Attachment 208006 Details for Bug 240996 – PETSc-3.12.0.patch

[patch] PETSc-3.12.0.patch

PETSc-3.12.0.patch (text/plain), 8.86 KB, created by takefu on 2019-10-02 07:59:28 UTC

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Creator: takefu

Created: 2019-10-02 07:59:28 UTC

Size: 8.86 KB

patch

obsolete

>diff -udprN /usr/ports/science/PETSc/distinfo ./distinfo
>--- /usr/ports/science/PETSc/distinfo	2018-10-20 16:08:58.631171000 +0000
>+++ ./distinfo	2019-10-01 01:26:59.913823000 +0000
>@@ -1,3 +1,3 @@
>-TIMESTAMP = 1540050650
>-SHA256 (petsc-3.10.2.tar.gz) = 9d3381bcf9c63abe6521b21a88efc70f8e893293503cff497971d0d9c1ec68cc
>-SIZE (petsc-3.10.2.tar.gz) = 31083036
>+TIMESTAMP = 1569893219
>+SHA256 (petsc-3.12.0.tar.gz) = ba9ecf69783c7ebf05bd1c91dd1d4b38bf09b7a2d5f9a774aa6bb46deff7cb14
>+SIZE (petsc-3.12.0.tar.gz) = 34559998
>diff -udprN /usr/ports/science/PETSc/Makefile ./Makefile
>--- /usr/ports/science/PETSc/Makefile	2019-09-15 10:39:17.159119000 +0000
>+++ ./Makefile	2019-10-01 23:29:15.190669000 +0000
>@@ -2,8 +2,7 @@
> # $FreeBSD: head/science/PETSc/Makefile 512096 2019-09-15 10:39:17Z pkubaj $
> 
> PORTNAME=	PETSc
>-DISTVERSION=	3.10.2
>-PORTREVISION=	3
>+DISTVERSION=	3.12.0
> CATEGORIES=	science devel
> MASTER_SITES=	http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/
> DISTNAME=	${PORTNAME:tl}-${DISTVERSION}
>@@ -16,7 +15,7 @@ LICENSE_FILE=	${WRKSRC}/LICENSE
> 
> LIB_DEPENDS=	libmpich.so:net/mpich
> 
>-USES=		blaslapack fortran gmake python:2.7 shebangfix
>+USES=		blaslapack fortran gmake python:2.7 shebangfix xorg
> GNU_CONFIGURE=	yes
> CONFIGURE_ARGS=	--with-shared-libraries=1 \
> 		--with-mpi-dir=${LOCALBASE} \
>@@ -26,7 +25,9 @@ CONFIGURE_ARGS_amd64=	CFLAGS="${CFLAGS} 
> CONFIGURE_ARGS_i386=	CFLAGS="${CFLAGS} -msse2" CXXFLAGS="${CXXFLAGS} -msse2"
> USE_XORG=	x11
> MAKEFILE=	makefile
>-SHEBANG_FILES=	lib/petsc/bin/*.py lib/petsc/bin/saws/SAWs.py lib/petsc/bin/saws/*.bash config/*.py
>+SHEBANG_FILES=	lib/petsc/bin/*.py lib/petsc/bin/saws/SAWs.py\
>+		lib/petsc/bin/saws/*.bash config/*.py\
>+		lib/petsc/bin/petsc-performance-view lib/petsc/bin/petscnagfor
> USE_LDCONFIG=	yes
> TEST_TARGET=	test
> BINARY_ALIAS=	python=${PYTHON_CMD}
>diff -udprN /usr/ports/science/PETSc/pkg-descr ./pkg-descr
>--- /usr/ports/science/PETSc/pkg-descr	2017-12-21 00:26:58.894355000 +0000
>+++ ./pkg-descr	2019-10-02 07:51:13.885526000 +0000
>@@ -4,4 +4,4 @@ MPI, and GPUs through CUDA or OpenCL, as
> PETSc (sometimes called PETSc/Tao) also contains the Tao optimization software
> library.
> 
>-WWW: http://www.mcs.anl.gov/petsc
>+WWW: https://www.mcs.anl.gov/petsc/
>diff -udprN /usr/ports/science/PETSc/pkg-plist ./pkg-plist
>--- /usr/ports/science/PETSc/pkg-plist	2018-10-02 23:11:15.498144000 +0000
>+++ ./pkg-plist	2019-10-02 00:38:37.816739000 +0000
>@@ -34,6 +34,8 @@ include/petsc/private/dmmbimpl.h
> include/petsc/private/dmnetworkimpl.h
> include/petsc/private/dmpatchimpl.h
> include/petsc/private/dmpleximpl.h
>+include/petsc/private/dmproductimpl.h
>+include/petsc/private/dmstagimpl.h
> include/petsc/private/dmswarmimpl.h
> include/petsc/private/drawimpl.h
> include/petsc/private/dtimpl.h
>@@ -44,6 +46,7 @@ include/petsc/private/glvisviewerimpl.h
> include/petsc/private/hashmap.h
