Attachment #217125 for bug #242546




# Created by: maintainer.freebsd@xpoundit.com
# $FreeBSD$

PORTNAME=	orthanc
PORTVERSION=	1.7.2
CATEGORIES=	science
CATEGORIES=	science graphics net www
MASTER_SITES=	http://orthanc-server.com/downloads/get.php?path=/orthanc/:main \
		http://orthanc.osimis.io/ThirdPartyDownloads/:thirdparty
DISTFILES=	Orthanc-${PORTVERSION}.tar.gz:main \
		civetweb-1.12-fixed.tar.gz:thirdparty \
		e2fsprogs-1.44.5.tar.gz:thirdparty
DIST_SUBDIR=	${PORTNAME}
EXTRACT_ONLY=	Orthanc-${PORTVERSION}.tar.gz

MAINTAINER=	maintainer.freebsd@xpoundit.com
COMMENT=	Orthanc is a DICOM server for healthcare and medical research

# GPLv3 license, with the OpenSSL exception.
LICENSE=	GPLv3
LICENSE_FILE=	${WRKSRC}/COPYING

LIB_DEPENDS=	libboost_atomic.so:devel/boost-libs \
		libcharls.so:graphics/dcmtk \
		libcurl.so:ftp/curl \
		libgtest.so:devel/googletest \
		libicudata.so:devel/icu \
		libjbig.so:graphics/jbigkit \
		libjpeg.so:graphics/jpeg-turbo \
		libjsoncpp.so:devel/jsoncpp \
		libnghttp2.so:www/libnghttp2 \
		libpng16.so:graphics/png \
		libpugixml.so:textproc/pugixml \
		libsqlite3.so:databases/sqlite3 \
		libtiff.so:graphics/tiff \
		libuuid.so:misc/e2fsprogs-libuuid \
		libxml2.so:textproc/libxml2
		libboost_thread.so:devel/boost-libs \
		libboost_system.so:devel/boost-libs \
		libboost_date_time.so:devel/boost-libs \
		libboost_regex.so:devel/boost-libs \
		libboost_locale.so:devel/boost-libs \
		libdcmdsig.so:devel/dcmtk \
		libcharls.so:devel/dcmtk \
		libdcmjpls.so:devel/dcmtk \
		libsqlite3.so:databases/sqlite3 \
		libpng.so:graphics/png \
		libgtest.so:devel/googletest \
		libpugixml.so:textproc/pugixml

USES=		cmake dos2unix iconv jpeg lua python:build ssl

WRKSRC=		${WRKDIR}/Orthanc-${PORTVERSION}
CMAKE_SOURCE_PATH= ${WRKSRC}/OrthancServer
CMAKE_ARGS=	-DDCMTK_LIBRARIES="dcmdsig;charls;dcmjpls" \
		-DDCMTK_DIR="${LOCALBASE}" \
		-DDCMTK_DICTIONARY_DIR="${LOCALBASE}/share/dcmtk" \
		-DUSE_SYSTEM_CIVETWEB=OFF \
		-DUSE_SYSTEM_UUID=OFF \
		-DUNIT_TESTS_WITH_HTTP_CONNEXIONS=OFF \
		-DBUILD_CONNECTIVITY_CHECKS=OFF
CFLAGS+=	-I${LOCALBASE}/include \
		-DNDEBUG
CXXFLAGS+=	-DNDEBUG
DOS2UNIX_FILES=	CMakeLists.txt
USE_LDCONFIG=	yes
USE_RC_SUBR=	orthanc
WRKSRC=		${WRKDIR}/Orthanc-${PORTVERSION}
USERS=		orthanc
GROUPS=		orthanc
PLIST_SUB+=	PORTVERSION=${PORTVERSION}

# This is mongoose sources, downloaded from Orthanc author homepage.  Orthanc
# requires mongoose webserver, but after version 3.8, mongoose developers has
# changed the license from MIT to GPLv2 only. This action made illegal to
# combine new mongoose versions with GPLv3 only Orthanc.
# We download sources manually and pass USE_SYSTEM_MONGOOSE=OFF to Orthanc
# cmake variables to tell that mongoose is not presented on the host OS and
# should be build together with the software instead.
# https://www.mail-archive.com/mongoose-users@googlegroups.com/msg00625.html
post-patch:
	${MKDIR} ${CMAKE_SOURCE_PATH}/ThirdPartyDownloads
	${MKDIR} ${CMAKE_SOURCE_PATH}/Plugins/Samples/ConnectivityChecks/ThirdPartyDownloads
	${CP} ${DISTDIR}/${DIST_SUBDIR}/civetweb-1.12-fixed.tar.gz ${CMAKE_SOURCE_PATH}/ThirdPartyDownloads
	${CP} ${DISTDIR}/${DIST_SUBDIR}/e2fsprogs-1.44.5.tar.gz ${CMAKE_SOURCE_PATH}/ThirdPartyDownloads

