--- science/orthanc/Makefile	(nonexistent)
+++ science/orthanc/Makefile	(working copy)
@@ -0,0 +1,71 @@ 
+# Created by: maintainer.freebsd@xpoundit.com
+# $FreeBSD$
+
+PORTNAME=	orthanc
+PORTVERSION=	1.7.2
+CATEGORIES=	science
+MASTER_SITES=	http://orthanc-server.com/downloads/get.php?path=/orthanc/:main \
+		http://orthanc.osimis.io/ThirdPartyDownloads/:thirdparty
+DISTFILES=	Orthanc-${PORTVERSION}.tar.gz:main \
+		civetweb-1.12-fixed.tar.gz:thirdparty \
+		e2fsprogs-1.44.5.tar.gz:thirdparty
+DIST_SUBDIR=	${PORTNAME}
+EXTRACT_ONLY=	Orthanc-${PORTVERSION}.tar.gz
+
+MAINTAINER=	maintainer.freebsd@xpoundit.com
+COMMENT=	Orthanc is a DICOM server for healthcare and medical research
+
+LICENSE=	GPLv3
+LICENSE_FILE=	${WRKSRC}/COPYING
+
+LIB_DEPENDS=	libboost_atomic.so:devel/boost-libs \
+		libcharls.so:graphics/dcmtk \
+		libcurl.so:ftp/curl \
+		libgtest.so:devel/googletest \
+		libicudata.so:devel/icu \
+		libjbig.so:graphics/jbigkit \
+		libjpeg.so:graphics/jpeg-turbo \
+		libjsoncpp.so:devel/jsoncpp \
+		libnghttp2.so:www/libnghttp2 \
+		libpng16.so:graphics/png \
+		libpugixml.so:textproc/pugixml \
+		libsqlite3.so:databases/sqlite3 \
+		libtiff.so:graphics/tiff \
+		libuuid.so:misc/e2fsprogs-libuuid \
+		libxml2.so:textproc/libxml2
+
+USES=		cmake dos2unix iconv jpeg lua python:build ssl
+
+WRKSRC=		${WRKDIR}/Orthanc-${PORTVERSION}
+CMAKE_SOURCE_PATH= ${WRKSRC}/OrthancServer
+CMAKE_ARGS=	-DDCMTK_LIBRARIES="dcmdsig;charls;dcmjpls" \
+		-DDCMTK_DIR="${LOCALBASE}" \
+		-DDCMTK_DICTIONARY_DIR="${LOCALBASE}/share/dcmtk" \
+		-DUSE_SYSTEM_CIVETWEB=OFF \
+		-DUSE_SYSTEM_UUID=OFF \
+		-DUNIT_TESTS_WITH_HTTP_CONNEXIONS=OFF \
+		-DBUILD_CONNECTIVITY_CHECKS=OFF
+CFLAGS+=	-I${LOCALBASE}/include \
+		-DNDEBUG
+CXXFLAGS+=	-DNDEBUG
+DOS2UNIX_FILES=	${WRKSRC}/OrthancServer/CMakeLists.txt
+USE_LDCONFIG=	yes
+USE_RC_SUBR=	orthanc
+USERS=		orthanc
+GROUPS=		orthanc
+PLIST_SUB+=	PORTVERSION=${PORTVERSION}
+
+post-patch:
+	${MKDIR} ${CMAKE_SOURCE_PATH}/ThirdPartyDownloads
+	${MKDIR} ${CMAKE_SOURCE_PATH}/Plugins/Samples/ConnectivityChecks/ThirdPartyDownloads
+	${CP} ${DISTDIR}/${DIST_SUBDIR}/civetweb-1.12-fixed.tar.gz ${CMAKE_SOURCE_PATH}/ThirdPartyDownloads
+	${CP} ${DISTDIR}/${DIST_SUBDIR}/e2fsprogs-1.44.5.tar.gz ${CMAKE_SOURCE_PATH}/ThirdPartyDownloads
+
+post-install:
+	${MKDIR} ${STAGEDIR}/var/db/orthanc/db/db-v5
+	${MKDIR} ${STAGEDIR}${DATADIR}/plugins
+	${MKDIR} ${STAGEDIR}${ETCDIR}
+	${REINPLACE_CMD} -e 's|%%PREFIX%%|${PREFIX}|g' ${CMAKE_SOURCE_PATH}/Resources/Configuration.json
+	${CP} ${CMAKE_SOURCE_PATH}/Resources/Configuration.json ${STAGEDIR}${ETCDIR}/orthanc.json.sample
+
+.include <bsd.port.mk>
--- science/orthanc/distinfo	(nonexistent)
+++ science/orthanc/distinfo	(working copy)
@@ -0,0 +1,7 @@ 
+TIMESTAMP = 1596543829
+SHA256 (orthanc/Orthanc-1.7.2.tar.gz) = ea167b4688db7cd8855a1758f289b21d490e7d97afcc405f12d881b22bf17e9b
