Attachment 214830 Details for Bug 242546 – orthanc-1.6.1

orthanc-1.6.1

orthanc.shar (text/plain), 11.75 KB, created by Frank Scholl on 2020-05-25 06:08:40 UTC

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Creator: Frank Scholl

Created: 2020-05-25 06:08:40 UTC

Size: 11.75 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	orthanc
>#	orthanc/pkg-descr
>#	orthanc/pkg-plist
>#	orthanc/files
>#	orthanc/files/orthanc.in
>#	orthanc/files/patch-Resources_Configuration.json
>#	orthanc/files/patch-CMakeLists.txt
>#	orthanc/Makefile
>#	orthanc/distinfo
>#
>echo c - orthanc
>mkdir -p orthanc > /dev/null 2>&1
>echo x - orthanc/pkg-descr
>sed 's/^X//' >orthanc/pkg-descr << '032a5e628b4bf82a0ccfdb5e40185fd1'
>XOrthanc aims at providing a simple, yet powerful standalone DICOM server. It
>Xis designed to improve the DICOM flows in hospitals and to support research
>Xabout the automated analysis of medical images. Orthanc lets its users focus
>Xon the content of the DICOM files, hiding the complexity of the DICOM format
>Xand of the DICOM protocol.
>X
>XOrthanc can turn any computer running Windows, Linux, FreeBSD or OS X into a
>XDICOM store (in other words, a mini-PACS system). Its architecture is
>Xlightweight and standalone, meaning that no complex database administration
>Xis required, nor the installation of third-party dependencies.
>X
>XWhat makes Orthanc unique is the fact that it provides a RESTful API. Thanks
>Xto this major feature, it is possible to drive Orthanc from any computer
>Xlanguage. The DICOM tags of the stored medical images can be downloaded in
>Xthe JSON file format. Furthermore, standard PNG images can be generated
>Xon-the-fly from the DICOM instances by Orthanc.
>X
>XOrthanc also features a plugin mechanism to add new modules that extends the
>Xcore capabilities of its REST API. A Web viewer, a PostgreSQL database
>Xback-end, a MySQL database back-end, and a reference implementation of
>XDICOMweb are currently freely available as plugins.
>X
>XWWW: https://www.orthanc-server.com/
>032a5e628b4bf82a0ccfdb5e40185fd1
>echo x - orthanc/pkg-plist
>sed 's/^X//' >orthanc/pkg-plist << 'f55fa2a6da50a58c71d054925b57ab3b'
>X@owner orthanc
>X@group orthanc
>X@mode 700
>X@dir %%DATADIR%%/plugins
>X@dir /var/db/orthanc/db/db-v5
>X@dir /var/db/orthanc/db
>X@dir /var/db/orthanc
>X@mode 600
>X@sample %%ETCDIR%%/orthanc.json.sample
>X@mode
>Xinclude/orthanc/OrthancCDatabasePlugin.h
>Xinclude/orthanc/OrthancCPlugin.h
>Xbin/OrthancRecoverCompressedFile
>Xsbin/Orthanc
>Xetc/rc.d/orthanc
>X%%DATADIR%%/plugins/%%LUA_LIBDIR%%ConnectivityChecks.so
>X%%DATADIR%%/plugins/%%LUA_LIBDIR%%ConnectivityChecks.so.%%PORTVERSION%%
>X%%DATADIR%%/plugins/%%LUA_LIBDIR%%ModalityWorklists.so
>X%%DATADIR%%/plugins/%%LUA_LIBDIR%%ModalityWorklists.so.%%PORTVERSION%%
>X%%DATADIR%%/plugins/%%LUA_LIBDIR%%ServeFolders.so
>X%%DATADIR%%/plugins/%%LUA_LIBDIR%%ServeFolders.so.%%PORTVERSION%%
>f55fa2a6da50a58c71d054925b57ab3b
>echo c - orthanc/files
>mkdir -p orthanc/files > /dev/null 2>&1
>echo x - orthanc/files/orthanc.in
>sed 's/^X//' >orthanc/files/orthanc.in << '542f8b85dde137c99eef239bb81f6c33'
>X#!/bin/sh
>X
>X# $FreeBSD$
>X#
>X# PROVIDE: orthanc
>X# REQUIRE: LOGIN
>X# KEYWORD: shutdown
>X#
>X# Add these lines to /etc/rc.conf.local or /etc/rc.conf
>X# to enable this service:
>X#
>X# orthanc_enable (bool):	Set to NO by default.
>X#				Set it to YES to enable Orthanc.
>X# orthanc_flags (str):		Set to %%ETCDIR%%/orthanc.json
>X#				by default.
