Attachment 219586 Details for Bug 251065 – new port

[patch] new port

pooler.diff (text/plain), 3.62 KB, created by Silas S. Brown on 2020-11-12 08:38:05 UTC

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Creator: Silas S. Brown

Created: 2020-11-12 08:38:05 UTC

Size: 3.62 KB

patch

obsolete

>Index: biology/pooler/Makefile
>===================================================================
>--- biology/pooler/Makefile	(nonexistent)
>+++ biology/pooler/Makefile	(working copy)
>@@ -0,0 +1,16 @@
>+# $FreeBSD$
>+
>+PORTNAME=pooler
>+CATEGORIES=biology
>+USE_GITHUB=yes
>+GH_ACCOUNT=ssb22
>+GH_PROJECT=PrimerPooler
>+DISTVERSION=1.73
>+GH_TAGNAME=v1.73
>+MAKE_FLAGS=-C pooler -f
>+USES=gmake
>+MAINTAINER=ssb22@cam.ac.uk
>+COMMENT=PrimerPooler: optimise primer-set combinations
>+LICENSE=APACHE20
>+
>+.include <bsd.port.mk>
>
>Property changes on: biology/pooler/Makefile
>___________________________________________________________________
>Added: svn:eol-style
>## -0,0 +1 ##
>+native
>\ No newline at end of property
>Added: svn:keywords
>## -0,0 +1 ##
>+FreeBSD=%H
>\ No newline at end of property
>Added: svn:mime-type
>## -0,0 +1 ##
>+text/plain
>\ No newline at end of property
>Index: biology/pooler/distinfo
>===================================================================
>--- biology/pooler/distinfo	(nonexistent)
>+++ biology/pooler/distinfo	(working copy)
>@@ -0,0 +1,3 @@
>+TIMESTAMP = 1605112657
>+SHA256 (ssb22-PrimerPooler-1.73-v1.73_GH0.tar.gz) = 84bd453cc771240294c921b5674911aa94b36b34b7ce5eb37c0829b6d197814c
>+SIZE (ssb22-PrimerPooler-1.73-v1.73_GH0.tar.gz) = 125731
>
>Property changes on: biology/pooler/distinfo
>___________________________________________________________________
>Added: fbsd:nokeywords
>## -0,0 +1 ##
>+yes
>\ No newline at end of property
>Added: svn:eol-style
>## -0,0 +1 ##
>+native
>\ No newline at end of property
>Added: svn:mime-type
>## -0,0 +1 ##
>+text/plain
>\ No newline at end of property
>Index: biology/pooler/pkg-descr
>===================================================================
>--- biology/pooler/pkg-descr	(nonexistent)
>+++ biology/pooler/pkg-descr	(working copy)
>@@ -0,0 +1,27 @@
>+This is a program I wrote for cancer researchers and others who want to use
>+Multiplex PCR to study DNA samples, and wish to optimise their combinations of
>+primers to minimise the formation of dimers.
>+
>+Primer Pooler can:
>+
>+* Check through each proposed pool for combinations that are likely to form
>+  dimers,
>+
>+* Automatically move prospective amplicons between proposed pools to reduce
>+  dimer formation,
>+
>+* Automatically search the genome sequence to find which amplicons overlap, and
>+  place their corresponding primers in separate pools,
>+
>+* Optionally keep pool sizes within a specified range,
>+
>+* Handle thousands of primers without being slow (useful for high-throughput
>+  sequencing applications),
>+
>+* Do all of the above with degenerate primers too.
>+
>+If your CPU is modern enough to have them, Primer Pooler will take advantage of
>+64-bit registers and multiple cores. But it also runs on older equipment.
>+
>+WWW: http://ssb22.user.srcf.net/pooler/
>+
>
>Property changes on: biology/pooler/pkg-descr
>___________________________________________________________________
>Added: fbsd:nokeywords
>## -0,0 +1 ##
>+yes
>\ No newline at end of property
>Added: svn:eol-style
>## -0,0 +1 ##
>+native
>\ No newline at end of property
>Added: svn:mime-type
>## -0,0 +1 ##
>+text/plain
>\ No newline at end of property
>Index: biology/pooler/pkg-plist
>===================================================================
>--- biology/pooler/pkg-plist	(nonexistent)
>+++ biology/pooler/pkg-plist	(working copy)
>@@ -0,0 +1,2 @@
>+bin/pooler
>+man/man1/pooler.1.gz
>
>Property changes on: biology/pooler/pkg-plist
>___________________________________________________________________
>Added: fbsd:nokeywords
>## -0,0 +1 ##
>+yes
>\ No newline at end of property
>Added: svn:eol-style
>## -0,0 +1 ##
>+native
>\ No newline at end of property
>Added: svn:mime-type
>## -0,0 +1 ##
>+text/plain
>\ No newline at end of property

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Attachments on bug 251065: 219586 | 219616