Attachment 217126 Details for Bug 242546 – Diff / the latest version of science/ortanc (orthanc-1.7.2_1, diff based on r544608)

[patch] Diff / the latest version of science/ortanc (orthanc-1.7.2_1, diff based on r544608)

orthanc.r544608.diff (text/plain), 12.49 KB, created by Frank Scholl on 2020-08-10 09:39:46 UTC

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Creator: Frank Scholl

Created: 2020-08-10 09:39:46 UTC

Size: 12.49 KB

patch

obsolete

>Index: MOVED
>===================================================================
>--- MOVED	(revision 544608)
>+++ MOVED	(working copy)
>@@ -10171,7 +10171,6 @@
> audio/gkrellmss2||2018-06-07|Has expired: Broken for more than 6 months
> audio/abcmidi||2018-06-07|Has expired: Broken for more than 6 months
> benchmarks/netpipe||2018-06-07|Has expired: Broken for more than 6 months
>-science/orthanc||2018-06-07|Has expired: Broken for more than 3 months
> science/orthanc-dicomweb||2018-06-07|Removed, depends on expired science/orthanc
> science/orthanc-postgresql||2018-06-07|Removed, depends on expired science/orthanc
> science/orthanc-webviewer||2018-06-07|Removed, depends on expired science/orthanc
>Index: science/Makefile
>===================================================================
>--- science/Makefile	(revision 544608)
>+++ science/Makefile	(working copy)
>@@ -178,6 +178,7 @@
>     SUBDIR += opensim-core
>     SUBDIR += opensph
>     SUBDIR += opsin
>+    SUBDIR += orthanc
>     SUBDIR += p5-Algorithm-SVMLight
>     SUBDIR += p5-Chemistry-3DBuilder
>     SUBDIR += p5-Chemistry-Bond-Find
>Index: science/orthanc/Makefile
>===================================================================
>--- science/orthanc/Makefile	(nonexistent)
>+++ science/orthanc/Makefile	(working copy)
>@@ -0,0 +1,71 @@
>+# Created by: maintainer.freebsd@xpoundit.com
>+# $FreeBSD$
>+
>+PORTNAME=	orthanc
>+PORTVERSION=	1.7.2
>+CATEGORIES=	science
>+MASTER_SITES=	http://orthanc-server.com/downloads/get.php?path=/orthanc/:main \
>+		http://orthanc.osimis.io/ThirdPartyDownloads/:thirdparty
>+DISTFILES=	Orthanc-${PORTVERSION}.tar.gz:main \
>+		civetweb-1.12-fixed.tar.gz:thirdparty \
>+		e2fsprogs-1.44.5.tar.gz:thirdparty
>+DIST_SUBDIR=	${PORTNAME}
>+EXTRACT_ONLY=	Orthanc-${PORTVERSION}.tar.gz
>+
>+MAINTAINER=	maintainer.freebsd@xpoundit.com
>+COMMENT=	Orthanc is a DICOM server for healthcare and medical research
>+
>+LICENSE=	GPLv3
>+LICENSE_FILE=	${WRKSRC}/COPYING
>+
>+LIB_DEPENDS=	libboost_atomic.so:devel/boost-libs \
>+		libcharls.so:graphics/dcmtk \
>+		libcurl.so:ftp/curl \
>+		libgtest.so:devel/googletest \
>+		libicudata.so:devel/icu \
>+		libjbig.so:graphics/jbigkit \
>+		libjpeg.so:graphics/jpeg-turbo \
>+		libjsoncpp.so:devel/jsoncpp \
>+		libnghttp2.so:www/libnghttp2 \
>+		libpng16.so:graphics/png \
>+		libpugixml.so:textproc/pugixml \
>+		libsqlite3.so:databases/sqlite3 \
>+		libtiff.so:graphics/tiff \
>+		libuuid.so:misc/e2fsprogs-libuuid \
>+		libxml2.so:textproc/libxml2
>+
>+USES=		cmake dos2unix iconv jpeg lua python:build ssl
>+
>+WRKSRC=		${WRKDIR}/Orthanc-${PORTVERSION}
>+CMAKE_SOURCE_PATH= ${WRKSRC}/OrthancServer
>+CMAKE_ARGS=	-DDCMTK_LIBRARIES="dcmdsig;charls;dcmjpls" \
>+		-DDCMTK_DIR="${LOCALBASE}" \
>+		-DDCMTK_DICTIONARY_DIR="${LOCALBASE}/share/dcmtk" \
>+		-DUSE_SYSTEM_CIVETWEB=OFF \
>+		-DUSE_SYSTEM_UUID=OFF \
>+		-DUNIT_TESTS_WITH_HTTP_CONNEXIONS=OFF \
>+		-DBUILD_CONNECTIVITY_CHECKS=OFF
>+CFLAGS+=	-I${LOCALBASE}/include \