# There is no way to disable building of test units without a patch, on other
# hand it brings only one build dependency (devel/googletest) and running it was
# helpful in early bug detection in Debian.
# Some tests require connections to be made to the outside world, this is
# definitely unsupported behaviour and therefor those tests are disabled with
# cmake variable above (-DUNIT_TESTS_WITH_HTTP_CONNEXIONS=OFF).
#
# Tests run is temporary disabled: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=215393
#post-build:
#	@cd ${BUILD_WRKSRC} && ./UnitTests

post-install:
	${MKDIR} ${STAGEDIR}/var/db/orthanc/db/db-v5
	${MKDIR} ${STAGEDIR}${DATADIR}/plugins
	${MKDIR} ${STAGEDIR}${ETCDIR}
	${REINPLACE_CMD} -e 's|%%PREFIX%%|${PREFIX}|g' ${CMAKE_SOURCE_PATH}/Resources/Configuration.json
	${CP} ${CMAKE_SOURCE_PATH}/Resources/Configuration.json ${STAGEDIR}${ETCDIR}/orthanc.json.sample
	${STRIP_CMD} ${STAGEDIR}${DATADIR}/plugins/libServeFolders.so.${PORTVERSION}

.include <bsd.port.mk>

Lines 1-5 Link Here

(-)science/orthanc/distinfo (-5 / +7 lines)
1	TIMESTAMP = 1508149082	1	TIMESTAMP = 1596543829
2	SHA256 (orthanc/Orthanc-1.3.0.tar.gz) = a68b3c3fda8ea5cd065d356b314737634d8088d6ab2380c9ccfa433cc8fe61de	2	SHA256 (orthanc/Orthanc-1.7.2.tar.gz) = ea167b4688db7cd8855a1758f289b21d490e7d97afcc405f12d881b22bf17e9b
3	SIZE (orthanc/Orthanc-1.3.0.tar.gz) = 1231636	3	SIZE (orthanc/Orthanc-1.7.2.tar.gz) = 1644200
4	SHA256 (orthanc/mongoose-3.8.tgz) = 6afc2c377614a01a24b78560a62d1316b29372afe08eae3715b56c877be71c6e	4	SHA256 (orthanc/civetweb-1.12-fixed.tar.gz) = 0e81fc252166302a33abd68e98936fb24d9b008b5816fe50edd6b12256768e41
5	SIZE (orthanc/mongoose-3.8.tgz) = 1577314	5	SIZE (orthanc/civetweb-1.12-fixed.tar.gz) = 3035855
		6	SHA256 (orthanc/e2fsprogs-1.44.5.tar.gz) = 2e211fae27ef74d5af4a4e40b10b8df7f87c655933bd171aab4889bfc4e6d1cc
		7	SIZE (orthanc/e2fsprogs-1.44.5.tar.gz) = 7619237

Lines 1-20 Link Here

(-)science/orthanc/pkg-descr (-16 / +19 lines)
1	Orthanc aims at providing a simple, yet powerful standalone DICOM	1	Orthanc aims at providing a simple, yet powerful standalone DICOM server. It
2	server. It is designed to improve the DICOM flows in hospitals and to	2	is designed to improve the DICOM flows in hospitals and to support research
3	support research about the automated analysis of medical images.	3	about the automated analysis of medical images. Orthanc lets its users focus
		4	on the content of the DICOM files, hiding the complexity of the DICOM format
		5	and of the DICOM protocol.
4		6
5	Orthanc can turn any computer running Windows, Linux, FreeBSD or OS X	7	Orthanc can turn any computer running Windows, Linux, FreeBSD or OS X into a
6	into a DICOM store (in other words, a mini-PACS system). Its	8	DICOM store (in other words, a mini-PACS system). Its architecture is
7	architecture is lightweight and standalone, meaning that no complex	9	lightweight and standalone, meaning that no complex database administration
8	database administration is required, nor the installation of third-party	10	is required, nor the installation of third-party dependencies.
9	dependencies.
10		11
11	What makes Orthanc unique is the fact that it provides a RESTful API.	12	What makes Orthanc unique is the fact that it provides a RESTful API. Thanks
12	Thanks to this major feature, it is possible to drive Orthanc from any	13	to this major feature, it is possible to drive Orthanc from any computer
13	computer language. The DICOM tags of the stored medical images can be	14	language. The DICOM tags of the stored medical images can be downloaded in
14	downloaded in the JSON file format. Furthermore, standard PNG images can	15	the JSON file format. Furthermore, standard PNG images can be generated
15	be generated on-the-fly from the DICOM instances by Orthanc.	16	on-the-fly from the DICOM instances by Orthanc.
16		17
17	Orthanc lets its users focus on the content of the DICOM files, hiding	18	Orthanc also features a plugin mechanism to add new modules that extends the
18	the complexity of the DICOM format and of the DICOM protocol.	19	core capabilities of its REST API. A Web viewer, a PostgreSQL database
		20	back-end, a MySQL database back-end, and a reference implementation of
		21	DICOMweb are currently freely available as plugins.
19		22
20	WWW: http://www.orthanc-server.com/	23	WWW: https://www.orthanc-server.com/