>X
>X. /etc/rc.subr
>X
>Xname=orthanc
>Xrcvar=orthanc_enable
>Xdesc="RESTful DICOM server for healthcare and medical research"
>X
>Xload_rc_config $name
>X
>X: ${orthanc_enable:=NO}
>X: ${orthanc_flags="%%ETCDIR%%/orthanc.json"}
>X
>Xstart_precmd=orthanc_prestart
>Xpidfile=/var/run/orthanc.pid
>Xprocname=%%PREFIX%%/sbin/Orthanc
>Xcommand=/usr/sbin/daemon
>Xcommand_args=" -f -p ${pidfile} -u orthanc ${procname} ${orthanc_flags}"
>X
>Xorthanc_prestart()
>X{
>X	# Have to empty rc_flags so they don't get passed to daemon(8)
>X	rc_flags=""
>X}
>X
>Xrun_rc_command "$1"
>542f8b85dde137c99eef239bb81f6c33
>echo x - orthanc/files/patch-Resources_Configuration.json
>sed 's/^X//' >orthanc/files/patch-Resources_Configuration.json << '386dabba8d1f60f59f2dacbedd21e854'
>X--- Resources/Configuration.json.orig	2020-03-18 12:12:46 UTC
>X+++ Resources/Configuration.json
>X@@ -10,12 +10,12 @@
>X   // Path to the directory that holds the heavyweight files (i.e. the
>X   // raw DICOM instances). Backslashes must be either escaped by
>X   // doubling them, or replaced by forward slashes "/".
>X-  "StorageDirectory" : "OrthancStorage",
>X+  "StorageDirectory" : "/var/db/orthanc/db-v5",
>X 
>X   // Path to the directory that holds the SQLite index (if unset, the
>X   // value of StorageDirectory is used). This index could be stored on
>X   // a RAM-drive or a SSD device for performance reasons.
>X-  "IndexDirectory" : "OrthancStorage",
>X+  "IndexDirectory" : "/var/db/orthanc/db-v5",
>X 
>X   // Path to the directory where Orthanc stores its large temporary
>X   // files. The content of this folder can be safely deleted if
>X@@ -53,6 +53,7 @@
>X   // find shared libraries. Backslashes must be either escaped by
>X   // doubling them, or replaced by forward slashes "/".
>X   "Plugins" : [
>X+    "%%PREFIX%%/share/orthanc/plugins/"
>X   ],
>X 
>X   // Maximum number of processing jobs that are simultaneously running
>386dabba8d1f60f59f2dacbedd21e854
>echo x - orthanc/files/patch-CMakeLists.txt
>sed 's/^X//' >orthanc/files/patch-CMakeLists.txt << '569a43c1e3e0c4fbd905ea19cc72ac75'
>X--- CMakeLists.txt.orig	2020-04-01 15:55:47 UTC
>X+++ CMakeLists.txt
>X@@ -519,8 +519,8 @@ if (ENABLE_PLUGINS AND BUILD_CONNECTIVITY_CHECKS)
>X     list(GET CMAKE_FIND_LIBRARY_PREFIXES 0 Prefix)
>X     list(GET CMAKE_FIND_LIBRARY_SUFFIXES 0 Suffix)
>X     install(FILES
>X-      ${CMAKE_CURRENT_BINARY_DIR}/${Prefix}ConnectivityChecks${Suffix}
>X-      ${CMAKE_CURRENT_BINARY_DIR}/${Prefix}ConnectivityChecks${Suffix}.${ORTHANC_VERSION}
>X+      ${CMAKE_CURRENT_BINARY_DIR}/ConnectivityChecks-build/${Prefix}ConnectivityChecks${Suffix}
>X+      ${CMAKE_CURRENT_BINARY_DIR}/ConnectivityChecks-build/${Prefix}ConnectivityChecks${Suffix}.${ORTHANC_VERSION}
>X       DESTINATION "share/orthanc/plugins")
>X   endif()
>X endif()
>569a43c1e3e0c4fbd905ea19cc72ac75
>echo x - orthanc/Makefile
>sed 's/^X//' >orthanc/Makefile << 'bf1a1e0ee6e4db7a3b78b6b48849190d'
>X# Created by: maintainer.freebsd@xpoundit.com
>X# $FreeBSD$
>X
>XPORTNAME=	orthanc
>XPORTVERSION=	1.6.1
>XPORTREVISION=	0
>XCATEGORIES=	science
>XMASTER_SITES=	http://orthanc-server.com/downloads/get.php?path=/orthanc/:main \
>X		http://orthanc.osimis.io/ThirdPartyDownloads/:thirdparty
>XDISTFILES=	Orthanc-${PORTVERSION}.tar.gz:main \
>X		civetweb-1.12-fixed.tar.gz:thirdparty \
>X		e2fsprogs-1.44.5.tar.gz:thirdparty \
>X		dicom-web/bootstrap-4.3.1.zip:thirdparty \
>X		dicom-web/vuejs-2.6.10.tar.gz:thirdparty \
>X		dicom-web/axios-0.19.0.tar.gz:thirdparty \
