FreeBSD Bugzilla – Attachment 216410 Details for
Bug 247939
biology/treekin: does not build with lapacke 3.9.0
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Log of treekin vs lapacke-3.9.0
treekin-0.5.1_2.log (text/plain), 45.26 KB, created by
Thierry Thomas
on 2020-07-12 20:55:13 UTC
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Description:
Log of treekin vs lapacke-3.9.0
Filename:
MIME Type:
Creator:
Thierry Thomas
Created:
2020-07-12 20:55:13 UTC
Size:
45.26 KB
patch
obsolete
>build started at Thu Jul 9 18:59:03 CEST 2020 >port directory: /usr/ports/biology/treekin >package name: treekin-0.5.1_2 >building for: FreeBSD 13amd64-default 13.0-CURRENT FreeBSD 13.0-CURRENT 1300098 amd64 >maintained by: yuri@FreeBSD.org >Makefile ident: $FreeBSD: head/biology/treekin/Makefile 524642 2020-01-30 14:17:44Z swills $ >Poudriere version: 3.3.4 >Host OSVERSION: 1300098 >Jail OSVERSION: 1300098 >Job Id: > >---Begin Environment--- >SHELL=/bin/csh >OSVERSION=1300098 >UNAME_v=FreeBSD 13.0-CURRENT 1300098 >UNAME_r=13.0-CURRENT >BLOCKSIZE=K >MAIL=/var/mail/root >STATUS=1 >HOME=/root >PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin >LOCALBASE=/usr/local >USER=root >TRYBROKEN=yes >LIBEXECPREFIX=/usr/local/libexec/poudriere >POUDRIERE_VERSION=3.3.4 >MASTERMNT=/usr/local/poudriere/data/.m/13amd64-default/ref >POUDRIERE_BUILD_TYPE=bulk >PACKAGE_BUILDING=yes >SAVED_TERM=xterm-256color >PWD=/usr/local/poudriere/data/.m/13amd64-default/ref/.p >NO_WARNING_PKG_INSTALL_EOL=yes >P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS >MASTERNAME=13amd64-default >SCRIPTPREFIX=/usr/local/share/poudriere >OLDPWD=/usr/local/poudriere/data/.m/13amd64-default/ref/.p >SCRIPTPATH=/usr/local/share/poudriere/testport.sh >POUDRIEREPATH=/usr/local/bin/poudriere >---End Environment--- > >---Begin Poudriere Port Flags/Env--- >PORT_FLAGS= >PKGENV=PACKAGES=/tmp/pkgs PKGREPOSITORY=/tmp/pkgs PKGLATESTREPOSITORY=/tmp/pkgs/Latest >FLAVOR= >DEPENDS_ARGS= >MAKE_ARGS= >---End Poudriere Port Flags/Env--- > >---Begin OPTIONS List--- >---End OPTIONS List--- > >--MAINTAINER-- >yuri@FreeBSD.org >--End MAINTAINER-- > >--CONFIGURE_ARGS-- >--prefix=/usr/local ${_LATE_CONFIGURE_ARGS} >--End CONFIGURE_ARGS-- > >--CONFIGURE_ENV-- >F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/treekin/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/treekin/work HOME=/wrkdirs/usr/ports/biology/treekin/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/treekin/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 >--End CONFIGURE_ENV-- > >--MAKE_ENV-- >F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/treekin/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/treekin/work HOME=/wrkdirs/usr/ports/biology/treekin/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/treekin/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" >--End MAKE_ENV-- > >--PLIST_SUB-- >OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/treekin" EXAMPLESDIR="share/examples/treekin" DATADIR="share/treekin" WWWDIR="www/treekin" ETCDIR="etc/treekin" >--End PLIST_SUB-- > >--SUB_LIST-- >PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/treekin DOCSDIR=/usr/local/share/doc/treekin EXAMPLESDIR=/usr/local/share/examples/treekin WWWDIR=/usr/local/www/treekin ETCDIR=/usr/local/etc/treekin >--End SUB_LIST-- > >---Begin make.conf--- >USE_PACKAGE_DEPENDS=yes >BATCH=yes >WRKDIRPREFIX=/wrkdirs >PORTSDIR=/usr/ports >PACKAGES=/packages >DISTDIR=/distfiles >FORCE_PACKAGE=yes >PACKAGE_BUILDING=yes >PACKAGE_BUILDING_FLAVORS=yes >WITH_CCACHE_BUILD=yes >CCACHE_DIR=/root/.ccache >#### /usr/ports/Mk/Scripts/ports_env.sh #### >_CCVERSION_921dbbb2=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-rc1-0-gf79cd71e145) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin >_ALTCCVERSION_921dbbb2=none >_CXXINTERNAL_acaad9ca=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-rc1-0-gf79cd71e145) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" >CC_OUTPUT_921dbbb2_58173849=yes >CC_OUTPUT_921dbbb2_9bdba57c=yes >CC_OUTPUT_921dbbb2_6a4fe7f5=yes >CC_OUTPUT_921dbbb2_6bcac02b=yes >CC_OUTPUT_921dbbb2_67d20829=yes >CC_OUTPUT_921dbbb2_bfa62e83=yes >CC_OUTPUT_921dbbb2_f0b4d593=yes >CC_OUTPUT_921dbbb2_308abb44=yes >CC_OUTPUT_921dbbb2_f00456e5=yes >CC_OUTPUT_921dbbb2_65ad290d=yes >CC_OUTPUT_921dbbb2_f2776b26=yes >CC_OUTPUT_921dbbb2_b2657cc3=yes >CC_OUTPUT_921dbbb2_380987f7=yes >CC_OUTPUT_921dbbb2_160933ec=yes >CC_OUTPUT_921dbbb2_fb62803b=yes >_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-rc1-0-gf79cd71e145) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin >_OBJC_ALTCCVERSION_921dbbb2=none >ARCH=amd64 >OPSYS=FreeBSD >_OSRELEASE=13.0-CURRENT >OSREL=13.0 >OSVERSION=1300098 >PYTHONBASE=/usr/local >HAVE_COMPAT_IA32_KERN=YES >_SMP_CPUS=8 >CONFIGURE_MAX_CMD_LEN=524288 >HAVE_PORTS_ENV=1 >#### Misc Poudriere #### >GID=0 >UID=0 >---End make.conf--- >--Resource limits-- >cpu time (seconds, -t) unlimited >file size (512-blocks, -f) unlimited >data seg size (kbytes, -d) 33554432 >stack size (kbytes, -s) 524288 >core file size (512-blocks, -c) unlimited >max memory size (kbytes, -m) unlimited >locked memory (kbytes, -l) unlimited >max user processes (-u) 19400 >open files (-n) 1024 >virtual mem size (kbytes, -v) unlimited >swap limit (kbytes, -w) unlimited >socket buffer size (bytes, -b) unlimited >pseudo-terminals (-p) unlimited >kqueues (-k) unlimited >umtx shared locks (-o) unlimited >--End resource limits-- >=======================<phase: check-sanity >============================ >===> License LatticeLib accepted by the user >=========================================================================== >=======================<phase: pkg-depends >============================ >===> treekin-0.5.1_2 depends on file: /usr/local/sbin/pkg - not found >===> Installing existing package /packages/All/pkg-1.14.6.txz >[13amd64-default] Installing pkg-1.14.6... >[13amd64-default] Extracting pkg-1.14.6: .......... done >===> treekin-0.5.1_2 depends on file: /usr/local/sbin/pkg - found >===> Returning to build of treekin-0.5.1_2 >=========================================================================== >=======================<phase: fetch-depends >============================ >=========================================================================== >=======================<phase: fetch >============================ >===> License LatticeLib accepted by the user >===> treekin-0.5.1_2 depends on file: /usr/local/sbin/pkg - found >===> Fetching all distfiles required by treekin-0.5.1_2 for building >=========================================================================== >=======================<phase: checksum >============================ >===> License LatticeLib accepted by the user >===> treekin-0.5.1_2 depends on file: /usr/local/sbin/pkg - found >===> Fetching all distfiles required by treekin-0.5.1_2 for building >=> SHA256 Checksum OK for Treekin-0.5.1.tar.gz. >=========================================================================== >=======================<phase: extract-depends>============================ >=========================================================================== >=======================<phase: extract >============================ >===> License LatticeLib accepted by the user >===> treekin-0.5.1_2 depends on file: /usr/local/sbin/pkg - found >===> Fetching all distfiles required by treekin-0.5.1_2 for building >===> Extracting for treekin-0.5.1_2 >=> SHA256 Checksum OK for Treekin-0.5.1.tar.gz. >=========================================================================== >=======================<phase: patch-depends >============================ >=========================================================================== >=======================<phase: patch >============================ >===> Patching for treekin-0.5.1_2 >=========================================================================== >=======================<phase: build-depends >============================ >===> treekin-0.5.1_2 depends on package: lapacke>0 - not found >===> Installing existing package /packages/All/lapacke-3.9.0.txz >[13amd64-default] Installing lapacke-3.9.0... >[13amd64-default] `-- Installing blas-3.9.0... >[13amd64-default] | `-- Installing gcc9-9.3.0_1... >[13amd64-default] | | `-- Installing binutils-2.33.1_2,1... >[13amd64-default] | | `-- Installing gettext-runtime-0.20.2... >[13amd64-default] | | | `-- Installing indexinfo-0.3.1... >[13amd64-default] | | | `-- Extracting indexinfo-0.3.1: .... done >[13amd64-default] | | `-- Extracting gettext-runtime-0.20.2: .......... done >[13amd64-default] | | `-- Extracting binutils-2.33.1_2,1: .......... done >[13amd64-default] | | `-- Installing gmp-6.2.0... >[13amd64-default] | | `-- Extracting gmp-6.2.0: .......... done >[13amd64-default] | | `-- Installing mpc-1.1.0_2... >[13amd64-default] | | `-- Installing mpfr-4.0.2... >[13amd64-default] | | `-- Extracting mpfr-4.0.2: .......... done >[13amd64-default] | | `-- Extracting mpc-1.1.0_2: ......... done >[13amd64-default] | `-- Extracting gcc9-9.3.0_1: .......... done >[13amd64-default] `-- Extracting blas-3.9.0: ........ done >[13amd64-default] `-- Installing lapack-3.9.0... >[13amd64-default] `-- Extracting lapack-3.9.0: .......... done >[13amd64-default] Extracting lapacke-3.9.0: .......... done >===== >Message from gcc9-9.3.0_1: > >-- >To ensure binaries built with this toolchain find appropriate versions >of the necessary run-time libraries, you may want to link using > > -Wl,-rpath=/usr/local/lib/gcc9 > >For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens >transparently. >===> treekin-0.5.1_2 depends on package: lapacke>0 - found >===> Returning to build of treekin-0.5.1_2 >===> treekin-0.5.1_2 depends on executable: gfortran9 - found >===> treekin-0.5.1_2 depends on package: gmake>=4.3 - not found >===> Installing existing package /packages/All/gmake-4.3_2.txz >[13amd64-default] Installing gmake-4.3_2... >[13amd64-default] Extracting gmake-4.3_2: .......... done >===> treekin-0.5.1_2 depends on package: gmake>=4.3 - found >===> Returning to build of treekin-0.5.1_2 >===> treekin-0.5.1_2 depends on file: /usr/local/bin/as - found >===> treekin-0.5.1_2 depends on file: /usr/local/bin/ccache - not found >===> Installing existing package /packages/All/ccache-3.7.1_1.txz >[13amd64-default] Installing