@mode
include/orthanc/OrthancCDatabasePlugin.h
include/orthanc/OrthancCPlugin.h
include/orthanc/OrthancCppDatabasePlugin.h
%%DATADIR%%/plugins/libServeFolders.so
%%DATADIR%%/plugins/libServeFolders.so.%%PORTVERSION%%
%%DATADIR%%/plugins/libModalityWorklists.so
%%DATADIR%%/plugins/libModalityWorklists.so.%%PORTVERSION%%
bin/OrthancRecoverCompressedFile
sbin/Orthanc
%%DATADIR%%/plugins/%%LUA_LIBDIR%%ModalityWorklists.so
%%DATADIR%%/plugins/%%LUA_LIBDIR%%ModalityWorklists.so.%%PORTVERSION%%
%%DATADIR%%/plugins/%%LUA_LIBDIR%%ServeFolders.so
%%DATADIR%%/plugins/%%LUA_LIBDIR%%ServeFolders.so.%%PORTVERSION%%

Return to bug 242546

Lines 1-92 Link Here

(-)science/orthanc/Makefile (-60 / +39 lines)
1	# Created by: mp39590@gmail.com	1	# Created by: maintainer.freebsd@xpoundit.com
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= orthanc	4	PORTNAME= orthanc
5	PORTVERSION= 1.3.0	5	PORTVERSION= 1.7.2
6	PORTREVISION= 4	6	CATEGORIES= science
7	CATEGORIES= science graphics net www
8	MASTER_SITES= http://orthanc-server.com/downloads/get.php?path=/orthanc/:main \	7	MASTER_SITES= http://orthanc-server.com/downloads/get.php?path=/orthanc/:main \
9	http://www.montefiore.ulg.ac.be/~jodogne/Orthanc/ThirdPartyDownloads/:mongoose	8	http://orthanc.osimis.io/ThirdPartyDownloads/:thirdparty
10	DISTFILES= Orthanc-${PORTVERSION}.tar.gz:main \	9	DISTFILES= Orthanc-${PORTVERSION}.tar.gz:main \
11	mongoose-3.8.tgz:mongoose	10	civetweb-1.12-fixed.tar.gz:thirdparty \
		11	e2fsprogs-1.44.5.tar.gz:thirdparty
12	DIST_SUBDIR= ${PORTNAME}	12	DIST_SUBDIR= ${PORTNAME}
		13	EXTRACT_ONLY= Orthanc-${PORTVERSION}.tar.gz
13		14
14	MAINTAINER= mp39590@gmail.com	15	MAINTAINER= maintainer.freebsd@xpoundit.com
15	COMMENT= RESTful DICOM server for healthcare and medical research	16	COMMENT= Orthanc is a DICOM server for healthcare and medical research
16		17
17	# GPLv3 license, with the OpenSSL exception.
18	LICENSE= GPLv3	18	LICENSE= GPLv3
19	LICENSE_FILE= ${WRKSRC}/COPYING	19	LICENSE_FILE= ${WRKSRC}/COPYING
20		20
21	BROKEN= fails to build with boost 1.66, see bug 224177	21	LIB_DEPENDS= libboost_atomic.so:devel/boost-libs \
22	BROKEN_powerpc64= fails to configure: CMake: Looking for C++ include pugixml.hpp - not found	22	libcharls.so:graphics/dcmtk \
23	DEPRECATED= Broken for more than 3 months	23	libcurl.so:ftp/curl \
24	EXPIRATION_DATE= 2018-06-06	24	libgtest.so:devel/googletest \
25		25	libicudata.so:devel/icu \
26	LIB_DEPENDS= libcurl.so:ftp/curl \	26	libjbig.so:graphics/jbigkit \
		27	libjpeg.so:graphics/jpeg-turbo \
27	libjsoncpp.so:devel/jsoncpp \	28	libjsoncpp.so:devel/jsoncpp \
		29	libnghttp2.so:www/libnghttp2 \
		30	libpng16.so:graphics/png \
		31	libpugixml.so:textproc/pugixml \
		32	libsqlite3.so:databases/sqlite3 \
		33	libtiff.so:graphics/tiff \
28	libuuid.so:misc/e2fsprogs-libuuid \	34	libuuid.so:misc/e2fsprogs-libuuid \
29	libboost_filesystem.so:devel/boost-libs \	35	libxml2.so:textproc/libxml2
30	libboost_thread.so:devel/boost-libs \
31	libboost_system.so:devel/boost-libs \
32	libboost_date_time.so:devel/boost-libs \
33	libboost_regex.so:devel/boost-libs \
34	libboost_locale.so:devel/boost-libs \
35	libdcmdsig.so:devel/dcmtk \
36	libcharls.so:devel/dcmtk \
37	libdcmjpls.so:devel/dcmtk \
38	libsqlite3.so:databases/sqlite3 \
39	libpng.so:graphics/png \
40	libgtest.so:devel/googletest \
41	libpugixml.so:textproc/pugixml
42		36
		37	USES= cmake dos2unix iconv jpeg lua python:build ssl
		38
		39	WRKSRC= ${WRKDIR}/Orthanc-${PORTVERSION}
		40	CMAKE_SOURCE_PATH= ${WRKSRC}/OrthancServer
43	CMAKE_ARGS= -DDCMTK_LIBRARIES="dcmdsig;charls;dcmjpls" \	41	CMAKE_ARGS= -DDCMTK_LIBRARIES="dcmdsig;charls;dcmjpls" \