>X		jquery-3.4.1.min.js:thirdparty
>XDIST_SUBDIR=	${PORTNAME}
>XEXTRACT_ONLY=	Orthanc-${PORTVERSION}.tar.gz
>X
>XMAINTAINER=	maintainer.freebsd@xpoundit.com
>XCOMMENT=	Orthanc is a DICOM server for healthcare and medical research
>X
>XLICENSE=	GPLv3
>XLICENSE_FILE=	${WRKSRC}/COPYING
>X
>XLIB_DEPENDS=	libboost_atomic.so:devel/boost-libs \
>X		libboost_chrono.so:devel/boost-libs \
>X		libboost_date_time.so:devel/boost-libs \
>X		libboost_filesystem.so:devel/boost-libs \
>X		libboost_locale.so:devel/boost-libs \
>X		libboost_regex.so:devel/boost-libs \
>X		libboost_system.so:devel/boost-libs \
>X		libboost_thread.so:devel/boost-libs \
>X		libcharls.so:graphics/dcmtk \
>X		libcmr.so:graphics/dcmtk \
>X		libcurl.so:ftp/curl \
>X		libdcmdata.so:graphics/dcmtk \
>X		libdcmdsig.so:graphics/dcmtk \
>X		libdcmfg.so:graphics/dcmtk \
>X		libdcmimage.so:graphics/dcmtk \
>X		libdcmimgle.so:graphics/dcmtk \
>X		libdcmiod.so:graphics/dcmtk \
>X		libdcmjpeg.so:graphics/dcmtk \
>X		libdcmjpls.so:graphics/dcmtk \
>X		libdcmnet.so:graphics/dcmtk \
>X		libdcmpmap.so:graphics/dcmtk \
>X		libdcmpstat.so:graphics/dcmtk \
>X		libdcmqrdb.so:graphics/dcmtk \
>X		libdcmrt.so:graphics/dcmtk \
>X		libdcmseg.so:graphics/dcmtk \
>X		libdcmsr.so:graphics/dcmtk \
>X		libdcmtls.so:graphics/dcmtk \
>X		libdcmtract.so:graphics/dcmtk \
>X		libdcmwlm.so:graphics/dcmtk \
>X		libgtest.so:devel/googletest \
>X		libgtest_main.so:devel/googletest \
>X		libi2d.so:graphics/dcmtk \
>X		libicudata.so:devel/icu \
>X		libicui18n.so:devel/icu \
>X		libicuuc.so:devel/icu \
>X		libijg12.so:graphics/dcmtk \
>X		libijg16.so:graphics/dcmtk \
>X		libijg8.so:graphics/dcmtk \
>X		libjbig.so:graphics/jbigkit \
>X		libjpeg.so:graphics/jpeg-turbo \
>X		libjsoncpp.so:devel/jsoncpp \
>X		libnghttp2.so:www/libnghttp2 \
>X		liboflog.so:graphics/dcmtk \
>X		libofstd.so:graphics/dcmtk \
>X		libpng16.so:graphics/png \
>X		libpugixml.so:textproc/pugixml \
>X		libsqlite3.so:databases/sqlite3 \
>X		libtiff.so:graphics/tiff \
>X		libuuid.so:misc/e2fsprogs-libuuid \
>X		libxml2.so:textproc/libxml2
>X
>XUSES=		cmake dos2unix jpeg lua:51 python:build ssl
>X
>XWRKSRC=		${WRKDIR}/Orthanc-${PORTVERSION}
>XCMAKE_ARGS=	-DDCMTK_LIBRARIES="dcmdsig;charls;dcmjpls" \
>X		-DDCMTK_DIR="${LOCALBASE}" \
>X		-DDCMTK_DICTIONARY_DIR="${LOCALBASE}/share/dcmtk" \
>X		-DUSE_SYSTEM_CIVETWEB=OFF \
>X		-DUSE_SYSTEM_UUID=OFF \
>X		-DUNIT_TESTS_WITH_HTTP_CONNEXIONS=OFF
>XCFLAGS+=	-I${LOCALBASE}/include \
>X		-DNDEBUG
>XCXXFLAGS+=	-DNDEBUG
>XDOS2UNIX_FILES=	CMakeLists.txt
>XUSE_LDCONFIG=	yes
>XUSE_RC_SUBR=	orthanc
>XUSERS=		orthanc
>XGROUPS=		orthanc
>XPLIST_SUB+=	PORTVERSION=${PORTVERSION}
>X
>Xpost-patch:
>X	${MKDIR} ${WRKSRC}/ThirdPartyDownloads
>X	${MKDIR} ${WRKSRC}/Plugins/Samples/ConnectivityChecks/ThirdPartyDownloads
>X	${CP} ${DISTDIR}/${DIST_SUBDIR}/civetweb-1.12-fixed.tar.gz ${WRKSRC}/ThirdPartyDownloads
>X	${CP} ${DISTDIR}/${DIST_SUBDIR}/e2fsprogs-1.44.5.tar.gz ${WRKSRC}/ThirdPartyDownloads
>X	${CP} ${DISTDIR}/${DIST_SUBDIR}/dicom-web/bootstrap-4.3.1.zip ${WRKSRC}/Plugins/Samples/ConnectivityChecks/ThirdPartyDownloads
>X	${CP} ${DISTDIR}/${DIST_SUBDIR}/dicom-web/vuejs-2.6.10.tar.gz ${WRKSRC}/Plugins/Samples/ConnectivityChecks/ThirdPartyDownloads
>X	${CP} ${DISTDIR}/${DIST_SUBDIR}/dicom-web/axios-0.19.0.tar.gz ${WRKSRC}/Plugins/Samples/ConnectivityChecks/ThirdPartyDownloads
>X	${CP} ${DISTDIR}/${DIST_SUBDIR}/jquery-3.4.1.min.js ${WRKSRC}/Plugins/Samples/ConnectivityChecks/ThirdPartyDownloads
>X	# Orthanc hardcodes /usr/local paths for libs and includes.
