgconfig
USE_GITHUB=	YES
GH_ACCOUNT=	pmem

BUILD_DEPENDS=	autoconf:devel/autoconf
BUILD_DEPENDS+=	bash:shells/bash
BUILD_DEPENDS+=	doxygen:devel/doxygen

LIB_DEPENDS=	libuuid.so:misc/e2fsprogs-libuuid

MAKE_ARGS=	EXTRA_CFLAGS=-Wno-error=unused-value

post-stage:
	${RM} -rf ${STAGEDIR}${PREFIX}/lib/pmdk_debug
	${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/pmempool
	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libpmem.so.1.0.0
	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libpmemblk.so.1.0.0
	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libpmemcto.so.1.0.0
	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libpmemlog.so.1.0.0
	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libpmemobj.so.1.0.0
	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libpmempool.so.1.0.0
	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libvmem.so.1.0.0
	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libvmmalloc.so.1.0.0

.include <bsd.port.mk>

Added Link Here

(-)b/devel/pmdk/distinfo (+3 lines)
1	TIMESTAMP = 1540344814
2	SHA256 (pmem-pmdk-1.4.2_GH0.tar.gz) = df7e658e75d28cd80f6d2ff7b9fc9ae2885d52f8923fdbacecfd46215115fb4c
3	SIZE (pmem-pmdk-1.4.2_GH0.tar.gz) = 3107711




--- src/Makefile.inc.orig	2018-08-16 14:29:25 UTC
+++ src/Makefile.inc
@@ -152,7 +152,7 @@ ifneq ($(TESTBUILD), 1)
 $(error "$(TESTCMD)" failed)
 endif
 
-ARCH := $(call get_arch)
+override ARCH := $(call get_arch)
 ifneq ($(ARCH), x86_64)
 ifneq ($(ARCH), aarch64)
 $(error unsupported architecture: $(ARCH))
@@ -275,7 +275,7 @@ install: all
 ifneq ($(LIBRARY_NAME),)
 	$(INSTALL) -d $(LIBS_DESTDIR)
 	$(INSTALL) -p -m 0755 $(TARGET_LIBS) $(LIBS_DESTDIR)
-	$(CP) -d $(TARGET_LINKS) $(LIBS_DESTDIR)
+	$(CP) -a $(TARGET_LINKS) $(LIBS_DESTDIR)
 endif
 
 uninstall:




--- src/common.inc.orig	2018-08-16 14:29:25 UTC
+++ src/common.inc
@@ -115,9 +115,9 @@ check_Wconversion = $(shell echo "long random(void); c
 check_librt = $(shell echo "int main() { struct timespec t; return clock_gettime(CLOCK_MONOTONIC, &t); }" |\
 	$(CC) $(CFLAGS) -x c -include time.h -o /dev/null - 2>/dev/null && echo y || echo n)
 
-install_recursive = $(shell cd $(1) && find . -type f -exec install -m $(2) -D {} $(3)/{} \;)
+install_recursive = $(shell cd $(1) && find . -type d -exec install -d $(3)/{} \; && find . -type f -exec install -m $(2) {} $(3)/{} \;)
 
-install_recursive_filter = $(shell cd $(1) && find . -type f -name "$(2)" -exec install -m $(3) -D {} $(4)/{} \;)
+install_recursive_filter = $(shell cd $(1) && find . -type d -exec install -d $(4)/{} \; && find . -type f -name "$(2)" -exec install -m $(3) {} $(4)/{} \;)
 
 define create-deps
 	@cp $(objdir)/$*.d $(objdir)/.deps/$*.P; \




--- src/common/os_posix.c.orig	2018-10-25 05:37:18 UTC
+++ src/common/os_posix.c
@@ -174,9 +174,8 @@ os_posix_fallocate(int fd, os_off_t offset, off_t len)
 		if (fstatfs(fd, &fsbuf) == -1 || fstat(fd, &fbuf) == -1)
 			return errno;
 
-		size_t reqd_blocks =
-			(((size_t)len + (fsbuf.f_bsize - 1)) / fsbuf.f_bsize)
-				- (size_t)fbuf.st_blocks;
+		size_t reqd_blocks = (((size_t)len + (fsbuf.f_bsize - 1)) / fsbuf.f_bsize);
+		reqd_blocks -= fbuf.st_blocks > reqd_blocks ? reqd_blocks : fbuf.st_blocks;
 		if (reqd_blocks > (size_t)fsbuf.f_bavail)
 			return ENOSPC;
 	}