>+		-DNDEBUG
>+CXXFLAGS+=	-DNDEBUG
>+DOS2UNIX_FILES=	CMakeLists.txt
>+USE_LDCONFIG=	yes
>+USE_RC_SUBR=	orthanc
>+USERS=		orthanc
>+GROUPS=		orthanc
>+PLIST_SUB+=	PORTVERSION=${PORTVERSION}
>+
>+post-patch:
>+	${MKDIR} ${CMAKE_SOURCE_PATH}/ThirdPartyDownloads
>+	${MKDIR} ${CMAKE_SOURCE_PATH}/Plugins/Samples/ConnectivityChecks/ThirdPartyDownloads
>+	${CP} ${DISTDIR}/${DIST_SUBDIR}/civetweb-1.12-fixed.tar.gz ${CMAKE_SOURCE_PATH}/ThirdPartyDownloads
>+	${CP} ${DISTDIR}/${DIST_SUBDIR}/e2fsprogs-1.44.5.tar.gz ${CMAKE_SOURCE_PATH}/ThirdPartyDownloads
>+
>+post-install:
>+	${MKDIR} ${STAGEDIR}/var/db/orthanc/db/db-v5
>+	${MKDIR} ${STAGEDIR}${DATADIR}/plugins
>+	${MKDIR} ${STAGEDIR}${ETCDIR}
>+	${REINPLACE_CMD} -e 's|%%PREFIX%%|${PREFIX}|g' ${CMAKE_SOURCE_PATH}/Resources/Configuration.json
>+	${CP} ${CMAKE_SOURCE_PATH}/Resources/Configuration.json ${STAGEDIR}${ETCDIR}/orthanc.json.sample
>+
>+.include <bsd.port.mk>
>
>Property changes on: science/orthanc/Makefile
>___________________________________________________________________
>Added: svn:eol-style
>## -0,0 +1 ##
>+native
>\ No newline at end of property
>Added: svn:keywords
>## -0,0 +1 ##
>+FreeBSD=%H
>\ No newline at end of property
>Added: svn:mime-type
>## -0,0 +1 ##
>+text/plain
>\ No newline at end of property
>Index: science/orthanc/distinfo
>===================================================================
>--- science/orthanc/distinfo	(nonexistent)
>+++ science/orthanc/distinfo	(working copy)
>@@ -0,0 +1,7 @@
>+TIMESTAMP = 1596543829
>+SHA256 (orthanc/Orthanc-1.7.2.tar.gz) = ea167b4688db7cd8855a1758f289b21d490e7d97afcc405f12d881b22bf17e9b
>+SIZE (orthanc/Orthanc-1.7.2.tar.gz) = 1644200
>+SHA256 (orthanc/civetweb-1.12-fixed.tar.gz) = 0e81fc252166302a33abd68e98936fb24d9b008b5816fe50edd6b12256768e41
>+SIZE (orthanc/civetweb-1.12-fixed.tar.gz) = 3035855
>+SHA256 (orthanc/e2fsprogs-1.44.5.tar.gz) = 2e211fae27ef74d5af4a4e40b10b8df7f87c655933bd171aab4889bfc4e6d1cc
>+SIZE (orthanc/e2fsprogs-1.44.5.tar.gz) = 7619237
>
>Property changes on: science/orthanc/distinfo
>___________________________________________________________________
>Added: fbsd:nokeywords
>## -0,0 +1 ##
>+yes
>\ No newline at end of property
>Added: svn:eol-style
>## -0,0 +1 ##
>+native
>\ No newline at end of property
>Added: svn:mime-type
>## -0,0 +1 ##
>+text/plain
>\ No newline at end of property
>Index: science/orthanc/files/orthanc.in
>===================================================================
>--- science/orthanc/files/orthanc.in	(nonexistent)
>+++ science/orthanc/files/orthanc.in	(working copy)
>@@ -0,0 +1,40 @@
>+#!/bin/sh
>+
>+# $FreeBSD$
>+#
>+# PROVIDE: orthanc
>+# REQUIRE: LOGIN
>+# KEYWORD: shutdown
>+#
>+# Add these lines to /etc/rc.conf.local or /etc/rc.conf
>+# to enable this service:
>+#
>+# orthanc_enable (bool):	Set to NO by default.
>+#				Set it to YES to enable Orthanc.
>+# orthanc_flags (str):		Set to %%ETCDIR%%/orthanc.json
>+#				by default.
>+
>+. /etc/rc.subr
>+
>+name=orthanc
>+rcvar=orthanc_enable
>+desc="RESTful DICOM server for healthcare and medical research"
>+
>+load_rc_config $name
>+
>+: ${orthanc_enable:=NO}
>+: ${orthanc_flags="%%ETCDIR%%/orthanc.json"}
>+
>+start_precmd=orthanc_prestart
>+pidfile=/var/run/orthanc.pid
>+procname=%%PREFIX%%/sbin/Orthanc
>+command=/usr/sbin/daemon
>+command_args=" -f -p ${pidfile} -u orthanc ${procname} ${orthanc_flags}"
>+
>+orthanc_prestart()
>+{
>+	# Have to empty rc_flags so they don't get passed to daemon(8)