>X	@${REINPLACE_CMD} -e 's|/usr/local|${LOCALBASE}|g' ${WRKSRC}/Resources/CMake/*.cmake
>X
>Xpost-install:
>X	${MKDIR} ${STAGEDIR}/var/db/orthanc/db/db-v5
>X	${MKDIR} ${STAGEDIR}${DATADIR}/plugins
>X	${MKDIR} ${STAGEDIR}${ETCDIR}
>X	${REINPLACE_CMD} -e 's|%%PREFIX%%|${PREFIX}|g' ${WRKSRC}/Resources/Configuration.json
>X	${CP} ${WRKSRC}/Resources/Configuration.json ${STAGEDIR}${ETCDIR}/orthanc.json.sample
>X	${STRIP_CMD} ${STAGEDIR}${DATADIR}/plugins/libServeFolders.so.${PORTVERSION}
>X
>X.include <bsd.port.mk>
>bf1a1e0ee6e4db7a3b78b6b48849190d
>echo x - orthanc/distinfo
>sed 's/^X//' >orthanc/distinfo << '5841c696afd33aad8b05426dbef4f5ab'
>XTIMESTAMP = 1588925141
>XSHA256 (orthanc/Orthanc-1.6.1.tar.gz) = 86f6e1a79bc93f082fd5243dd4daaf5a2ea05fcdf515cf35f100829c5fe5c4df
>XSIZE (orthanc/Orthanc-1.6.1.tar.gz) = 1633929
>XSHA256 (orthanc/civetweb-1.12-fixed.tar.gz) = 0e81fc252166302a33abd68e98936fb24d9b008b5816fe50edd6b12256768e41
>XSIZE (orthanc/civetweb-1.12-fixed.tar.gz) = 3035855
>XSHA256 (orthanc/e2fsprogs-1.44.5.tar.gz) = 2e211fae27ef74d5af4a4e40b10b8df7f87c655933bd171aab4889bfc4e6d1cc
>XSIZE (orthanc/e2fsprogs-1.44.5.tar.gz) = 7619237
>XSHA256 (orthanc/dicom-web/bootstrap-4.3.1.zip) = c7fcae50c070250e4e1ae36a670e5ee8fe9d529eb3f1a03c527f8223ce3f61bc
>XSIZE (orthanc/dicom-web/bootstrap-4.3.1.zip) = 2705432
>XSHA256 (orthanc/dicom-web/vuejs-2.6.10.tar.gz) = e3d900cd9266b5bed9bb6d575fc9ab6787e79e7ad21c01ee1277bff5453121f2
>XSIZE (orthanc/dicom-web/vuejs-2.6.10.tar.gz) = 1576461
>XSHA256 (orthanc/dicom-web/axios-0.19.0.tar.gz) = 29577c6085b090b4e4a99392fcdd582fb6bbcb49b2aaf2cc7b7fa3874529b380
>XSIZE (orthanc/dicom-web/axios-0.19.0.tar.gz) = 125193
>XSHA256 (orthanc/jquery-3.4.1.min.js) = 0925e8ad7bd971391a8b1e98be8e87a6971919eb5b60c196485941c3c1df089a
>XSIZE (orthanc/jquery-3.4.1.min.js) = 88145
>5841c696afd33aad8b05426dbef4f5ab
>exit
>

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Attachments on bug 242546: 209831 | 214830 | 215799 | 215907 | 217005 | 217069 | 217125 | 217126 | 217732 | 225062 | 225335 | 225590 | 225634