--- src/common/queue.h.orig	2018-10-24 02:57:34 UTC
+++ src/common/queue.h
@@ -32,8 +32,8 @@
  *	@(#)queue.h	8.5 (Berkeley) 8/20/94
  */
 
-#ifndef	_SYS_QUEUE_H_
-#define	_SYS_QUEUE_H_
+#ifndef	_COPIED_GLIBC_SYS_QUEUE_H_
+#define	_COPIED_GLIBC_SYS_QUEUE_H_
 
 /*
  * This file defines five types of data structures: singly-linked lists,

Added Link Here

(-)b/devel/pmdk/files/patch-src_examples_libpmemcto_libart_Makefile (+11 lines)
1	--- src/examples/libpmemcto/libart/Makefile.orig 2018-10-24 02:45:18 UTC
2	+++ src/examples/libpmemcto/libart/Makefile
3	@@ -48,7 +48,7 @@
4
5	include ../../../common.inc
6
7	-ARCH := $(call get_arch)
8	+override ARCH := $(call get_arch)
9
10	ifeq ($(ARCH), x86_64)
11	# libart uses x86 intrinsics

Added Link Here

(-)b/devel/pmdk/files/patch-src_examples_libpmemobj_libart_Makefile (+11 lines)
1	--- src/examples/libpmemobj/libart/Makefile.orig 2018-10-24 02:45:18 UTC
2	+++ src/examples/libpmemobj/libart/Makefile
3	@@ -49,7 +49,7 @@
4
5	include ../../../common.inc
6
7	-ARCH := $(call get_arch)
8	+override ARCH := $(call get_arch)
9
10	ifeq ($(ARCH), x86_64)
11	# libart uses x86 intrinsics

Added Link Here

(-)b/devel/pmdk/files/patch-src_examples_libvmem_libart_Makefile (+11 lines)
1	--- src/examples/libvmem/libart/Makefile.orig 2018-10-24 02:45:18 UTC
2	+++ src/examples/libvmem/libart/Makefile
3	@@ -48,7 +48,7 @@
4
5	include ../../../common.inc
6
7	-ARCH := $(call get_arch)
8	+override ARCH := $(call get_arch)
9
10	ifeq ($(ARCH), x86_64)
11	# libart uses x86 intrinsics

Added Link Here

(-)b/devel/pmdk/files/patch-src_libpmem_Makefile (+11 lines)
1	--- src/libpmem/Makefile.orig 2018-10-24 02:45:18 UTC
2	+++ src/libpmem/Makefile
3	@@ -34,7 +34,7 @@
4
5	include ../common.inc
6
7	-ARCH := $(call get_arch)
8	+override ARCH := $(call get_arch)
9
10	LIBRARY_NAME = pmem
11	LIBRARY_SO_VERSION = 1

Added Link Here

(-)b/devel/pmdk/files/patch-src_test_Makefile (+11 lines)
1	--- src/test/Makefile.orig 2018-10-24 02:45:18 UTC
2	+++ src/test/Makefile
3	@@ -38,7 +38,7 @@
4
5	include ../common.inc
6
7	-ARCH := $(call get_arch)
8	+override ARCH := $(call get_arch)
9
10	TEST_DEPS = \
11	unittest\

Added Link Here

(-)b/devel/pmdk/files/patch-src_test_Makefile.inc (+11 lines)
1	--- src/test/Makefile.inc.orig 2018-10-24 02:45:18 UTC
2	+++ src/test/Makefile.inc
3	@@ -40,7 +40,7 @@
4	TOP := $(dir $(lastword $(MAKEFILE_LIST)))../..
5
6	include $(TOP)/src/common.inc
7	-ARCH := $(call get_arch)
8	+override ARCH := $(call get_arch)
9	include $(TOP)/src/libpmem/$(ARCH)/sources.inc
10
11	INCS += $(OS_INCS)

Added Link Here

(-)b/devel/pmdk/files/patch-src_test_pmem__deep__persist_Makefile (+11 lines)
1	--- src/test/pmem_deep_persist/Makefile.orig 2018-10-24 02:45:18 UTC
2	+++ src/test/pmem_deep_persist/Makefile
3	@@ -34,7 +34,7 @@
4	# src/test/pmem_deep_persist/Makefile -- build pmem_deep_persist test
5	#
6	include ../../common.inc
7	-ARCH := $(call get_arch)
8	+override ARCH := $(call get_arch)
9
10	TOP = ../../..
11	vpath %.c $(TOP)/src/common