44	-DDCMTK_DIR="${LOCALBASE}" \	42	-DDCMTK_DIR="${LOCALBASE}" \
45	-DDCMTK_DICTIONARY_DIR="${LOCALBASE}/share/dcmtk" \	43	-DDCMTK_DICTIONARY_DIR="${LOCALBASE}/share/dcmtk" \
46	-DUSE_SYSTEM_MONGOOSE=OFF \	44	-DUSE_SYSTEM_CIVETWEB=OFF \
47	-DUNIT_TESTS_WITH_HTTP_CONNEXIONS=OFF	45	-DUSE_SYSTEM_UUID=OFF \
48		46	-DUNIT_TESTS_WITH_HTTP_CONNEXIONS=OFF \
49	USES= cmake:outsource dos2unix jpeg lua:51 python:build ssl	47	-DBUILD_CONNECTIVITY_CHECKS=OFF
50	CFLAGS+= -I${LOCALBASE}/include	48	CFLAGS+= -I${LOCALBASE}/include \
		49	-DNDEBUG
		50	CXXFLAGS+= -DNDEBUG
51	DOS2UNIX_FILES= CMakeLists.txt	51	DOS2UNIX_FILES= CMakeLists.txt
52	USE_LDCONFIG= yes	52	USE_LDCONFIG= yes
53	USE_RC_SUBR= orthanc	53	USE_RC_SUBR= orthanc
54	WRKSRC= ${WRKDIR}/Orthanc-${PORTVERSION}
55	USERS= orthanc	54	USERS= orthanc
56	GROUPS= orthanc	55	GROUPS= orthanc
57	PLIST_SUB+= PORTVERSION=${PORTVERSION}	56	PLIST_SUB+= PORTVERSION=${PORTVERSION}
58		57
59	# This is mongoose sources, downloaded from Orthanc author homepage. Orthanc
60	# requires mongoose webserver, but after version 3.8, mongoose developers has
61	# changed the license from MIT to GPLv2 only. This action made illegal to
62	# combine new mongoose versions with GPLv3 only Orthanc.
63	# We download sources manually and pass USE_SYSTEM_MONGOOSE=OFF to Orthanc
64	# cmake variables to tell that mongoose is not presented on the host OS and
65	# should be build together with the software instead.
66	# https://www.mail-archive.com/mongoose-users@googlegroups.com/msg00625.html
67	post-patch:	58	post-patch:
68	${MKDIR} ${WRKSRC}/ThirdPartyDownloads	59	${MKDIR} ${CMAKE_SOURCE_PATH}/ThirdPartyDownloads
69	${CP} ${DISTDIR}/${DIST_SUBDIR}/mongoose-3.8.tgz ${WRKSRC}/ThirdPartyDownloads	60	${MKDIR} ${CMAKE_SOURCE_PATH}/Plugins/Samples/ConnectivityChecks/ThirdPartyDownloads
70	# Orthanc hardcodes /usr/local paths for libs and includes.	61	${CP} ${DISTDIR}/${DIST_SUBDIR}/civetweb-1.12-fixed.tar.gz ${CMAKE_SOURCE_PATH}/ThirdPartyDownloads
71	@${REINPLACE_CMD} -e 's\|/usr/local\|${LOCALBASE}\|g' ${WRKSRC}/Resources/CMake/*.cmake	62	${CP} ${DISTDIR}/${DIST_SUBDIR}/e2fsprogs-1.44.5.tar.gz ${CMAKE_SOURCE_PATH}/ThirdPartyDownloads
72		63
73	# There is no way to disable building of test units without a patch, on other
74	# hand it brings only one build dependency (devel/googletest) and running it was
75	# helpful in early bug detection in Debian.
76	# Some tests require connections to be made to the outside world, this is
77	# definitely unsupported behaviour and therefor those tests are disabled with
78	# cmake variable above (-DUNIT_TESTS_WITH_HTTP_CONNEXIONS=OFF).
79	#
80	# Tests run is temporary disabled: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=215393
81	#post-build:
82	# @cd ${BUILD_WRKSRC} && ./UnitTests
83
84	post-install:	64	post-install:
85	${MKDIR} ${STAGEDIR}/var/db/orthanc/db/db-v5	65	${MKDIR} ${STAGEDIR}/var/db/orthanc/db/db-v5
86	${MKDIR} ${STAGEDIR}${DATADIR}/plugins	66	${MKDIR} ${STAGEDIR}${DATADIR}/plugins
87	${MKDIR} ${STAGEDIR}${ETCDIR}	67	${MKDIR} ${STAGEDIR}${ETCDIR}
88	${REINPLACE_CMD} -e 's\|%%PREFIX%%\|${PREFIX}\|g' ${WRKSRC}/Resources/Configuration.json	68	${REINPLACE_CMD} -e 's\|%%PREFIX%%\|${PREFIX}\|g' ${CMAKE_SOURCE_PATH}/Resources/Configuration.json
89	${CP} ${WRKSRC}/Resources/Configuration.json ${STAGEDIR}${ETCDIR}/orthanc.json.sample	69	${CP} ${CMAKE_SOURCE_PATH}/Resources/Configuration.json ${STAGEDIR}${ETCDIR}/orthanc.json.sample
90	${STRIP_CMD} ${STAGEDIR}${DATADIR}/plugins/libServeFolders.so.${PORTVERSION}
91		70
92	.include <bsd.port.mk>	71	.include <bsd.port.mk>