> include/petsc/private/hashmapi.h
> include/petsc/private/hashmapij.h
>+include/petsc/private/hashmapiv.h
> include/petsc/private/hashset.h
> include/petsc/private/hashseti.h
> include/petsc/private/hashsetij.h
>@@ -68,16 +71,21 @@ include/petsc/private/petscdsimpl.h
> include/petsc/private/petscfeimpl.h
> include/petsc/private/petscfptimpl.h
> include/petsc/private/petscfvimpl.h
>+include/petsc/private/petschpddm.h
>+include/petsc/private/petschypre.h
> include/petsc/private/petscimpl.h
>+include/petsc/private/sectionimpl.h
> include/petsc/private/sfimpl.h
> include/petsc/private/snesimpl.h
> include/petsc/private/taoimpl.h
> include/petsc/private/taolinesearchimpl.h
>+include/petsc/private/tshistoryimpl.h
> include/petsc/private/tsimpl.h
> include/petsc/private/vecimpl.h
> include/petsc/private/vecscatterimpl.h
> include/petsc/private/vieweradios2impl.h
> include/petsc/private/vieweradiosimpl.h
>+include/petsc/private/viewerhdf5impl.h
> include/petsc/private/viewerimpl.h
> include/petscao.h
> include/petscao.mod
>@@ -92,7 +100,8 @@ include/petscconf.h
> include/petscconfiginfo.h
> include/petscconvest.h
> include/petscctable.h
>-include/petsccuda.h
>+include/petsccublas.h
>+include/petsccxxcomplexfix.h
> include/petscdef.mod
> include/petscdm.h
> include/petscdm.mod
>@@ -121,9 +130,12 @@ include/petscdmpatchdef.mod
> include/petscdmplex.h
> include/petscdmplex.mod
> include/petscdmplexdef.mod
>+include/petscdmplextypes.h
>+include/petscdmproduct.h
> include/petscdmredundant.h
> include/petscdmshell.h
> include/petscdmsliced.h
>+include/petscdmstag.h
> include/petscdmswarm.h
> include/petscdmtypes.h
> include/petscdraw.h
>@@ -138,7 +150,6 @@ include/petscfetypes.h
> include/petscfix.h
> include/petscfv.h
> include/petscfvtypes.h
>-include/petscgll.h
> include/petscis.h
> include/petscis.mod
> include/petscisdef.mod
>@@ -148,6 +159,7 @@ include/petscksp.h
> include/petscksp.mod
> include/petsckspdef.mod
> include/petsckspdefdummy.mod
>+include/petsclayouthdf5.h
> include/petsclog.h
> include/petscmachineinfo.h
> include/petscmat.h
>@@ -166,6 +178,9 @@ include/petscpcdef.mod
> include/petscpcdefdummy.mod
> include/petscpctypes.h
> include/petscpf.h
>+include/petscpkg_version.h
>+include/petscsection.h
>+include/petscsectiontypes.h
> include/petscsf.h
> include/petscsftypes.h
> include/petscsnes.h
>@@ -176,6 +191,7 @@ include/petscsys.h
> include/petscsys.mod
> include/petscsysdef.mod
> include/petscsysdefdummy.mod
>+include/petscsystypes.h
> include/petsctao.h
> include/petsctao.mod
> include/petsctaodef.mod
>@@ -203,17 +219,23 @@ lib/libpetsc.so.%%SHLIB%%
> lib/petsc/bin/PetscBinaryIO.py
> lib/petsc/bin/PetscBinaryIOTrajectory.py
> lib/petsc/bin/PetscBinaryIO_tests.py
>+lib/petsc/bin/configureTAS.py
>+lib/petsc/bin/extract.py
> lib/petsc/bin/petsc_conf.py
> lib/petsc/bin/petsc_gen_xdmf.py
>+lib/petsc/bin/petsc_tas_analysis.py
>+lib/petsc/bin/petsc_tas_style.mplstyle
>+lib/petsc/bin/petsc-performance-view
> lib/petsc/bin/petscdiff
> lib/petsc/bin/petsclogformat.py
> lib/petsc/bin/petscmpiexec
>+lib/petsc/bin/petscnagfor
> lib/petsc/bin/petscnagupgrade.py
> lib/petsc/bin/saws/SAWs.py
> lib/petsc/bin/saws/getSAWs.bash
> lib/petsc/bin/saws/getStack.bash
> lib/petsc/bin/taucc.py
