Index: Makefile
===================================================================
--- Makefile	(revision 522468)
+++ Makefile	(working copy)
@@ -2,30 +2,42 @@
 # $FreeBSD$
 
 PORTNAME=	mrbayes
-PORTVERSION=	3.1.2
-PORTREVISION=	3
+PORTVERSION=	3.2.7a
 CATEGORIES=	biology
-MASTER_SITES=	SF
+MASTER_SITES=	https://github.com/NBISweden/MrBayes/releases/download/v${PORTVERSION}/
 
-MAINTAINER=	mzaki@m.u-tokyo.ac.jp
+MAINTAINER=	mzaki@e-mail.ne.jp
 COMMENT=	Bayesian inference of phylogeny
 
-BROKEN=		unfetchable
+LICENSE=	GPLv3
+LICENSE_FILE=	${WRKSRC}/COPYING
 
-OPTIONS_DEFINE=	EXAMPLES
+USES=		readline:port
 
-USES=		gmake readline:port
+GNU_CONFIGURE=	yes
 
-PLIST_FILES=	bin/mb
+OPTIONS_DEFINE=		DOCS EXAMPLES
 
-PORTEXAMPLES=	adh.nex anolis.nex avian_ovomucoids.nex bglobin.nex \
-		cynmix.nex kim.nex primates.nex replicase.nex
+OPTIONS_DEFINE_i386=	SSE AVX FMA
+OPTIONS_DEFINE_amd64=	SSE AVX FMA
+OPTIONS_DEFAULT_amd64=	SSE
+SSE_CONFIGURE_OFF=	--disable-sse
+AVX_DESC=		Use AVX optimized routines
+AVX_IMPLIES=		SSE
+AVX_CONFIGURE_OFF=	--disable-avx
+FMA_DESC=		Use FMA optimized routines
+FMA_IMPLIES=		SSE AVX
+FMA_CONFIGURE_OFF=	--disable-fma
 
-do-install:
-	${INSTALL_PROGRAM} ${WRKSRC}/mb ${STAGEDIR}${PREFIX}/bin/
-	@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
-.for file in ${PORTEXAMPLES}
-	${INSTALL_DATA} ${WRKSRC}/${file} ${STAGEDIR}${EXAMPLESDIR}
-.endfor
+OPTIONS_RADIO=		MPI
+OPTIONS_RADIO_MPI=	MPICH OPENMPI
+MPICH_LIB_DEPENDS=	libmpich.so:net/mpich
+MPICH_CONFIGURE_ON=	--with-mpi
+MPICH_CONFIGURE_ENV=	CC="${LOCALBASE}/bin/mpicc"
+OPENMPI_LIB_DEPENDS=	libmpi.so:net/openmpi
+OPENMPI_CONFIGURE_ON=	--with-mpi
+OPENMPI_CONFIGURE_ENV=	CC="${LOCALBASE}/mpi/openmpi/bin/mpicc"
 
+OPTIONS_EXCLUDE_i386=	OPENMPI
+
 .include <bsd.port.mk>
Index: distinfo
===================================================================
--- distinfo	(revision 522468)
+++ distinfo	(working copy)
@@ -1,2 +1,3 @@
-SHA256 (mrbayes-3.1.2.tar.gz) = c60253de1980c9f0a0eb684fffe7ba428fda7c39a3edcb6acf384b5e1443f2f4
-SIZE (mrbayes-3.1.2.tar.gz) = 545968
+TIMESTAMP = 1578551242
+SHA256 (mrbayes-3.2.7a.tar.gz) = 1a4670be84e6b968d59382328294db4c8ceb73e0c19c702265deec6f2177815c
+SIZE (mrbayes-3.2.7a.tar.gz) = 9787401
Index: files/patch-Makefile
===================================================================
--- files/patch-Makefile	(revision 522468)
+++ files/patch-Makefile	(nonexistent)
@@ -1,20 +0,0 @@
---- Makefile.orig	2005-12-22 11:13:06.000000000 -0500
-+++ Makefile	2014-08-15 12:36:02.000000000 -0400
-@@ -19,7 +19,7 @@
- 
- # set compiler for the non-MPI version (mpicc will be used for the MPI
- # version regardless of this setting)
--CC = gcc
-+CC ?= gcc
- 
- # set to yes if you want to use the readline library (make sure you have it
- # installed on your machine)
-@@ -67,7 +67,7 @@
- 
- LIBS     +=   -lm
- 
--LDFLAGS  =   $(CFLAGS)
-+LDFLAGS  +=   $(CFLAGS)
- LDLIBS   =   $(LIBS)
- 
- OBJECTS   =   bayes.o command.o mbmath.o mcmc.o model.o plot.o sump.o sumt.o

Property changes on: files/patch-Makefile
___________________________________________________________________
Deleted: fbsd:nokeywords
## -1 +0,0 ##
-yes
\ No newline at end of property
Deleted: svn:eol-style
## -1 +0,0 ##
-native
\ No newline at end of property
Deleted: svn:mime-type
## -1 +0,0 ##
-text/plain
\ No newline at end of property
Index: pkg-descr
===================================================================
--- pkg-descr	(revision 522468)
+++ pkg-descr	(working copy)
@@ -8,4 +8,4 @@
 technique called Markov chain Monte Carlo (or MCMC) to approximate the
 posterior probabilities of trees.
 
-WWW: http://mrbayes.csit.fsu.edu/
+WWW: http://nbisweden.github.io/MrBayes/
Index: pkg-plist
===================================================================
--- pkg-plist	(nonexistent)
+++ pkg-plist	(working copy)
@@ -0,0 +1,15 @@
+bin/mb
+%%PORTDOCS%%%%DOCSDIR%%/COPYING
+%%PORTDOCS%%%%DOCSDIR%%/MBDating.pdf
+%%PORTDOCS%%%%DOCSDIR%%/Manual_MrBayes_v3.2.pdf
+%%PORTDOCS%%%%DOCSDIR%%/NEWS
+%%PORTDOCS%%%%DOCSDIR%%/README
+%%PORTDOCS%%%%DOCSDIR%%/hym.nex
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/avian_ovomucoids.nex
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/codon.nex
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cynmix.nex
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/finch.nex
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hymfossil.nex
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/primates.nex
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/replicase.nex
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sceloporus.nex

Property changes on: pkg-plist
___________________________________________________________________
Added: fbsd:nokeywords
## -0,0 +1 ##
+yes
\ No newline at end of property
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Added: svn:mime-type
## -0,0 +1 ##
+text/plain
\ No newline at end of property