Added Link Here

(-)b/devel/pmdk/files/patch-src_test_pmem__is__pmem__posix_Makefile (+11 lines)
1	--- src/test/pmem_is_pmem_posix/Makefile.orig 2018-10-24 02:45:18 UTC
2	+++ src/test/pmem_is_pmem_posix/Makefile
3	@@ -34,7 +34,7 @@
4	# src/test/pmem_is_pmem_posix/Makefile -- build pmem_is_pmem_posix unit test
5	#
6	include ../../common.inc
7	-ARCH := $(call get_arch)
8	+override ARCH := $(call get_arch)
9	TOP = ../../..
10	vpath %.c $(TOP)/src/common
11	vpath %.c $(TOP)/src/libpmem

Added Link Here

(-)b/devel/pmdk/pkg-descr (+4 lines)
1	The Persistent Memory Development Kit (PMDK) is a collection of
2	libraries and tools for System Administrators and Application
3	Developers to simplify managing and accessing persistent memory
4	devices. For more information, see http://pmem.io.

Added Link Here

(-)b/devel/pmdk/pkg-message (+2 lines)
1	pmdk requires procfs(5). Add this line to your fstab(5):
2	proc /proc procfs rw 0 0




bin/pmempool
etc/bash_completion.d/pmempool
include/libpmem.h
include/libpmemblk.h
include/libpmemcto.h
include/libpmemlog.h
include/libpmemobj++/allocator.hpp
include/libpmemobj++/condition_variable.hpp
include/libpmemobj++/detail/array_traits.hpp
include/libpmemobj++/detail/check_persistent_ptr_array.hpp
include/libpmemobj++/detail/common.hpp
include/libpmemobj++/detail/conversions.hpp
include/libpmemobj++/detail/integer_sequence.hpp
include/libpmemobj++/detail/life.hpp
include/libpmemobj++/detail/make_atomic_impl.hpp
include/libpmemobj++/detail/persistent_ptr_base.hpp
include/libpmemobj++/detail/pexceptions.hpp
include/libpmemobj++/detail/specialization.hpp
include/libpmemobj++/make_persistent.hpp
include/libpmemobj++/make_persistent_array.hpp
include/libpmemobj++/make_persistent_array_atomic.hpp
include/libpmemobj++/make_persistent_atomic.hpp
include/libpmemobj++/mutex.hpp
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include/libpmemobj++/persistent_ptr.hpp
include/libpmemobj++/pext.hpp
include/libpmemobj++/pool.hpp
include/libpmemobj++/shared_mutex.hpp
include/libpmemobj++/timed_mutex.hpp
include/libpmemobj++/transaction.hpp
include/libpmemobj++/utils.hpp
include/libpmemobj.h
include/libpmemobj/action.h
include/libpmemobj/action_base.h
include/libpmemobj/atomic.h
include/libpmemobj/atomic_base.h
include/libpmemobj/base.h
include/libpmemobj/ctl.h
include/libpmemobj/iterator.h
include/libpmemobj/iterator_base.h
include/libpmemobj/lists_atomic.h
include/libpmemobj/lists_atomic_base.h
include/libpmemobj/pool.h
include/libpmemobj/pool_base.h
include/libpmemobj/thread.h
include/libpmemobj/tx.h
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include/libpmemobj/types.h
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include/libvmem.h
include/libvmmalloc.h
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lib/libpmempool.a
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lib/libpmempool.so.1.0.0
lib/libvmem.a
lib/libvmem.so
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lib/libvmem.so.1.0.0
lib/libvmmalloc.a
lib/libvmmalloc.so
lib/libvmmalloc.so.1
lib/libvmmalloc.so.1.0.0
libdata/pkgconfig/libpmem.pc
libdata/pkgconfig/libpmemblk.pc
libdata/pkgconfig/libpmemcto.pc
libdata/pkgconfig/libpmemlog.pc
libdata/pkgconfig/libpmemobj++.pc
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libdata/pkgconfig/libvmem.pc
libdata/pkgconfig/libvmmalloc.pc
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share/man/man3/toid_is_null.3.gz
share/man/man3/toid_offsetof.3.gz
share/man/man3/toid_type_num.3.gz
share/man/man3/toid_type_num_of.3.gz
share/man/man3/toid_typeof.3.gz
share/man/man3/toid_valid.3.gz
share/man/man3/tx_add.3.gz
share/man/man3/tx_add_direct.3.gz
share/man/man3/tx_add_field.3.gz
share/man/man3/tx_add_field_direct.3.gz
share/man/man3/tx_alloc.3.gz
share/man/man3/tx_begin.3.gz
share/man/man3/tx_begin_cb.3.gz
share/man/man3/tx_begin_param.3.gz
share/man/man3/tx_end.3.gz
share/man/man3/tx_finally.3.gz
share/man/man3/tx_free.3.gz
share/man/man3/tx_memcpy.3.gz
share/man/man3/tx_memset.3.gz
share/man/man3/tx_new.3.gz
share/man/man3/tx_onabort.3.gz
share/man/man3/tx_oncommit.3.gz
share/man/man3/tx_realloc.3.gz
share/man/man3/tx_set.3.gz
share/man/man3/tx_set_direct.3.gz
share/man/man3/tx_strdup.3.gz
share/man/man3/tx_wcsdup.3.gz
share/man/man3/tx_xadd.3.gz
share/man/man3/tx_xadd_direct.3.gz
share/man/man3/tx_xadd_field.3.gz
share/man/man3/tx_xadd_field_direct.3.gz
share/man/man3/tx_xalloc.3.gz
share/man/man3/tx_zalloc.3.gz
share/man/man3/tx_znew.3.gz
share/man/man3/tx_zrealloc.3.gz
share/man/man3/vmem_aligned_alloc.3.gz
share/man/man3/vmem_calloc.3.gz
share/man/man3/vmem_check.3.gz
share/man/man3/vmem_check_version.3.gz
share/man/man3/vmem_create.3.gz
share/man/man3/vmem_create_in_region.3.gz
share/man/man3/vmem_delete.3.gz
share/man/man3/vmem_errormsg.3.gz
share/man/man3/vmem_free.3.gz
share/man/man3/vmem_malloc.3.gz
share/man/man3/vmem_malloc_usable_size.3.gz
share/man/man3/vmem_realloc.3.gz
share/man/man3/vmem_set_funcs.3.gz
share/man/man3/vmem_stats_print.3.gz
share/man/man3/vmem_strdup.3.gz
share/man/man3/vmem_wcsdup.3.gz
share/man/man5/poolset.5.gz
share/man/man7/libpmem.7.gz
share/man/man7/libpmemblk.7.gz
share/man/man7/libpmemcto.7.gz
share/man/man7/libpmemlog.7.gz
share/man/man7/libpmemobj.7.gz
share/man/man7/libpmempool.7.gz
share/man/man7/libvmem.7.gz
share/man/man7/libvmmalloc.7.gz

