Attachment 214249 Details for Bug 246294 – patch

[patch] patch

mlpack.patch (text/plain), 13.52 KB, created by Yuri Victorovich on 2020-05-07 23:32:42 UTC

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Creator: Yuri Victorovich

Created: 2020-05-07 23:32:42 UTC

Size: 13.52 KB

patch

obsolete

>Index: math/mlpack/Makefile
>===================================================================
>--- math/mlpack/Makefile	(revision 534300)
>+++ math/mlpack/Makefile	(working copy)
>@@ -1,8 +1,7 @@
> # $FreeBSD$
> 
> PORTNAME=	mlpack
>-DISTVERSION=	3.2.2
>-PORTREVISION=	2
>+DISTVERSION=	3.3.1
> CATEGORIES=	math # machine-learning
> MASTER_SITES=	https://mlpack.org/files/
> 
>@@ -22,8 +21,14 @@
> USE_LDCONFIG=	yes
> 
> CMAKE_ARGS=	-DSTB_IMAGE_INCLUDE_DIR=${LOCALBASE}/include/stb
>-CMAKE_OFF=	BUILD_PYTHON_BINDINGS BUILD_TESTS BUILD_CLI_EXECUTABLES
>+CMAKE_OFF=	BUILD_PYTHON_BINDINGS BUILD_TESTS
> 
>+OPTIONS_DEFINE=		EXECUTABLES
>+OPTIONS_SUB=		yes
>+
>+EXECUTABLES_DESC=	Build command-line executables
>+EXECUTABLES_CMAKE_BOOL=	BUILD_CLI_EXECUTABLES
>+
> do-test: # 'clean' target below is a workaround for: https://github.com/mlpack/mlpack/issues/2300
> 	@cd ${BUILD_WRKSRC} && \
> 		${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} clean && \
>Index: math/mlpack/distinfo
>===================================================================
>--- math/mlpack/distinfo	(revision 534300)
>+++ math/mlpack/distinfo	(working copy)
>@@ -1,3 +1,3 @@
>-TIMESTAMP = 1584124401
>-SHA256 (mlpack-3.2.2.tar.gz) = 7aef8c27645c9358262fec9ebba380720a086789d6519d5d1034346412a52ad6
>-SIZE (mlpack-3.2.2.tar.gz) = 5378165
>+TIMESTAMP = 1588891112
>+SHA256 (mlpack-3.3.1.tar.gz) = 310f95faa93b975c1489344ae4a499eddcd825ef9db76909eb680e1695cd1e36
>+SIZE (mlpack-3.3.1.tar.gz) = 5464070
>Index: math/mlpack/pkg-plist
>===================================================================
>--- math/mlpack/pkg-plist	(revision 534300)
>+++ math/mlpack/pkg-plist	(working copy)
>@@ -1,3 +1,50 @@
>+%%EXECUTABLES%%bin/mlpack_adaboost
>+%%EXECUTABLES%%bin/mlpack_approx_kfn
>+%%EXECUTABLES%%bin/mlpack_cf
>+%%EXECUTABLES%%bin/mlpack_dbscan
>+%%EXECUTABLES%%bin/mlpack_decision_stump
>+%%EXECUTABLES%%bin/mlpack_decision_tree
>+%%EXECUTABLES%%bin/mlpack_det
>+%%EXECUTABLES%%bin/mlpack_emst
>+%%EXECUTABLES%%bin/mlpack_fastmks
>+%%EXECUTABLES%%bin/mlpack_gmm_generate
>+%%EXECUTABLES%%bin/mlpack_gmm_probability
>+%%EXECUTABLES%%bin/mlpack_gmm_train
>+%%EXECUTABLES%%bin/mlpack_hmm_generate
>+%%EXECUTABLES%%bin/mlpack_hmm_loglik
>+%%EXECUTABLES%%bin/mlpack_hmm_train
>+%%EXECUTABLES%%bin/mlpack_hmm_viterbi
>+%%EXECUTABLES%%bin/mlpack_hoeffding_tree
>+%%EXECUTABLES%%bin/mlpack_image_converter
>+%%EXECUTABLES%%bin/mlpack_kde
>+%%EXECUTABLES%%bin/mlpack_kernel_pca
>+%%EXECUTABLES%%bin/mlpack_kfn
>+%%EXECUTABLES%%bin/mlpack_kmeans
>+%%EXECUTABLES%%bin/mlpack_knn
>+%%EXECUTABLES%%bin/mlpack_krann