+SIZE (orthanc/Orthanc-1.7.2.tar.gz) = 1644200
+SHA256 (orthanc/civetweb-1.12-fixed.tar.gz) = 0e81fc252166302a33abd68e98936fb24d9b008b5816fe50edd6b12256768e41
+SIZE (orthanc/civetweb-1.12-fixed.tar.gz) = 3035855
+SHA256 (orthanc/e2fsprogs-1.44.5.tar.gz) = 2e211fae27ef74d5af4a4e40b10b8df7f87c655933bd171aab4889bfc4e6d1cc
+SIZE (orthanc/e2fsprogs-1.44.5.tar.gz) = 7619237
--- science/orthanc/files/orthanc.in	(nonexistent)
+++ science/orthanc/files/orthanc.in	(working copy)
@@ -0,0 +1,40 @@ 
+#!/bin/sh
+
+# $FreeBSD$
+#
+# PROVIDE: orthanc
+# REQUIRE: LOGIN
+# KEYWORD: shutdown
+#
+# Add these lines to /etc/rc.conf.local or /etc/rc.conf
+# to enable this service:
+#
+# orthanc_enable (bool):	Set to NO by default.
+#				Set it to YES to enable Orthanc.
+# orthanc_flags (str):		Set to %%ETCDIR%%/orthanc.json
+#				by default.
+
+. /etc/rc.subr
+
+name=orthanc
+rcvar=orthanc_enable
+desc="RESTful DICOM server for healthcare and medical research"
+
+load_rc_config $name
+
+: ${orthanc_enable:=NO}
+: ${orthanc_flags="%%ETCDIR%%/orthanc.json"}
+
+start_precmd=orthanc_prestart
+pidfile=/var/run/orthanc.pid
+procname=%%PREFIX%%/sbin/Orthanc
+command=/usr/sbin/daemon
+command_args=" -f -p ${pidfile} -u orthanc ${procname} ${orthanc_flags}"
+
+orthanc_prestart()
+{
+	# Have to empty rc_flags so they don't get passed to daemon(8)
+	rc_flags=""
+}
+
+run_rc_command "$1"
--- science/orthanc/files/patch-OrthancServer_CMakeLists.txt	(nonexistent)
+++ science/orthanc/files/patch-OrthancServer_CMakeLists.txt	(working copy)
@@ -0,0 +1,13 @@ 
+--- OrthancServer/CMakeLists.txt.orig	2020-07-08 09:50:26 UTC
++++ OrthancServer/CMakeLists.txt
+@@ -574,8 +574,8 @@ if (ENABLE_PLUGINS AND BUILD_CONNECTIVITY_CHECKS)
+     list(GET CMAKE_FIND_LIBRARY_PREFIXES 0 Prefix)
+     list(GET CMAKE_FIND_LIBRARY_SUFFIXES 0 Suffix)
+     install(FILES
+-      ${CMAKE_CURRENT_BINARY_DIR}/${Prefix}ConnectivityChecks${Suffix}
+-      ${CMAKE_CURRENT_BINARY_DIR}/${Prefix}ConnectivityChecks${Suffix}.${ORTHANC_VERSION}
++      ${CMAKE_CURRENT_BINARY_DIR}/ConnectivityChecks-build/${Prefix}ConnectivityChecks${Suffix}
++      ${CMAKE_CURRENT_BINARY_DIR}/ConnectivityChecks-build/${Prefix}ConnectivityChecks${Suffix}.${ORTHANC_VERSION}
+       DESTINATION "share/orthanc/plugins")
+   endif()
+ endif()
--- science/orthanc/files/patch-OrthancServer_Resources_Configuration.json	(nonexistent)
+++ science/orthanc/files/patch-OrthancServer_Resources_Configuration.json	(working copy)
@@ -0,0 +1,25 @@ 
+--- OrthancServer/Resources/Configuration.json.orig	2020-07-08 09:50:26 UTC
++++ OrthancServer/Resources/Configuration.json
+@@ -10,12 +10,12 @@
+   // Path to the directory that holds the heavyweight files (i.e. the
+   // raw DICOM instances). Backslashes must be either escaped by
+   // doubling them, or replaced by forward slashes "/".