ccache-3.7.1_1... >[13amd64-default] Extracting ccache-3.7.1_1: .......... done >Create compiler links... >create symlink for cc >create symlink for cc (world) >create symlink for c++ >create symlink for c++ (world) >create symlink for CC >create symlink for CC (world) >create symlink for gcc9 >create symlink for gcc9 (world) >create symlink for g++9 >create symlink for g++9 (world) >create symlink for cpp9 >create symlink for cpp9 (world) >create symlink for clang >create symlink for clang (world) >create symlink for clang++ >create symlink for clang++ (world) >===== >Message from ccache-3.7.1_1: > >-- >NOTE: >Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for >information on using ccache with FreeBSD ports and src. >===> treekin-0.5.1_2 depends on file: /usr/local/bin/ccache - found >===> Returning to build of treekin-0.5.1_2 >=========================================================================== >=======================<phase: lib-depends >============================ >===> treekin-0.5.1_2 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) >===> treekin-0.5.1_2 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) >=========================================================================== >=>> Recording filesystem state for prebuild... done >=======================<phase: configure >============================ >===> treekin-0.5.1_2 depends on package: lapacke>0 - found >===> treekin-0.5.1_2 depends on executable: gfortran9 - found >===> treekin-0.5.1_2 depends on package: gmake>=4.3 - found >===> treekin-0.5.1_2 depends on file: /usr/local/bin/as - found >===> treekin-0.5.1_2 depends on file: /usr/local/bin/ccache - found >===> treekin-0.5.1_2 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) >===> treekin-0.5.1_2 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) >===> Configuring for treekin-0.5.1_2 >configure: loading site script /usr/ports/Templates/config.site >checking whether gmake supports nested variables... yes >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p >checking for gawk... (cached) /usr/bin/awk >checking whether gmake sets $(MAKE)... yes >checking build system type... amd64-portbld-freebsd13.0 >checking host system type... amd64-portbld-freebsd13.0 >checking whether the C++ compiler works... yes >checking for C++ compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C++ compiler... yes >checking whether c++ accepts -g... yes >checking for style of include used by gmake... GNU >checking dependency style of c++... gcc3 >checking for gcc... cc >checking whether we are using the GNU C compiler... yes >checking whether cc accepts -g... yes >checking for cc option to accept ISO C89... none needed >checking whether cc understands -c and -o together... yes >checking dependency style of cc... gcc3 >checking for ranlib... /usr/local/bin/ranlib >checking whether gmake sets $(MAKE)... (cached) yes >checking for autoconf... autoconf >checking for aclocal... aclocal >checking for make... /wrkdirs/usr/ports/biology/treekin/work/.bin/make >checking for ar... /usr/local/bin/ar >checking whether c++ supports C++11 features with -std=gnu++11... yes >checking for gengetopt... no >checking for sgemm_... no >checking for ATL_xerbla in -latlas... no >checking for sgemm_ in -lblas... yes >checking for dgemm_ in -ldgemm... no >checking for sgemm_ in -lmkl... no >checking for sgemm_... (cached) no >checking for sgemm_ in -lcxml... no >checking for sgemm_ in -ldxml... no >checking for sgemm_ in -lscs... no >checking for sgemm_ in -lcomplib.sgimath... no >checking for sgemm_ in -lblas... (cached) yes >checking for sgemm_ in -lessl... no >checking for sgemm_ in -lblas... (cached) yes >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether gfortran9 accepts -g... yes >checking how to get verbose linking output from gfortran9... -v >checking for Fortran 77 libraries of gfortran9... -L/usr/local/lib -L/usr/local/lib/gcc9 -L/usr/local/bin -L/usr/local/lib/gcc9/gcc/x86_64-portbld-freebsd13.0/9.3.0 -L/usr/local/lib/gcc9/gcc/x86_64-portbld-freebsd13.0/9.3.0/../../../../../x86_64-portbld-freebsd13.0/lib -L/usr/local/lib/gcc9/gcc/x86_64-portbld-freebsd13.0/9.3.0/../../.. -lgfortran -lm -lssp_nonshared -lquadmath >checking for dummy main to link with Fortran 77 libraries... none >checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore >checking how to run the C preprocessor... cpp >checking for grep that handles long lines and -e... (cached) /usr/bin/grep >checking for egrep... (cached) /usr/bin/egrep >checking for ANSI C header files... (cached) yes >checking for sys/types.h... (cached) yes >checking for sys/stat.h... (cached) yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking for memory.h... (cached) yes >checking for strings.h... (cached) yes >checking for inttypes.h... (cached) yes >checking for stdint.h... (cached) yes >checking for unistd.h... (cached) yes >checking for cheev_... no >checking for cheev_ in -llapack... yes >checking openblas/lapacke.h usability... no >checking openblas/lapacke.h presence... no >checking for openblas/lapacke.h... no >checking lapacke/lapacke.h usability... yes >checking lapacke/lapacke.h presence... yes >checking for