>+%%EXECUTABLES%%bin/mlpack_lars
>+%%EXECUTABLES%%bin/mlpack_linear_regression
>+%%EXECUTABLES%%bin/mlpack_linear_svm
>+%%EXECUTABLES%%bin/mlpack_lmnn
>+%%EXECUTABLES%%bin/mlpack_local_coordinate_coding
>+%%EXECUTABLES%%bin/mlpack_logistic_regression
>+%%EXECUTABLES%%bin/mlpack_lsh
>+%%EXECUTABLES%%bin/mlpack_mean_shift
>+%%EXECUTABLES%%bin/mlpack_nbc
>+%%EXECUTABLES%%bin/mlpack_nca
>+%%EXECUTABLES%%bin/mlpack_nmf
>+%%EXECUTABLES%%bin/mlpack_pca
>+%%EXECUTABLES%%bin/mlpack_perceptron
>+%%EXECUTABLES%%bin/mlpack_preprocess_binarize
>+%%EXECUTABLES%%bin/mlpack_preprocess_describe
>+%%EXECUTABLES%%bin/mlpack_preprocess_imputer
>+%%EXECUTABLES%%bin/mlpack_preprocess_scale
>+%%EXECUTABLES%%bin/mlpack_preprocess_split
>+%%EXECUTABLES%%bin/mlpack_radical
>+%%EXECUTABLES%%bin/mlpack_random_forest
>+%%EXECUTABLES%%bin/mlpack_range_search
>+%%EXECUTABLES%%bin/mlpack_softmax_regression
>+%%EXECUTABLES%%bin/mlpack_sparse_coding
> include/mlpack/bindings/cli/add_to_po.hpp
> include/mlpack/bindings/cli/cli_option.hpp
> include/mlpack/bindings/cli/default_param.hpp
>@@ -15,6 +62,7 @@
> include/mlpack/bindings/cli/get_printable_type.hpp
> include/mlpack/bindings/cli/get_printable_type_impl.hpp
> include/mlpack/bindings/cli/get_raw_param.hpp
>+include/mlpack/bindings/cli/in_place_copy.hpp
> include/mlpack/bindings/cli/map_parameter_name.hpp
> include/mlpack/bindings/cli/output_param.hpp
> include/mlpack/bindings/cli/output_param_impl.hpp
>@@ -28,6 +76,29 @@
> include/mlpack/bindings/cli/set_param.hpp
> include/mlpack/bindings/cli/string_type_param.hpp
> include/mlpack/bindings/cli/string_type_param_impl.hpp
>+include/mlpack/bindings/julia/default_param.hpp
>+include/mlpack/bindings/julia/default_param_impl.hpp
>+include/mlpack/bindings/julia/get_julia_type.hpp
>+include/mlpack/bindings/julia/get_param.hpp
>+include/mlpack/bindings/julia/get_printable_param.hpp
>+include/mlpack/bindings/julia/get_printable_type.hpp
>+include/mlpack/bindings/julia/get_printable_type_impl.hpp
>+include/mlpack/bindings/julia/julia_option.hpp
>+include/mlpack/bindings/julia/julia_util.h
>+include/mlpack/bindings/julia/print_doc.hpp
>+include/mlpack/bindings/julia/print_doc_functions.hpp
>+include/mlpack/bindings/julia/print_doc_functions_impl.hpp
>+include/mlpack/bindings/julia/print_input_param.hpp
>+include/mlpack/bindings/julia/print_input_processing.hpp
>+include/mlpack/bindings/julia/print_input_processing_impl.hpp
>+include/mlpack/bindings/julia/print_jl.hpp
>+include/mlpack/bindings/julia/print_model_type_import.hpp
>+include/mlpack/bindings/julia/print_output_processing.hpp
>+include/mlpack/bindings/julia/print_output_processing_impl.hpp
>+include/mlpack/bindings/julia/print_param_defn.hpp
>+include/mlpack/bindings/julia/print_type_doc.hpp
>+include/mlpack/bindings/julia/print_type_doc_impl.hpp
>+include/mlpack/bindings/julia/strip_type.hpp
> include/mlpack/bindings/markdown/binding_info.hpp