>+	rc_flags=""
>+}
>+
>+run_rc_command "$1"
>
>Property changes on: science/orthanc/files/orthanc.in
>___________________________________________________________________
>Added: svn:eol-style
>## -0,0 +1 ##
>+native
>\ No newline at end of property
>Added: svn:mime-type
>## -0,0 +1 ##
>+text/plain
>\ No newline at end of property
>Index: science/orthanc/files/patch-CMakeLists.txt
>===================================================================
>--- science/orthanc/files/patch-CMakeLists.txt	(nonexistent)
>+++ science/orthanc/files/patch-CMakeLists.txt	(working copy)
>@@ -0,0 +1,13 @@
>+--- CMakeLists.txt.orig	2020-04-01 15:55:47 UTC
>++++ CMakeLists.txt
>+@@ -519,8 +519,8 @@ if (ENABLE_PLUGINS AND BUILD_CONNECTIVITY_CHECKS)
>+     list(GET CMAKE_FIND_LIBRARY_PREFIXES 0 Prefix)
>+     list(GET CMAKE_FIND_LIBRARY_SUFFIXES 0 Suffix)
>+     install(FILES
>+-      ${CMAKE_CURRENT_BINARY_DIR}/${Prefix}ConnectivityChecks${Suffix}
>+-      ${CMAKE_CURRENT_BINARY_DIR}/${Prefix}ConnectivityChecks${Suffix}.${ORTHANC_VERSION}
>++      ${CMAKE_CURRENT_BINARY_DIR}/ConnectivityChecks-build/${Prefix}ConnectivityChecks${Suffix}
>++      ${CMAKE_CURRENT_BINARY_DIR}/ConnectivityChecks-build/${Prefix}ConnectivityChecks${Suffix}.${ORTHANC_VERSION}
>+       DESTINATION "share/orthanc/plugins")
>+   endif()
>+ endif()
>
>Property changes on: science/orthanc/files/patch-CMakeLists.txt
>___________________________________________________________________
>Added: fbsd:nokeywords
>## -0,0 +1 ##
>+yes
>\ No newline at end of property
>Added: svn:eol-style
>## -0,0 +1 ##
>+native
>\ No newline at end of property
>Added: svn:mime-type
>## -0,0 +1 ##
>+text/plain
>\ No newline at end of property
>Index: science/orthanc/files/patch-OrthancServer_Resources_Configuration.json
>===================================================================
>--- science/orthanc/files/patch-OrthancServer_Resources_Configuration.json	(nonexistent)
>+++ science/orthanc/files/patch-OrthancServer_Resources_Configuration.json	(working copy)
>@@ -0,0 +1,25 @@
>+--- OrthancServer/Resources/Configuration.json.orig	2020-07-08 09:50:26 UTC
>++++ OrthancServer/Resources/Configuration.json
>+@@ -10,12 +10,12 @@
>+   // Path to the directory that holds the heavyweight files (i.e. the
>+   // raw DICOM instances). Backslashes must be either escaped by
>+   // doubling them, or replaced by forward slashes "/".
>+-  "StorageDirectory" : "OrthancStorage",
>++  "StorageDirectory" : "/var/db/orthanc/db-v5",
>+ 
>+   // Path to the directory that holds the SQLite index (if unset, the
>+   // value of StorageDirectory is used). This index could be stored on
>+   // a RAM-drive or a SSD device for performance reasons.
>+-  "IndexDirectory" : "OrthancStorage",
>++  "IndexDirectory" : "/var/db/orthanc/db-v5",
>+ 
>+   // Path to the directory where Orthanc stores its large temporary
>+   // files. The content of this folder can be safely deleted if
>+@@ -53,6 +53,7 @@
>+   // find shared libraries. Backslashes must be either escaped by
>+   // doubling them, or replaced by forward slashes "/".
>+   "Plugins" : [
>++    "%%PREFIX%%/share/orthanc/plugins/"
>+   ],
>+ 
>+   // Maximum number of processing jobs that are simultaneously running
>
>Property changes on: science/orthanc/files/patch-OrthancServer_Resources_Configuration.json
>___________________________________________________________________
>Added: fbsd:nokeywords
>## -0,0 +1 ##
>+yes