+-  "StorageDirectory" : "OrthancStorage",
++  "StorageDirectory" : "/var/db/orthanc/db-v5",
+ 
+   // Path to the directory that holds the SQLite index (if unset, the
+   // value of StorageDirectory is used). This index could be stored on
+   // a RAM-drive or a SSD device for performance reasons.
+-  "IndexDirectory" : "OrthancStorage",
++  "IndexDirectory" : "/var/db/orthanc/db-v5",
+ 
+   // Path to the directory where Orthanc stores its large temporary
+   // files. The content of this folder can be safely deleted if
+@@ -53,6 +53,7 @@
+   // find shared libraries. Backslashes must be either escaped by
+   // doubling them, or replaced by forward slashes "/".
+   "Plugins" : [
++    "%%PREFIX%%/share/orthanc/plugins/"
+   ],
+ 
+   // Maximum number of processing jobs that are simultaneously running
--- science/orthanc/pkg-descr	(nonexistent)
+++ science/orthanc/pkg-descr	(working copy)
@@ -0,0 +1,23 @@ 
+Orthanc aims at providing a simple, yet powerful standalone DICOM server. It
+is designed to improve the DICOM flows in hospitals and to support research
+about the automated analysis of medical images. Orthanc lets its users focus
+on the content of the DICOM files, hiding the complexity of the DICOM format
+and of the DICOM protocol.
+
+Orthanc can turn any computer running Windows, Linux, FreeBSD or OS X into a
+DICOM store (in other words, a mini-PACS system). Its architecture is
+lightweight and standalone, meaning that no complex database administration
+is required, nor the installation of third-party dependencies.
+
+What makes Orthanc unique is the fact that it provides a RESTful API. Thanks
+to this major feature, it is possible to drive Orthanc from any computer
+language. The DICOM tags of the stored medical images can be downloaded in
+the JSON file format. Furthermore, standard PNG images can be generated
+on-the-fly from the DICOM instances by Orthanc.
+
+Orthanc also features a plugin mechanism to add new modules that extends the
+core capabilities of its REST API. A Web viewer, a PostgreSQL database
+back-end, a MySQL database back-end, and a reference implementation of
+DICOMweb are currently freely available as plugins.
+
+WWW: https://www.orthanc-server.com/
--- science/orthanc/pkg-plist	(nonexistent)
+++ science/orthanc/pkg-plist	(working copy)
@@ -0,0 +1,18 @@ 
+@owner orthanc
+@group orthanc
+@mode 700
+@dir %%DATADIR%%/plugins
+@dir /var/db/orthanc/db/db-v5
+@dir /var/db/orthanc/db
+@dir /var/db/orthanc
+@mode 600
+@sample %%ETCDIR%%/orthanc.json.sample
+@mode
+include/orthanc/OrthancCDatabasePlugin.h
+include/orthanc/OrthancCPlugin.h
+bin/OrthancRecoverCompressedFile
+sbin/Orthanc
+%%DATADIR%%/plugins/%%LUA_LIBDIR%%ModalityWorklists.so
+%%DATADIR%%/plugins/%%LUA_LIBDIR%%ModalityWorklists.so.%%PORTVERSION%%
+%%DATADIR%%/plugins/%%LUA_LIBDIR%%ServeFolders.so
+%%DATADIR%%/plugins/%%LUA_LIBDIR%%ServeFolders.so.%%PORTVERSION%%