> include/mlpack/bindings/markdown/default_param.hpp
> include/mlpack/bindings/markdown/get_binding_name.hpp
>@@ -88,8 +159,8 @@
> include/mlpack/core/arma_extend/SpMat_extra_meat.hpp
> include/mlpack/core/arma_extend/arma_extend.hpp
> include/mlpack/core/boost_backport/bernoulli.hpp
>-include/mlpack/core/boost_backport/boost_backport_math.hpp
> include/mlpack/core/boost_backport/boost_backport_serialization.hpp
>+include/mlpack/core/boost_backport/boost_backport_string_view.hpp
> include/mlpack/core/boost_backport/collections_load_imp.hpp
> include/mlpack/core/boost_backport/collections_save_imp.hpp
> include/mlpack/core/boost_backport/detail/bernoulli_details.hpp
>@@ -97,11 +168,10 @@
> include/mlpack/core/boost_backport/detail/unchecked_bernoulli.hpp
> include/mlpack/core/boost_backport/math_fwd.hpp
> include/mlpack/core/boost_backport/policy.hpp
>-include/mlpack/core/boost_backport/polygamma.hpp
>-include/mlpack/core/boost_backport/trigamma.hpp
>+include/mlpack/core/boost_backport/string_view.hpp
>+include/mlpack/core/boost_backport/string_view_fwd.hpp
> include/mlpack/core/boost_backport/unordered_collections_load_imp.hpp
> include/mlpack/core/boost_backport/unordered_collections_save_imp.hpp
>-include/mlpack/core/boost_backport/unordered_map.hpp
> include/mlpack/core/boost_backport/vector.hpp
> include/mlpack/core/cv/cv_base.hpp
> include/mlpack/core/cv/cv_base_impl.hpp
>@@ -118,6 +188,8 @@
> include/mlpack/core/cv/metrics/mse_impl.hpp
> include/mlpack/core/cv/metrics/precision.hpp
> include/mlpack/core/cv/metrics/precision_impl.hpp
>+include/mlpack/core/cv/metrics/r2_score.hpp
>+include/mlpack/core/cv/metrics/r2_score_impl.hpp
> include/mlpack/core/cv/metrics/recall.hpp
> include/mlpack/core/cv/metrics/recall_impl.hpp
> include/mlpack/core/cv/simple_cv.hpp
>@@ -163,6 +235,15 @@
> include/mlpack/core/data/scaler_methods/zca_whitening.hpp
> include/mlpack/core/data/serialization_template_version.hpp
> include/mlpack/core/data/split_data.hpp
>+include/mlpack/core/data/string_encoding.hpp
>+include/mlpack/core/data/string_encoding_dictionary.hpp
>+include/mlpack/core/data/string_encoding_impl.hpp
>+include/mlpack/core/data/string_encoding_policies/bag_of_words_encoding_policy.hpp
>+include/mlpack/core/data/string_encoding_policies/dictionary_encoding_policy.hpp
>+include/mlpack/core/data/string_encoding_policies/policy_traits.hpp
>+include/mlpack/core/data/string_encoding_policies/tf_idf_encoding_policy.hpp
>+include/mlpack/core/data/tokenizers/char_extract.hpp
>+include/mlpack/core/data/tokenizers/split_by_any_of.hpp
> include/mlpack/core/dists/diagonal_gaussian_distribution.hpp
> include/mlpack/core/dists/discrete_distribution.hpp
> include/mlpack/core/dists/gamma_distribution.hpp
>@@ -355,6 +436,7 @@
> include/mlpack/core/util/program_doc.hpp
> include/mlpack/core/util/sfinae_utility.hpp
> include/mlpack/core/util/timers.hpp
>+include/mlpack/core/util/to_lower.hpp