Lines 10-19 Link Here

(-)science/orthanc/pkg-plist (-5 / +4 lines)
10	@mode	10	@mode
11	include/orthanc/OrthancCDatabasePlugin.h	11	include/orthanc/OrthancCDatabasePlugin.h
12	include/orthanc/OrthancCPlugin.h	12	include/orthanc/OrthancCPlugin.h
13	include/orthanc/OrthancCppDatabasePlugin.h
14	%%DATADIR%%/plugins/libServeFolders.so
15	%%DATADIR%%/plugins/libServeFolders.so.%%PORTVERSION%%
16	%%DATADIR%%/plugins/libModalityWorklists.so
17	%%DATADIR%%/plugins/libModalityWorklists.so.%%PORTVERSION%%
18	bin/OrthancRecoverCompressedFile	13	bin/OrthancRecoverCompressedFile
19	sbin/Orthanc	14	sbin/Orthanc
		15	%%DATADIR%%/plugins/%%LUA_LIBDIR%%ModalityWorklists.so
		16	%%DATADIR%%/plugins/%%LUA_LIBDIR%%ModalityWorklists.so.%%PORTVERSION%%
		17	%%DATADIR%%/plugins/%%LUA_LIBDIR%%ServeFolders.so
		18	%%DATADIR%%/plugins/%%LUA_LIBDIR%%ServeFolders.so.%%PORTVERSION%%