>-lib/petsc/conf/PETScBuildInternal.cmake
>+lib/petsc/conf/configure-hash
> lib/petsc/conf/modules/petsc/%%SHLIB%%
> lib/petsc/conf/petscrules
> lib/petsc/conf/petscvariables
>@@ -223,11 +245,14 @@ lib/petsc/conf/test
> lib/petsc/conf/test.common
> lib/petsc/conf/variables
> libdata/pkgconfig/PETSc.pc
>+%%DATADIR%%/Makefile.user
> %%DATADIR%%/datafiles/matrices/amesos2_test_mat0.mtx
> %%DATADIR%%/datafiles/matrices/hpd-complex-int32-float32
> %%DATADIR%%/datafiles/matrices/hpd-complex-int32-float64
> %%DATADIR%%/datafiles/matrices/hpd-complex-int64-float32
> %%DATADIR%%/datafiles/matrices/hpd-complex-int64-float64
>+%%DATADIR%%/datafiles/matrices/LFAT5.mtx
>+%%DATADIR%%/datafiles/matrices/m_05_05_crk.mtx
> %%DATADIR%%/datafiles/matrices/nh-complex-int32-float32
> %%DATADIR%%/datafiles/matrices/nh-complex-int32-float64
> %%DATADIR%%/datafiles/matrices/nh-complex-int64-float32
>@@ -243,6 +268,8 @@ libdata/pkgconfig/PETSc.pc
> %%DATADIR%%/datafiles/matrices/spd-real-int64-float64
> %%DATADIR%%/datafiles/matrices/tiny_system
> %%DATADIR%%/datafiles/matrices/tiny_system_with_x0
>+%%DATADIR%%/datafiles/matrices/tiny_system_with_x0_complex.mat
>+%%DATADIR%%/datafiles/matrices/tiny_system_with_x0.mat
> %%DATADIR%%/datafiles/matrices/tiny_system_x0
> %%DATADIR%%/datafiles/meshes/2Dgrd.exo
> %%DATADIR%%/datafiles/meshes/FourBrickHex-large.exo
>@@ -253,20 +280,33 @@ libdata/pkgconfig/PETSc.pc
> %%DATADIR%%/datafiles/meshes/Rect-tri3.exo
> %%DATADIR%%/datafiles/meshes/TwoQuads.exo
> %%DATADIR%%/datafiles/meshes/annulus-20.exo
>+%%DATADIR%%/datafiles/meshes/barycentricallyrefinedcube.h5
> %%DATADIR%%/datafiles/meshes/blockcylinder-50.exo
> %%DATADIR%%/datafiles/meshes/blockcylinder-50.h5
> %%DATADIR%%/datafiles/meshes/blockcylinder-50.xmf
> %%DATADIR%%/datafiles/meshes/cow.msh
> %%DATADIR%%/datafiles/meshes/cube_5tets.cas
> %%DATADIR%%/datafiles/meshes/cube_5tets_ascii.cas
>-%%DATADIR%%/datafiles/meshes/cube_periodic.msh
>-%%DATADIR%%/datafiles/meshes/cube_periodic_bin.msh
> %%DATADIR%%/datafiles/meshes/cylinder.med
> %%DATADIR%%/datafiles/meshes/doublet-tet.msh
>+%%DATADIR%%/datafiles/meshes/gmsh-3d-ascii-32.msh
>+%%DATADIR%%/datafiles/meshes/gmsh-3d-ascii-64.msh
>+%%DATADIR%%/datafiles/meshes/gmsh-3d-ascii.msh2
>+%%DATADIR%%/datafiles/meshes/gmsh-3d-ascii.msh4
>+%%DATADIR%%/datafiles/meshes/gmsh-3d-binary-32.msh
>+%%DATADIR%%/datafiles/meshes/gmsh-3d-binary-64.msh
>+%%DATADIR%%/datafiles/meshes/gmsh-3d-binary.msh2
>+%%DATADIR%%/datafiles/meshes/gmsh-3d-binary.msh4
>+%%DATADIR%%/datafiles/meshes/gmsh-3d.geo
> %%DATADIR%%/datafiles/meshes/grid_c.cgns
> %%DATADIR%%/datafiles/meshes/horse.ply.bz2
>+%%DATADIR%%/datafiles/meshes/hybrid_3d_cube.msh
>+%%DATADIR%%/datafiles/meshes/hybrid_hexwedge.exo
>+%%DATADIR%%/datafiles/meshes/hybrid_hexwedge.msh
> %%DATADIR%%/datafiles/meshes/hybrid_tetwedge.msh
> %%DATADIR%%/datafiles/meshes/hybrid_triquad.msh
>+%%DATADIR%%/datafiles/meshes/mesh-3d-box-innersphere_bin.msh
>+%%DATADIR%%/datafiles/meshes/mesh-3d-box-innersphere.msh
> %%DATADIR%%/datafiles/meshes/sevenside-quad-15.exo
> %%DATADIR%%/datafiles/meshes/sevenside-quad.exo
> %%DATADIR%%/datafiles/meshes/sevenside.exo

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Attachments on bug 240996: 208006 | 208691