Return to bug 232690

Added Link Here

(-)b/devel/pmdk/Makefile (+41 lines)
1	# $FreeBSD$
2
3	PORTNAME= pmdk
4	PORTVERSION= 1.4.2
5	CATEGORIES= devel
6
7	MAINTAINER= d.scott.phillips@intel.com
8	COMMENT= libraries and tools to manage and access persistent memory devices
9
10	# pmdk code is BSD3CLAUSE, jemalloc is BSD2CLAUSE,
11	# valgrind headers are BSD4CLAUSE
12	LICENSE= BSD3CLAUSE BSD2CLAUSE BSD4CLAUSE
13	LICENSE_COMB= multi
14
15	ONLY_FOR_ARCHS= aarch64 amd64
16
17	USES= gmake pkgconfig
18	USE_GITHUB= YES
19	GH_ACCOUNT= pmem
20
21	BUILD_DEPENDS= autoconf:devel/autoconf
22	BUILD_DEPENDS+= bash:shells/bash
23	BUILD_DEPENDS+= doxygen:devel/doxygen
24
25	LIB_DEPENDS= libuuid.so:misc/e2fsprogs-libuuid
26
27	MAKE_ARGS= EXTRA_CFLAGS=-Wno-error=unused-value
28
29	post-stage:
30	${RM} -rf ${STAGEDIR}${PREFIX}/lib/pmdk_debug
31	${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/pmempool
32	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libpmem.so.1.0.0
33	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libpmemblk.so.1.0.0
34	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libpmemcto.so.1.0.0
35	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libpmemlog.so.1.0.0
36	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libpmemobj.so.1.0.0
37	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libpmempool.so.1.0.0
38	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libvmem.so.1.0.0
39	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libvmmalloc.so.1.0.0
40
41	.include <bsd.port.mk>