lapacke/lapacke.h... yes >checking for ANSI C header files... (cached) yes >checking for errno.h... (cached) yes >checking for math.h... (cached) yes >checking for pkg-config... no >checking how to run the C++ preprocessor... c++ -std=gnu++11 -E >checking for mlapack... no >configure: WARNING: >********************************************************************** >Failed to setup linking the program against the MLAPACK library. > >In case you have installed mlapack in a non-standard directory, consider >using the > > --with-mlapack=/path/to/mlapack > >parameter to specify the location where to find MLAPACK. >Otherwise, you can obtain the mlapack library from > >https://github.com/RaumZeit/mlapack > >********************************************************************** > >checking whether byte ordering is bigendian... no >checking for an ANSI C-conforming const... yes >checking for size_t... (cached) yes >checking for help2man... no >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile >config.status: creating src/Makefile >config.status: creating packaging/treekin.spec >config.status: creating packaging/PKGBUILD >config.status: creating packaging/treekin-mlapack.spec >config.status: creating packaging/PKGBUILD-mlapack >config.status: creating man/Makefile >config.status: creating man/cmdlopt.sh >config.status: creating config.h >config.status: executing depfiles commands >configure: > >====================================== > Treekin 0.5.1 >====================================== > >Configured successful with the following options: > >Extra Libraries >--------------- > * MLapack : no ( mlapack library missing or not of version 0.8 or higher ) > >Install Directories >------------------- > * Executables : /usr/local/bin > * Libraries : /usr/local/lib > * Header files : /usr/local/include > * Extra Data : /usr/local/share > * Man pages : /usr/local/man > >Note, that the most recent version of the DrTransformer program requires Treekin to be linked against the MLAPACK library! > >You can run make now. > >=========================================================================== >=======================<phase: build >============================ >===> Building for treekin-0.5.1_2 >gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/treekin/work/Treekin-0.5.1' >/wrkdirs/usr/ports/biology/treekin/work/.bin/make all-recursive >make[2]: Entering directory '/wrkdirs/usr/ports/biology/treekin/work/Treekin-0.5.1' >Making all in src >make[3]: Entering directory '/wrkdirs/usr/ports/biology/treekin/work/Treekin-0.5.1/src' >c++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT treekin-mxccm.o -MD -MP -MF .deps/treekin-mxccm.Tpo -c -o treekin-mxccm.o `test -f 'mxccm.cpp' || echo './'`mxccm.cpp >c++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT treekin-globals.o -MD -MP -MF .deps/treekin-globals.Tpo -c -o treekin-globals.o `test -f 'globals.cpp' || echo './'`globals.cpp >c++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT treekin-barparser.o -MD -MP -MF .deps/treekin-barparser.Tpo -c -o treekin-barparser.o `test -f 'barparser.cpp' || echo './'`barparser.cpp >c++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT treekin-calcpp.o -MD -MP -MF .deps/treekin-calcpp.Tpo -c -o treekin-calcpp.o `test -f 'calcpp.cpp' || echo './'`calcpp.cpp >c++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT treekin-calc.o -MD -MP -MF .deps/treekin-calc.Tpo -c -o treekin-calc.o `test -f 'calc.cpp' || echo './'`calc.cpp >c++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT treekin-exp_matrix.o -MD -MP -MF .deps/treekin-exp_matrix.Tpo -c -o treekin-exp_matrix.o `test -f 'exp_matrix.cpp' || echo './'`exp_matrix.cpp >cc -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT treekin-treekin_cmdline.o -MD -MP -MF .deps/treekin-treekin_cmdline.Tpo -c -o treekin-treekin_cmdline.o `test -f 'treekin_cmdline.c' || echo './'`treekin_cmdline.c >c++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT treekin-main.o -MD -MP -MF .deps/treekin-main.Tpo -c -o treekin-main.o `test -f 'main.cpp' || echo './'`main.cpp >mv -f .deps/treekin-treekin_cmdline.Tpo .deps/treekin-treekin_cmdline.Po >mv -f .deps/treekin-mxccm.Tpo .deps/treekin-mxccm.Po >mv -f .deps/treekin-globals.Tpo .deps/treekin-globals.Po >mv -f .deps/treekin-barparser.Tpo .deps/treekin-barparser.Po >mv -f .deps/treekin-exp_matrix.Tpo .deps/treekin-exp_matrix.Po >In file included from calcpp.cpp:6: >In file included from ./calcpp.h:52: >In file included from /usr/local/include/lapacke/lapacke.h:37: >In file included from /usr/local/include/lapacke/lapack.h:55: >In file included from /usr/include/c++/v1/complex.h:28: >In file included from /usr/include/c++/v1/ccomplex:20: >In file included from /usr/include/c++/v1/complex:244: >In file included from /usr/include/c++/v1/stdexcept:45: >/usr/include/c++/v1/exception:167:1: error: templates must have C++ linkage >template<class _Ep> >^~~~~~~~~~~~~~~~~~~ >/usr/local/include/lapacke/lapack.h:16:1: note: extern "C" language linkage specification begins here >extern "C" { >^ >In file included from calcpp.cpp:6: >In file included from ./calcpp.h:52: >In file included from /usr/local/include/lapacke/lapacke.h:37: >In file included from /usr/local/include/lapacke/lapack.h:55: >In file included from /usr/include/c++/v1/complex.h:28: >In file included from /usr/include/c++/v1/ccomplex:20: >In file included from /usr/include/c++/v1/complex:244: >In file included from /usr/include/c++/v1/stdexcept:45: >/usr/include/c++/v1/exception:250:1: error: templates must have C++ linkage >template <class _Tp> >^~~~~~~~~~~~~~~~~~~~ >/usr/local/include/lapacke/lapack.h:16:1: note: extern "C" language linkage specification begins here >extern "C" { >^ >In file included from calcpp.cpp:6: >In file included from ./calcpp.h:52: >In file included from /usr/local/include/lapacke/lapacke.h:37: >In file included from /usr/local/include/lapacke/lapack.h:55: >In file included from /usr/include/c++/v1/complex.h:28: >In file included from /usr/include/c++/v1/ccomplex:20: >In file included from /usr/include/c++/v1/complex:244: >In file included from /usr/include/c++/v1/stdexcept:45: >/usr/include/c++/v1/exception:259:1: error: templates must have C++ linkage >template <class _Tp, class _Up, bool> >^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/usr/local/include/lapacke/lapack.h:16:1: note: extern "C" language linkage specification begins here >extern "C" { >^ >In file included from calcpp.cpp:6: >In file included from ./calcpp.h:52: >In file included from /usr/local/include/lapacke/lapacke.h:37: >In file included from /usr/local/include/lapacke/lapack.h:55: >In file included from /usr/include/c++/v1/complex.h:28: >In file included from /usr/include/c++/v1/ccomplex:20: >In file included from /usr/include/c++/v1/complex:244: >In file included from /usr/include/c++/v1/stdexcept:45: >/usr/include/c++/v1/exception:263:8: error: explicit specialization of undeclared template struct '__throw_with_nested' >struct __throw_with_nested<_Tp, _Up, true> { > ^ ~~~~~~~~~~~~~~~~ >/usr/include/c++/v1/exception:262:1: error: templates must have C++ linkage >template <class _Tp, class _Up> >^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/usr/local/include/lapacke/lapack.h:16:1: note: extern "C" language linkage specification begins here >extern "C" { >^ >In file included from calcpp.cpp:6: >In file included from ./calcpp.h:52: >In file included from /usr/local/include/lapacke/lapacke.h:37: >In file included from /usr/local/include/lapacke/lapack.h:55: >In file included from /usr/include/c++/v1/complex.h:28: >In file included from /usr/include/c++/v1/ccomplex:20: >In file included from /usr/include/c++/v1/complex:244: >In file included from /usr/include/c++/v1/stdexcept:45: >/usr/include/c++/v1/exception:272:8: error: explicit specialization of undeclared template struct '__throw_with_nested' >struct __throw_with_nested<_Tp, _Up, false> { > ^ ~~~~~~~~~~~~~~~~~ >/usr/include/c++/v1/exception:271:1: error: templates must have C++ linkage >template <class _Tp, class _Up> >^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/usr/local/include/lapacke/lapack.h:16:1: note: extern "C" language linkage specification begins here >extern "C" { >^ >In file included from calcpp.cpp:6: >In file included from ./calcpp.h:52: >In file included from /usr/local/include/lapacke/lapacke.h:37: >In file included from /usr/local/include/lapacke/lapack.h:55: >In file included from /usr/include/c++/v1/complex.h:28: >In file included from /usr/include/c++/v1/ccomplex:20: >In file included from /usr/include/c++/v1/complex:244: >In file included from /usr/include/c++/v1/stdexcept:45: >/usr/include/c++/v1/exception:285:1: error: templates must have C++ linkage >template <class _Tp> >^~~~~~~~~~~~~~~~~~~~ >/usr/local/include/lapacke/lapack.h:16:1: note: extern "C" language linkage specification begins here >extern "C" { >^ >In file included from calcpp.cpp:6: >In file included from ./calcpp.h:52: >In file included from /usr/local/include/lapacke/lapacke.h:37: >In file included from /usr/local/include/lapacke/lapack.h:55: >In file included from /usr/include/c++/v1/complex.h:28: >In file included from /usr/include/c++/v1/ccomplex:20: >In file included from /usr/include/c++/v1/complex:244: >In file included from /usr/include/c++/v1/stdexcept:45: >/usr/include/c++/v1/exception:293:5: error: no template named '__throw_with_nested' > __throw_with_nested<_Tp, _Up, > ^ >/usr/include/c++/v1/exception:304:1: error: templates must have C++ linkage >template <class _From, class _To> >^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/usr/local/include/lapacke/lapack.h:16:1: note: extern "C" language linkage specification begins here >extern "C" { >^ >In file included from calcpp.cpp:6: >In file included from ./calcpp.h:52: >In file included from /usr/local/include/lapacke/lapacke.h:37: >In file included from /usr/local/include/lapacke/lapack.h:55: >In file included from /usr/include/c++/v1/complex.h:28: >In file included from /usr/include/c++/v1/ccomplex:20: >In file included from /usr/include/c++/v1/complex:244: >In file included from /usr/include/c++/v1/stdexcept:45: >/usr/include/c++/v1/exception:314:39: error: no template named '__can_dynamic_cast' > typename enable_if< __can_dynamic_cast<_Ep, nested_exception>::value>::type* = 0) > ^ >/usr/include/c++/v1/exception:314:90: error: parameter declarator cannot be qualified > typename enable_if< __can_dynamic_cast<_Ep, nested_exception>::value>::type* = 0) > ~~^ >/usr/include/c++/v1/exception:314:94: error: expected ')' > typename enable_if< __can_dynamic_cast<_Ep, nested_exception>::value>::type* = 0) > ^ >/usr/include/c++/v1/exception:313:18: note: to match this '(' >rethrow_if_nested(const _Ep& __e, > ^ >/usr/include/c++/v1/exception:310:1: error: templates must have C++ linkage >template <class _Ep> >^~~~~~~~~~~~~~~~~~~~ >/usr/local/include/lapacke/lapack.h:16:1: note: extern "C" language linkage specification begins here >extern "C" { >^ >In file included from calcpp.cpp:6: >In file included from ./calcpp.h:52: >In file included from /usr/local/include/lapacke/lapacke.h:37: >In file included from /usr/local/include/lapacke/lapack.h:55: >In file included from /usr/include/c++/v1/complex.h:28: >In file included from /usr/include/c++/v1/ccomplex:20: >In file included from /usr/include/c++/v1/complex:244: >In file included from /usr/include/c++/v1/stdexcept:45: >/usr/include/c++/v1/exception:325:39: error: no template named '__can_dynamic_cast' > typename enable_if<!__can_dynamic_cast<_Ep, nested_exception>::value>::type* = 0) > ^ >/usr/include/c++/v1/exception:325:90: error: parameter declarator cannot be qualified > typename enable_if<!__can_dynamic_cast<_Ep, nested_exception>::value>::type* = 0) > ~~^ >/usr/include/c++/v1/exception:325:94: error: expected ')' > typename enable_if<!__can_dynamic_cast<_Ep, nested_exception>::value>::type* = 0) > ^ >/usr/include/c++/v1/exception:324:18: note: to match this '(' >rethrow_if_nested(const _Ep&, > ^ >/usr/include/c++/v1/exception:321:1: error: templates must have C++ linkage >template <class _Ep> >^~~~~~~~~~~~~~~~~~~~ >/usr/local/include/lapacke/lapack.h:16:1: note: extern "C" language linkage specification begins here >extern "C" { >^ >In file included from calcpp.cpp:6: >In file included from ./calcpp.h:52: >In file included from /usr/local/include/lapacke/lapacke.h:37: >In file included from /usr/local/include/lapacke/lapack.h:55: >In file included from /usr/include/c++/v1/complex.h:28: >In file included from /usr/include/c++/v1/ccomplex:20: >In file included from /usr/include/c++/v1/complex:244: >In file included from /usr/include/c++/v1/stdexcept:46: >/usr/include/c++/v1/iosfwd:105:1: error: templates must have C++ linkage >template<class _CharT> struct _LIBCPP_TEMPLATE_VIS char_traits; >^~~~~~~~~~~~~~~~~~~~~~ >/usr/local/include/lapacke/lapack.h:16:1: note: extern "C" language linkage specification begins here >extern "C" { >^ >fatal error: too many errors emitted, stopping now [-ferror-limit=] >20 errors generated. >make[3]: *** [Makefile:514: treekin-calcpp.o] Error 1 >make[3]: *** Waiting for unfinished jobs.... >In file included from calc.cpp:6: >In file included from ./calc.h:30: >In file included from ./calcpp.h:52: >In file included from /usr/local/include/lapacke/lapacke.h:37: >In file included from /usr/local/include/lapacke/lapack.h:55: >In file included from /usr/include/c++/v1/complex.h:28: >In file included from /usr/include/c++/v1/ccomplex:20: >In file included from /usr/include/c++/v1/complex:246: >In file included from /usr/include/c++/v1/sstream:173: >In file included from /usr/include/c++/v1/ostream:138: >In file included from /usr/include/c++/v1/ios:215: >In file included from /usr/include/c++/v1/__locale:14: >In file included from /usr/include/c++/v1/string:504: >In file included from /usr/include/c++/v1/string_view:175: >/usr/include/c++/v1/__string:75:1: error: templates must have C++ linkage >template <class _CharT> >^~~~~~~~~~~~~~~~~~~~~~~ >/usr/local/include/lapacke/lapack.h:16:1: note: extern "C" language linkage specification begins here >extern "C" { >^ >In file included from calc.cpp:6: >In file included from ./calc.h:30: >In file included from ./calcpp.h:52: >In file included from /usr/local/include/lapacke/lapacke.h:37: >In file included from /usr/local/include/lapacke/lapack.h:55: >In file included from /usr/include/c++/v1/complex.h:28: >In file included from /usr/include/c++/v1/ccomplex:20: >In file included from /usr/include/c++/v1/complex:246: >In file included from /usr/include/c++/v1/sstream:173: >In file included from /usr/include/c++/v1/ostream:138: >In file included from /usr/include/c++/v1/ios:215: >In file included from /usr/include/c++/v1/__locale:14: >In file included from /usr/include/c++/v1/string:504: >In file included from /usr/include/c++/v1/string_view:175: >/usr/include/c++/v1/__string:120:36: error: unknown type name 'char_type' >char_traits<_CharT>::compare(const char_type* __s1, const char_type* __s2, size_t __n) > ^ >/usr/include/c++/v1/__string:120:59: error: unknown type name 'char_type' >char_traits<_CharT>::compare(const char_type* __s1, const char_type* __s2, size_t __n) > ^ >/usr/include/c++/v1/__string:120:22: error: out-of-line definition of 'compare' from class 'char_traits<_CharT>' without definition >char_traits<_CharT>::compare(const char_type* __s1, const char_type* __s2, size_t __n) >~~~~~~~~~~~~~~~~~~~~~^ >/usr/include/c++/v1/__string:122:12: error: use of undeclared identifier '__n'; did you mean '__1'? > for (; __n; --__n, ++__s1, ++__s2) > ^ >/usr/include/c++/v1/__string:71:1: note: '__1' declared here >_LIBCPP_BEGIN_NAMESPACE_STD >^ >/usr/include/c++/v1/__config:780:70: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' >#define _LIBCPP_BEGIN_NAMESPACE_STD namespace std { inline namespace _LIBCPP_ABI_NAMESPACE { > ^ >/usr/include/c++/v1/__config:130:32: note: expanded from macro '_LIBCPP_ABI_NAMESPACE' ># define _LIBCPP_ABI_NAMESPACE _LIBCPP_CONCAT(__,_LIBCPP_ABI_VERSION) > ^ >/usr/include/c++/v1/__config:127:45: note: expanded from macro '_LIBCPP_CONCAT' >#define _LIBCPP_CONCAT(_LIBCPP_X,_LIBCPP_Y) _LIBCPP_CONCAT1(_LIBCPP_X,_LIBCPP_Y) > ^ >/usr/include/c++/v1/__config:126:46: note: expanded from macro '_LIBCPP_CONCAT1' >#define _LIBCPP_CONCAT1(_LIBCPP_X,_LIBCPP_Y) _LIBCPP_X##_LIBCPP_Y > ^ ><scratch space>:570:1: note: expanded from here >__1 >^ >In file included from calc.cpp:6: >In file included from ./calc.h:30: >In file included from ./calcpp.h:52: >In file included from /usr/local/include/lapacke/lapacke.h:37: >In file included from /usr/local/include/lapacke/lapack.h:55: >In file included from /usr/include/c++/v1/complex.h:28: >In file included from /usr/include/c++/v1/ccomplex:20: >In file included from /usr/include/c++/v1/complex:246: >In file included from /usr/include/c++/v1/sstream:173: >In file included from /usr/include/c++/v1/ostream:138: >In file included from /usr/include/c++/v1/ios:215: >In file included from /usr/include/c++/v1/__locale:14: >In file included from /usr/include/c++/v1/string:504: >In file included from /usr/include/c++/v1/string_view:175: >/usr/include/c++/v1/__string:122:12: error: unexpected namespace name '__1': expected expression > for (; __n; --__n, ++__s1, ++__s2) > ^ >/usr/include/c++/v1/__string:122:19: error: use of undeclared identifier '__n' > for (; __n; --__n, ++__s1, ++__s2) > ^ >/usr/include/c++/v1/__string:122:26: error: use of undeclared identifier '__s1' > for (; __n; --__n, ++__s1, ++__s2) > ^ >/usr/include/c++/v1/__string:122:34: error: use of undeclared identifier '__s2' > for (; __n; --__n, ++__s1, ++__s2) > ^ >/usr/include/c++/v1/__string:124:17: error: use of undeclared identifier '__s1' > if (lt(*__s1, *__s2)) > ^ >/usr/include/c++/v1/__string:124:24: error: use of undeclared identifier '__s2' > if (lt(*__s1, *__s2)) > ^ >/usr/include/c++/v1/__string:126:17: error: use of undeclared identifier '__s2' > if (lt(*__s2, *__s1)) > ^ >/usr/include/c++/v1/__string:126:24: error: use of undeclared identifier '__s1' > if (lt(*__s2, *__s1)) > ^ >/usr/include/c++/v1/__string:135:35: error: unknown type name 'char_type' >char_traits<_CharT>::length(const char_type* __s) > ^ >/usr/include/c++/v1/__string:135:22: error: out-of-line definition of 'length' from class 'char_traits<_CharT>' without definition >char_traits<_CharT>::length(const char_type* __s) >~~~~~~~~~~~~~~~~~~~~~^ >/usr/include/c++/v1/__string:138:22: error: use of undeclared identifier 'char_type' > for (; !eq(*__s, char_type(0)); ++__s) > ^ >/usr/include/c++/v1/__string:138:17: error: use of undeclared identifier '__s' > for (; !eq(*__s, char_type(0)); ++__s) > ^ >/usr/include/c++/v1/__string:138:39: error: use of undeclared identifier '__s' > for (; !eq(*__s, char_type(0)); ++__s) > ^ >/usr/include/c++/v1/__string:146:33: error: unknown type name 'char_type' >char_traits<_CharT>::find(const char_type* __s, size_t __n, const char_type& __a) > ^ >fatal error: too many errors emitted, stopping now [-ferror-limit=] >20 errors generated. >make[3]: *** [Makefile:528: treekin-calc.o] Error 1 >In file included from main.cpp:16: >In file included from ./calc.h:30: >In file included from ./calcpp.h:52: >In file included from /usr/local/include/lapacke/lapacke.h:37: >In file included from /usr/local/include/lapacke/lapack.h:55: >In file included from /usr/include/c++/v1/complex.h:28: >In file included from /usr/include/c++/v1/ccomplex:20: >In file included from /usr/include/c++/v1/complex:246: >In file included from /usr/include/c++/v1/sstream:173: >In file included from /usr/include/c++/v1/ostream:138: >In file included from /usr/include/c++/v1/ios:215: >In file included from /usr/include/c++/v1/__locale:14: >In file included from /usr/include/c++/v1/string:504: >In file included from /usr/include/c++/v1/string_view:175: >/usr/include/c++/v1/__string:75:1: error: templates must have C++ linkage >template <class _CharT> >^~~~~~~~~~~~~~~~~~~~~~~ >/usr/local/include/lapacke/lapack.h:16:1: note: extern "C" language linkage specification begins here >extern "C" { >^ >In file included from main.cpp:16: >In file included from ./calc.h:30: >In file included from ./calcpp.h:52: >In file included from /usr/local/include/lapacke/lapacke.h:37: >In file included from /usr/local/include/lapacke/lapack.h:55: >In file included from /usr/include/c++/v1/complex.h:28: >In file included from /usr/include/c++/v1/ccomplex:20: >In file included from /usr/include/c++/v1/complex:246: >In file included from /usr/include/c++/v1/sstream:173: >In file included from /usr/include/c++/v1/ostream:138: >In file included from /usr/include/c++/v1/ios:215: >In file included from /usr/include/c++/v1/__locale:14: >In file included from /usr/include/c++/v1/string:504: >In file included from /usr/include/c++/v1/string_view:175: >/usr/include/c++/v1/__string:120:36: error: unknown type name 'char_type' >char_traits<_CharT>::compare(const char_type* __s1, const char_type* __s2, size_t __n) > ^ >/usr/include/c++/v1/__string:120:59: error: unknown type name 'char_type' >char_traits<_CharT>::compare(const char_type* __s1, const char_type* __s2, size_t __n) > ^ >/usr/include/c++/v1/__string:120:22: error: out-of-line definition of 'compare' from class 'char_traits<_CharT>' without definition >char_traits<_CharT>::compare(const char_type* __s1, const char_type* __s2, size_t __n) >~~~~~~~~~~~~~~~~~~~~~^ >/usr/include/c++/v1/__string:122:12: error: use of undeclared identifier '__n'; did you mean '__1'? > for (; __n; --__n, ++__s1, ++__s2) > ^ >/usr/include/c++/v1/__string:71:1: note: '__1' declared here >_LIBCPP_BEGIN_NAMESPACE_STD >^ >/usr/include/c++/v1/__config:780:70: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' >#define _LIBCPP_BEGIN_NAMESPACE_STD namespace std { inline namespace _LIBCPP_ABI_NAMESPACE { > ^ >/usr/include/c++/v1/__config:130:32: note: expanded from macro '_LIBCPP_ABI_NAMESPACE' ># define _LIBCPP_ABI_NAMESPACE _LIBCPP_CONCAT(__,_LIBCPP_ABI_VERSION) > ^ >/usr/include/c++/v1/__config:127:45: note: expanded from macro '_LIBCPP_CONCAT' >#define _LIBCPP_CONCAT(_LIBCPP_X,_LIBCPP_Y) _LIBCPP_CONCAT1(_LIBCPP_X,_LIBCPP_Y) > ^ >/usr/include/c++/v1/__config:126:46: note: expanded from macro '_LIBCPP_CONCAT1' >#define _LIBCPP_CONCAT1(_LIBCPP_X,_LIBCPP_Y) _LIBCPP_X##_LIBCPP_Y > ^ ><scratch space>:570:1: note: expanded from here >__1 >^ >In file included from main.cpp:16: >In file included from ./calc.h:30: >In file included from ./calcpp.h:52: >In file included from /usr/local/include/lapacke/lapacke.h:37: >In file included from /usr/local/include/lapacke/lapack.h:55: >In file included from /usr/include/c++/v1/complex.h:28: >In file included from /usr/include/c++/v1/ccomplex:20: >In file included from /usr/include/c++/v1/complex:246: >In file included from /usr/include/c++/v1/sstream:173: >In file included from /usr/include/c++/v1/ostream:138: >In file included from /usr/include/c++/v1/ios:215: >In file included from /usr/include/c++/v1/__locale:14: >In file included from /usr/include/c++/v1/string:504: >In file included from /usr/include/c++/v1/string_view:175: >/usr/include/c++/v1/__string:122:12: error: unexpected namespace name '__1': expected expression > for (; __n; --__n, ++__s1, ++__s2) > ^ >/usr/include/c++/v1/__string:122:19: error: use of undeclared identifier '__n' > for (; __n; --__n, ++__s1, ++__s2) > ^ >/usr/include/c++/v1/__string:122:26: error: use of undeclared identifier '__s1' > for (; __n; --__n, ++__s1, ++__s2) > ^ >/usr/include/c++/v1/__string:122:34: error: use of undeclared identifier '__s2' > for (; __n; --__n, ++__s1, ++__s2) > ^ >/usr/include/c++/v1/__string:124:17: error: use of undeclared identifier '__s1' > if (lt(*__s1, *__s2)) > ^ >/usr/include/c++/v1/__string:124:24: error: use of undeclared identifier '__s2' > if (lt(*__s1, *__s2)) > ^ >/usr/include/c++/v1/__string:126:17: error: use of undeclared identifier '__s2' > if (lt(*__s2, *__s1)) > ^ >/usr/include/c++/v1/__string:126:24: error: use of undeclared identifier '__s1' > if (lt(*__s2, *__s1)) > ^ >/usr/include/c++/v1/__string:135:35: error: unknown type name 'char_type' >char_traits<_CharT>::length(const char_type* __s) > ^ >/usr/include/c++/v1/__string:135:22: error: out-of-line definition of 'length' from class 'char_traits<_CharT>' without definition >char_traits<_CharT>::length(const char_type* __s) >~~~~~~~~~~~~~~~~~~~~~^ >/usr/include/c++/v1/__string:138:22: error: use of undeclared identifier 'char_type' > for (; !eq(*__s, char_type(0)); ++__s) > ^ >/usr/include/c++/v1/__string:138:17: error: use of undeclared identifier '__s' > for (; !eq(*__s, char_type(0)); ++__s) > ^ >/usr/include/c++/v1/__string:138:39: error: use of undeclared identifier '__s' > for (; !eq(*__s, char_type(0)); ++__s) > ^ >/usr/include/c++/v1/__string:146:33: error: unknown type name 'char_type' >char_traits<_CharT>::find(const char_type* __s, size_t __n, const char_type& __a) > ^ >fatal error: too many errors emitted, stopping now [-ferror-limit=] >20 errors generated. >make[3]: *** [Makefile:556: treekin-main.o] Error 1 >make[3]: Leaving directory '/wrkdirs/usr/ports/biology/treekin/work/Treekin-0.5.1/src' >make[2]: *** [Makefile:411: all-recursive] Error 1 >make[2]: Leaving directory '/wrkdirs/usr/ports/biology/treekin/work/Treekin-0.5.1' >gmake[1]: *** [Makefile:344: all] Error 2 >gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/treekin/work/Treekin-0.5.1' >===> Compilation failed unexpectedly. >Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to >the maintainer. >*** Error code 1 > >Stop. >make: stopped in /usr/ports/biology/treekin >build of biology/treekin | treekin-0.5.1_2 ended at Thu Jul 9 18:59:17 CEST 2020 >build time: 00:00:14 >!!! build failure encountered !!!
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bug 247939
: 216410