> include/mlpack/core/util/version.hpp
> include/mlpack/methods/adaboost/adaboost.hpp
> include/mlpack/methods/adaboost/adaboost_impl.hpp
>@@ -363,6 +445,7 @@
> include/mlpack/methods/amf/amf_impl.hpp
> include/mlpack/methods/amf/init_rules/average_init.hpp
> include/mlpack/methods/amf/init_rules/given_init.hpp
>+include/mlpack/methods/amf/init_rules/merge_init.hpp
> include/mlpack/methods/amf/init_rules/random_acol_init.hpp
> include/mlpack/methods/amf/init_rules/random_init.hpp
> include/mlpack/methods/amf/termination_policies/complete_incremental_termination.hpp
>@@ -377,9 +460,13 @@
> include/mlpack/methods/amf/update_rules/svd_batch_learning.hpp
> include/mlpack/methods/amf/update_rules/svd_complete_incremental_learning.hpp
> include/mlpack/methods/amf/update_rules/svd_incomplete_incremental_learning.hpp
>+include/mlpack/methods/ann/activation_functions/elish_function.hpp
>+include/mlpack/methods/ann/activation_functions/gelu_function.hpp
> include/mlpack/methods/ann/activation_functions/hard_sigmoid_function.hpp
> include/mlpack/methods/ann/activation_functions/identity_function.hpp
>+include/mlpack/methods/ann/activation_functions/lisht_function.hpp
> include/mlpack/methods/ann/activation_functions/logistic_function.hpp
>+include/mlpack/methods/ann/activation_functions/mish_function.hpp
> include/mlpack/methods/ann/activation_functions/rectifier_function.hpp
> include/mlpack/methods/ann/activation_functions/softplus_function.hpp
> include/mlpack/methods/ann/activation_functions/softsign_function.hpp
>@@ -437,6 +524,8 @@
> include/mlpack/methods/ann/layer/bilinear_interpolation_impl.hpp
> include/mlpack/methods/ann/layer/c_relu.hpp
> include/mlpack/methods/ann/layer/c_relu_impl.hpp
>+include/mlpack/methods/ann/layer/celu.hpp
>+include/mlpack/methods/ann/layer/celu_impl.hpp
> include/mlpack/methods/ann/layer/concat.hpp
> include/mlpack/methods/ann/layer/concat_impl.hpp
> include/mlpack/methods/ann/layer/concat_performance.hpp
>@@ -463,6 +552,8 @@
> include/mlpack/methods/ann/layer/gru_impl.hpp
> include/mlpack/methods/ann/layer/hard_tanh.hpp
> include/mlpack/methods/ann/layer/hard_tanh_impl.hpp
>+include/mlpack/methods/ann/layer/hardshrink.hpp
>+include/mlpack/methods/ann/layer/hardshrink_impl.hpp
> include/mlpack/methods/ann/layer/highway.hpp
> include/mlpack/methods/ann/layer/highway_impl.hpp
> include/mlpack/methods/ann/layer/join.hpp
>@@ -510,6 +601,8 @@
> include/mlpack/methods/ann/layer/select_impl.hpp
> include/mlpack/methods/ann/layer/sequential.hpp
> include/mlpack/methods/ann/layer/sequential_impl.hpp
>+include/mlpack/methods/ann/layer/softshrink.hpp
>+include/mlpack/methods/ann/layer/softshrink_impl.hpp
> include/mlpack/methods/ann/layer/subview.hpp
> include/mlpack/methods/ann/layer/transposed_convolution.hpp
> include/mlpack/methods/ann/layer/transposed_convolution_impl.hpp
>@@ -520,6 +613,8 @@
> include/mlpack/methods/ann/layer/weight_norm.hpp