Added Link Here

(-)b/devel/pmdk/files/patch-src_Makefile.inc (+20 lines)
1	--- src/Makefile.inc.orig 2018-08-16 14:29:25 UTC
2	+++ src/Makefile.inc
3	@@ -152,7 +152,7 @@ ifneq ($(TESTBUILD), 1)
4	$(error "$(TESTCMD)" failed)
5	endif
6
7	-ARCH := $(call get_arch)
8	+override ARCH := $(call get_arch)
9	ifneq ($(ARCH), x86_64)
10	ifneq ($(ARCH), aarch64)
11	$(error unsupported architecture: $(ARCH))
12	@@ -275,7 +275,7 @@ install: all
13	ifneq ($(LIBRARY_NAME),)
14	$(INSTALL) -d $(LIBS_DESTDIR)
15	$(INSTALL) -p -m 0755 $(TARGET_LIBS) $(LIBS_DESTDIR)
16	- $(CP) -d $(TARGET_LINKS) $(LIBS_DESTDIR)
17	+ $(CP) -a $(TARGET_LINKS) $(LIBS_DESTDIR)
18	endif
19
20	uninstall:

Added Link Here

(-)b/devel/pmdk/files/patch-src_common.inc (+14 lines)
1	--- src/common.inc.orig 2018-08-16 14:29:25 UTC
2	+++ src/common.inc
3	@@ -115,9 +115,9 @@ check_Wconversion = $(shell echo "long random(void); c
4	check_librt = $(shell echo "int main() { struct timespec t; return clock_gettime(CLOCK_MONOTONIC, &t); }" \|\
5	$(CC) $(CFLAGS) -x c -include time.h -o /dev/null - 2>/dev/null && echo y \|\| echo n)
6
7	-install_recursive = $(shell cd $(1) && find . -type f -exec install -m $(2) -D {} $(3)/{} \;)
8	+install_recursive = $(shell cd $(1) && find . -type d -exec install -d $(3)/{} \; && find . -type f -exec install -m $(2) {} $(3)/{} \;)
9
10	-install_recursive_filter = $(shell cd $(1) && find . -type f -name "$(2)" -exec install -m $(3) -D {} $(4)/{} \;)
11	+install_recursive_filter = $(shell cd $(1) && find . -type d -exec install -d $(4)/{} \; && find . -type f -name "$(2)" -exec install -m $(3) {} $(4)/{} \;)
12
13	define create-deps
14	@cp $(objdir)/$.d $(objdir)/.deps/$.P; \

Added Link Here

(-)b/devel/pmdk/files/patch-src_common_os__posix.c (+14 lines)
1	--- src/common/os_posix.c.orig 2018-10-25 05:37:18 UTC
2	+++ src/common/os_posix.c
3	@@ -174,9 +174,8 @@ os_posix_fallocate(int fd, os_off_t offset, off_t len)
4	if (fstatfs(fd, &fsbuf) == -1 \|\| fstat(fd, &fbuf) == -1)
5	return errno;
6
7	- size_t reqd_blocks =
8	- (((size_t)len + (fsbuf.f_bsize - 1)) / fsbuf.f_bsize)
9	- - (size_t)fbuf.st_blocks;
10	+ size_t reqd_blocks = (((size_t)len + (fsbuf.f_bsize - 1)) / fsbuf.f_bsize);
11	+ reqd_blocks -= fbuf.st_blocks > reqd_blocks ? reqd_blocks : fbuf.st_blocks;
12	if (reqd_blocks > (size_t)fsbuf.f_bavail)
13	return ENOSPC;
14	}

Added Link Here

(-)b/devel/pmdk/files/patch-src_common_queue.h (+13 lines)
1	--- src/common/queue.h.orig 2018-10-24 02:57:34 UTC
2	+++ src/common/queue.h
3	@@ -32,8 +32,8 @@
4	* @(#)queue.h 8.5 (Berkeley) 8/20/94
5	*/
6
7	-#ifndef _SYS_QUEUE_H_
8	-#define _SYS_QUEUE_H_
9	+#ifndef _COPIED_GLIBC_SYS_QUEUE_H_
10	+#define _COPIED_GLIBC_SYS_QUEUE_H_
11
12	/*
13	* This file defines five types of data structures: singly-linked lists,