>\ No newline at end of property
>Added: svn:eol-style
>## -0,0 +1 ##
>+native
>\ No newline at end of property
>Added: svn:mime-type
>## -0,0 +1 ##
>+text/plain
>\ No newline at end of property
>Index: science/orthanc/pkg-descr
>===================================================================
>--- science/orthanc/pkg-descr	(nonexistent)
>+++ science/orthanc/pkg-descr	(working copy)
>@@ -0,0 +1,23 @@
>+Orthanc aims at providing a simple, yet powerful standalone DICOM server. It
>+is designed to improve the DICOM flows in hospitals and to support research
>+about the automated analysis of medical images. Orthanc lets its users focus
>+on the content of the DICOM files, hiding the complexity of the DICOM format
>+and of the DICOM protocol.
>+
>+Orthanc can turn any computer running Windows, Linux, FreeBSD or OS X into a
>+DICOM store (in other words, a mini-PACS system). Its architecture is
>+lightweight and standalone, meaning that no complex database administration
>+is required, nor the installation of third-party dependencies.
>+
>+What makes Orthanc unique is the fact that it provides a RESTful API. Thanks
>+to this major feature, it is possible to drive Orthanc from any computer
>+language. The DICOM tags of the stored medical images can be downloaded in
>+the JSON file format. Furthermore, standard PNG images can be generated
>+on-the-fly from the DICOM instances by Orthanc.
>+
>+Orthanc also features a plugin mechanism to add new modules that extends the
>+core capabilities of its REST API. A Web viewer, a PostgreSQL database
>+back-end, a MySQL database back-end, and a reference implementation of
>+DICOMweb are currently freely available as plugins.
>+
>+WWW: https://www.orthanc-server.com/
>
>Property changes on: science/orthanc/pkg-descr
>___________________________________________________________________
>Added: fbsd:nokeywords
>## -0,0 +1 ##
>+yes
>\ No newline at end of property
>Added: svn:eol-style
>## -0,0 +1 ##
>+native
>\ No newline at end of property
>Added: svn:mime-type
>## -0,0 +1 ##
>+text/plain
>\ No newline at end of property
>Index: science/orthanc/pkg-plist
>===================================================================
>--- science/orthanc/pkg-plist	(nonexistent)
>+++ science/orthanc/pkg-plist	(working copy)
>@@ -0,0 +1,18 @@
>+@owner orthanc
>+@group orthanc
>+@mode 700
>+@dir %%DATADIR%%/plugins
>+@dir /var/db/orthanc/db/db-v5
>+@dir /var/db/orthanc/db
>+@dir /var/db/orthanc
>+@mode 600
>+@sample %%ETCDIR%%/orthanc.json.sample
>+@mode
>+include/orthanc/OrthancCDatabasePlugin.h
>+include/orthanc/OrthancCPlugin.h
>+bin/OrthancRecoverCompressedFile
>+sbin/Orthanc
>+%%DATADIR%%/plugins/%%LUA_LIBDIR%%ModalityWorklists.so
>+%%DATADIR%%/plugins/%%LUA_LIBDIR%%ModalityWorklists.so.%%PORTVERSION%%
>+%%DATADIR%%/plugins/%%LUA_LIBDIR%%ServeFolders.so
>+%%DATADIR%%/plugins/%%LUA_LIBDIR%%ServeFolders.so.%%PORTVERSION%%
>
>Property changes on: science/orthanc/pkg-plist
>___________________________________________________________________
>Added: fbsd:nokeywords
>## -0,0 +1 ##
>+yes
>\ No newline at end of property
>Added: svn:eol-style
>## -0,0 +1 ##
>+native
>\ No newline at end of property
>Added: svn:mime-type
>## -0,0 +1 ##
>+text/plain
>\ No newline at end of property

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Attachments on bug 242546: 209831 | 214830 | 215799 | 215907 | 217005 | 217069 | 217125 | 217126 | 217732 | 225062 | 225335 | 225590 | 225634