> include/mlpack/methods/ann/layer/weight_norm_impl.hpp
> include/mlpack/methods/ann/layer_names.hpp
>+include/mlpack/methods/ann/loss_functions/cosine_embedding_loss.hpp
>+include/mlpack/methods/ann/loss_functions/cosine_embedding_loss_impl.hpp
> include/mlpack/methods/ann/loss_functions/cross_entropy_error.hpp
> include/mlpack/methods/ann/loss_functions/cross_entropy_error_impl.hpp
> include/mlpack/methods/ann/loss_functions/dice_loss.hpp
>@@ -526,10 +621,24 @@
> include/mlpack/methods/ann/loss_functions/dice_loss_impl.hpp
> include/mlpack/methods/ann/loss_functions/earth_mover_distance.hpp
> include/mlpack/methods/ann/loss_functions/earth_mover_distance_impl.hpp
>+include/mlpack/methods/ann/loss_functions/hinge_embedding_loss.hpp
>+include/mlpack/methods/ann/loss_functions/hinge_embedding_loss_impl.hpp
>+include/mlpack/methods/ann/loss_functions/huber_loss.hpp
>+include/mlpack/methods/ann/loss_functions/huber_loss_impl.hpp
> include/mlpack/methods/ann/loss_functions/kl_divergence.hpp
> include/mlpack/methods/ann/loss_functions/kl_divergence_impl.hpp
>+include/mlpack/methods/ann/loss_functions/l1_loss.hpp
>+include/mlpack/methods/ann/loss_functions/l1_loss_impl.hpp
>+include/mlpack/methods/ann/loss_functions/log_cosh_loss.hpp
>+include/mlpack/methods/ann/loss_functions/log_cosh_loss_impl.hpp
>+include/mlpack/methods/ann/loss_functions/margin_ranking_loss.hpp
>+include/mlpack/methods/ann/loss_functions/margin_ranking_loss_impl.hpp
>+include/mlpack/methods/ann/loss_functions/mean_bias_error.hpp
>+include/mlpack/methods/ann/loss_functions/mean_bias_error_impl.hpp
> include/mlpack/methods/ann/loss_functions/mean_squared_error.hpp
> include/mlpack/methods/ann/loss_functions/mean_squared_error_impl.hpp
>+include/mlpack/methods/ann/loss_functions/mean_squared_logarithmic_error.hpp
>+include/mlpack/methods/ann/loss_functions/mean_squared_logarithmic_error_impl.hpp
> include/mlpack/methods/ann/loss_functions/negative_log_likelihood.hpp
> include/mlpack/methods/ann/loss_functions/negative_log_likelihood_impl.hpp
> include/mlpack/methods/ann/loss_functions/reconstruction_loss.hpp
>@@ -845,6 +954,7 @@
> include/mlpack/methods/reinforcement_learning/policy/greedy_policy.hpp
> include/mlpack/methods/reinforcement_learning/q_learning.hpp
> include/mlpack/methods/reinforcement_learning/q_learning_impl.hpp
>+include/mlpack/methods/reinforcement_learning/q_networks/simple_dqn.hpp
> include/mlpack/methods/reinforcement_learning/replay/prioritized_replay.hpp
> include/mlpack/methods/reinforcement_learning/replay/random_replay.hpp
> include/mlpack/methods/reinforcement_learning/replay/sumtree.hpp
>@@ -881,5 +991,5 @@
> include/mlpack/tests/test_tools.hpp
> lib/libmlpack.so
> lib/libmlpack.so.3
>-lib/libmlpack.so.3.2
>+lib/libmlpack.so.3.3
> libdata/pkgconfig/mlpack.pc

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Attachments on bug 246294: 214248 | 214249