FreeBSD Bugzilla – Attachment 208691 Details for
Bug 240996
science/PETSc: Update to 3.12.1
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[patch]
PETSc-3.12.1.patch
PETSc-3.12.1.patch (text/plain), 8.86 KB, created by
takefu
on 2019-10-30 05:16:59 UTC
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Description:
PETSc-3.12.1.patch
Filename:
MIME Type:
Creator:
takefu
Created:
2019-10-30 05:16:59 UTC
Size:
8.86 KB
patch
obsolete
>diff -udprN /usr/ports/science/PETSc/distinfo ./distinfo >--- /usr/ports/science/PETSc/distinfo 2018-10-20 16:08:58.631171000 +0000 >+++ ./distinfo 2019-10-29 07:33:01.314629000 +0000 >@@ -1,3 +1,3 @@ >-TIMESTAMP = 1540050650 >-SHA256 (petsc-3.10.2.tar.gz) = 9d3381bcf9c63abe6521b21a88efc70f8e893293503cff497971d0d9c1ec68cc >-SIZE (petsc-3.10.2.tar.gz) = 31083036 >+TIMESTAMP = 1572334381 >+SHA256 (petsc-3.12.1.tar.gz) = b72d895d0f4a79acb13ebc782b47b26d10d4e5706d399f533afcd5b3dba13737 >+SIZE (petsc-3.12.1.tar.gz) = 34592587 >diff -udprN /usr/ports/science/PETSc/Makefile ./Makefile >--- /usr/ports/science/PETSc/Makefile 2019-09-15 10:39:17.159119000 +0000 >+++ ./Makefile 2019-10-29 07:28:29.100593000 +0000 >@@ -2,8 +2,7 @@ > # $FreeBSD: head/science/PETSc/Makefile 512096 2019-09-15 10:39:17Z pkubaj $ > > PORTNAME= PETSc >-DISTVERSION= 3.10.2 >-PORTREVISION= 3 >+DISTVERSION= 3.12.1 > CATEGORIES= science devel > MASTER_SITES= http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/ > DISTNAME= ${PORTNAME:tl}-${DISTVERSION} >@@ -16,7 +15,7 @@ LICENSE_FILE= ${WRKSRC}/LICENSE > > LIB_DEPENDS= libmpich.so:net/mpich > >-USES= blaslapack fortran gmake python:2.7 shebangfix >+USES= blaslapack fortran gmake python:2.7 shebangfix xorg > GNU_CONFIGURE= yes > CONFIGURE_ARGS= --with-shared-libraries=1 \ > --with-mpi-dir=${LOCALBASE} \ >@@ -26,7 +25,9 @@ CONFIGURE_ARGS_amd64= CFLAGS="${CFLAGS} > CONFIGURE_ARGS_i386= CFLAGS="${CFLAGS} -msse2" CXXFLAGS="${CXXFLAGS} -msse2" > USE_XORG= x11 > MAKEFILE= makefile >-SHEBANG_FILES= lib/petsc/bin/*.py lib/petsc/bin/saws/SAWs.py lib/petsc/bin/saws/*.bash config/*.py >+SHEBANG_FILES= lib/petsc/bin/*.py lib/petsc/bin/saws/SAWs.py\ >+ lib/petsc/bin/saws/*.bash config/*.py\ >+ lib/petsc/bin/petsc-performance-view lib/petsc/bin/petscnagfor > USE_LDCONFIG= yes > TEST_TARGET= test > BINARY_ALIAS= python=${PYTHON_CMD} >diff -udprN /usr/ports/science/PETSc/pkg-descr ./pkg-descr >--- /usr/ports/science/PETSc/pkg-descr 2017-12-21 00:26:58.894355000 +0000 >+++ ./pkg-descr 2019-10-07 04:14:32.809478000 +0000 >@@ -4,4 +4,4 @@ MPI, and GPUs through CUDA or OpenCL, as > PETSc (sometimes called PETSc/Tao) also contains the Tao optimization software > library. > >-WWW: http://www.mcs.anl.gov/petsc >+WWW: https://www.mcs.anl.gov/petsc/ >diff -udprN /usr/ports/science/PETSc/pkg-plist ./pkg-plist >--- /usr/ports/science/PETSc/pkg-plist 2018-10-02 23:11:15.498144000 +0000 >+++ ./pkg-plist 2019-10-29 07:47:31.338242000 +0000 >@@ -34,6 +34,8 @@ include/petsc/private/dmmbimpl.h > include/petsc/private/dmnetworkimpl.h > include/petsc/private/dmpatchimpl.h > include/petsc/private/dmpleximpl.h >+include/petsc/private/dmproductimpl.h >+include/petsc/private/dmstagimpl.h > include/petsc/private/dmswarmimpl.h > include/petsc/private/drawimpl.h > include/petsc/private/dtimpl.h >@@ -44,6 +46,7 @@ include/petsc/private/glvisviewerimpl.h > include/petsc/private/hashmap.h > include/petsc/private/hashmapi.h > include/petsc/private/hashmapij.h >+include/petsc/private/hashmapiv.h > include/petsc/private/hashset.h > include/petsc/private/hashseti.h > include/petsc/private/hashsetij.h >@@ -68,16 +71,21 @@ include/petsc/private/petscdsimpl.h > include/petsc/private/petscfeimpl.h > include/petsc/private/petscfptimpl.h > include/petsc/private/petscfvimpl.h >+include/petsc/private/petschpddm.h >+include/petsc/private/petschypre.h > include/petsc/private/petscimpl.h >+include/petsc/private/sectionimpl.h > include/petsc/private/sfimpl.h > include/petsc/private/snesimpl.h > include/petsc/private/taoimpl.h > include/petsc/private/taolinesearchimpl.h >+include/petsc/private/tshistoryimpl.h > include/petsc/private/tsimpl.h > include/petsc/private/vecimpl.h > include/petsc/private/vecscatterimpl.h > include/petsc/private/vieweradios2impl.h > include/petsc/private/vieweradiosimpl.h >+include/petsc/private/viewerhdf5impl.h > include/petsc/private/viewerimpl.h > include/petscao.h > include/petscao.mod >@@ -92,7 +100,8 @@ include/petscconf.h > include/petscconfiginfo.h > include/petscconvest.h > include/petscctable.h >-include/petsccuda.h >+include/petsccublas.h >+include/petsccxxcomplexfix.h > include/petscdef.mod > include/petscdm.h > include/petscdm.mod >@@ -121,9 +130,12 @@ include/petscdmpatchdef.mod > include/petscdmplex.h > include/petscdmplex.mod > include/petscdmplexdef.mod >+include/petscdmplextypes.h >+include/petscdmproduct.h > include/petscdmredundant.h > include/petscdmshell.h > include/petscdmsliced.h >+include/petscdmstag.h > include/petscdmswarm.h > include/petscdmtypes.h > include/petscdraw.h >@@ -138,7 +150,6 @@ include/petscfetypes.h > include/petscfix.h > include/petscfv.h > include/petscfvtypes.h >-include/petscgll.h > include/petscis.h > include/petscis.mod > include/petscisdef.mod >@@ -148,6 +159,7 @@ include/petscksp.h > include/petscksp.mod > include/petsckspdef.mod > include/petsckspdefdummy.mod >+include/petsclayouthdf5.h > include/petsclog.h > include/petscmachineinfo.h > include/petscmat.h >@@ -166,6 +178,9 @@ include/petscpcdef.mod > include/petscpcdefdummy.mod > include/petscpctypes.h > include/petscpf.h >+include/petscpkg_version.h >+include/petscsection.h >+include/petscsectiontypes.h > include/petscsf.h > include/petscsftypes.h > include/petscsnes.h >@@ -176,6 +191,7 @@ include/petscsys.h > include/petscsys.mod > include/petscsysdef.mod > include/petscsysdefdummy.mod >+include/petscsystypes.h > include/petsctao.h > include/petsctao.mod > include/petsctaodef.mod >@@ -203,17 +219,23 @@ lib/libpetsc.so.%%SHLIB%% > lib/petsc/bin/PetscBinaryIO.py > lib/petsc/bin/PetscBinaryIOTrajectory.py > lib/petsc/bin/PetscBinaryIO_tests.py >+lib/petsc/bin/configureTAS.py >+lib/petsc/bin/extract.py > lib/petsc/bin/petsc_conf.py > lib/petsc/bin/petsc_gen_xdmf.py >+lib/petsc/bin/petsc_tas_analysis.py >+lib/petsc/bin/petsc_tas_style.mplstyle >+lib/petsc/bin/petsc-performance-view > lib/petsc/bin/petscdiff > lib/petsc/bin/petsclogformat.py > lib/petsc/bin/petscmpiexec >+lib/petsc/bin/petscnagfor > lib/petsc/bin/petscnagupgrade.py > lib/petsc/bin/saws/SAWs.py > lib/petsc/bin/saws/getSAWs.bash > lib/petsc/bin/saws/getStack.bash > lib/petsc/bin/taucc.py >-lib/petsc/conf/PETScBuildInternal.cmake >+lib/petsc/conf/configure-hash > lib/petsc/conf/modules/petsc/%%SHLIB%% > lib/petsc/conf/petscrules > lib/petsc/conf/petscvariables >@@ -223,11 +245,14 @@ lib/petsc/conf/test > lib/petsc/conf/test.common > lib/petsc/conf/variables > libdata/pkgconfig/PETSc.pc >+%%DATADIR%%/Makefile.user > %%DATADIR%%/datafiles/matrices/amesos2_test_mat0.mtx > %%DATADIR%%/datafiles/matrices/hpd-complex-int32-float32 > %%DATADIR%%/datafiles/matrices/hpd-complex-int32-float64 > %%DATADIR%%/datafiles/matrices/hpd-complex-int64-float32 > %%DATADIR%%/datafiles/matrices/hpd-complex-int64-float64 >+%%DATADIR%%/datafiles/matrices/LFAT5.mtx >+%%DATADIR%%/datafiles/matrices/m_05_05_crk.mtx > %%DATADIR%%/datafiles/matrices/nh-complex-int32-float32 > %%DATADIR%%/datafiles/matrices/nh-complex-int32-float64 > %%DATADIR%%/datafiles/matrices/nh-complex-int64-float32 >@@ -243,6 +268,8 @@ libdata/pkgconfig/PETSc.pc > %%DATADIR%%/datafiles/matrices/spd-real-int64-float64 > %%DATADIR%%/datafiles/matrices/tiny_system > %%DATADIR%%/datafiles/matrices/tiny_system_with_x0 >+%%DATADIR%%/datafiles/matrices/tiny_system_with_x0_complex.mat >+%%DATADIR%%/datafiles/matrices/tiny_system_with_x0.mat > %%DATADIR%%/datafiles/matrices/tiny_system_x0 > %%DATADIR%%/datafiles/meshes/2Dgrd.exo > %%DATADIR%%/datafiles/meshes/FourBrickHex-large.exo >@@ -253,20 +280,33 @@ libdata/pkgconfig/PETSc.pc > %%DATADIR%%/datafiles/meshes/Rect-tri3.exo > %%DATADIR%%/datafiles/meshes/TwoQuads.exo > %%DATADIR%%/datafiles/meshes/annulus-20.exo >+%%DATADIR%%/datafiles/meshes/barycentricallyrefinedcube.h5 > %%DATADIR%%/datafiles/meshes/blockcylinder-50.exo > %%DATADIR%%/datafiles/meshes/blockcylinder-50.h5 > %%DATADIR%%/datafiles/meshes/blockcylinder-50.xmf > %%DATADIR%%/datafiles/meshes/cow.msh > %%DATADIR%%/datafiles/meshes/cube_5tets.cas > %%DATADIR%%/datafiles/meshes/cube_5tets_ascii.cas >-%%DATADIR%%/datafiles/meshes/cube_periodic.msh >-%%DATADIR%%/datafiles/meshes/cube_periodic_bin.msh > %%DATADIR%%/datafiles/meshes/cylinder.med > %%DATADIR%%/datafiles/meshes/doublet-tet.msh >+%%DATADIR%%/datafiles/meshes/gmsh-3d-ascii-32.msh >+%%DATADIR%%/datafiles/meshes/gmsh-3d-ascii-64.msh >+%%DATADIR%%/datafiles/meshes/gmsh-3d-ascii.msh2 >+%%DATADIR%%/datafiles/meshes/gmsh-3d-ascii.msh4 >+%%DATADIR%%/datafiles/meshes/gmsh-3d-binary-32.msh >+%%DATADIR%%/datafiles/meshes/gmsh-3d-binary-64.msh >+%%DATADIR%%/datafiles/meshes/gmsh-3d-binary.msh2 >+%%DATADIR%%/datafiles/meshes/gmsh-3d-binary.msh4 >+%%DATADIR%%/datafiles/meshes/gmsh-3d.geo > %%DATADIR%%/datafiles/meshes/grid_c.cgns > %%DATADIR%%/datafiles/meshes/horse.ply.bz2 >+%%DATADIR%%/datafiles/meshes/hybrid_3d_cube.msh >+%%DATADIR%%/datafiles/meshes/hybrid_hexwedge.exo >+%%DATADIR%%/datafiles/meshes/hybrid_hexwedge.msh > %%DATADIR%%/datafiles/meshes/hybrid_tetwedge.msh > %%DATADIR%%/datafiles/meshes/hybrid_triquad.msh >+%%DATADIR%%/datafiles/meshes/mesh-3d-box-innersphere_bin.msh >+%%DATADIR%%/datafiles/meshes/mesh-3d-box-innersphere.msh > %%DATADIR%%/datafiles/meshes/sevenside-quad-15.exo > %%DATADIR%%/datafiles/meshes/sevenside-quad.exo > %%DATADIR%%/datafiles/meshes/sevenside.exo
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bug 240996
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