Index: biology/pooler/Makefile =================================================================== --- biology/pooler/Makefile (nonexistent) +++ biology/pooler/Makefile (working copy) @@ -0,0 +1,22 @@ +# $FreeBSD$ + +PORTNAME=pooler +DISTVERSION=1.73 +CATEGORIES=biology + +MAINTAINER=ssb22@cam.ac.uk +COMMENT=PrimerPooler: optimise primer-set combinations + +LICENSE=APACHE20 + +MAKE_FLAGS=-C pooler -f +USES=gmake + +USE_GITHUB=yes +GH_ACCOUNT=ssb22 +GH_PROJECT=PrimerPooler +GH_TAGNAME=v1.73 + +PLIST_FILES=bin/pooler man/man1/pooler.1.gz + +.include Property changes on: biology/pooler/Makefile ___________________________________________________________________ Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:keywords ## -0,0 +1 ## +FreeBSD=%H \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: biology/pooler/distinfo =================================================================== --- biology/pooler/distinfo (nonexistent) +++ biology/pooler/distinfo (working copy) @@ -0,0 +1,3 @@ +TIMESTAMP = 1605112657 +SHA256 (ssb22-PrimerPooler-1.73-v1.73_GH0.tar.gz) = 84bd453cc771240294c921b5674911aa94b36b34b7ce5eb37c0829b6d197814c +SIZE (ssb22-PrimerPooler-1.73-v1.73_GH0.tar.gz) = 125731 Property changes on: biology/pooler/distinfo ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property Index: biology/pooler/pkg-descr =================================================================== --- biology/pooler/pkg-descr (nonexistent) +++ biology/pooler/pkg-descr (working copy) @@ -0,0 +1,27 @@ +This is a program I wrote for cancer researchers and others who want to use +Multiplex PCR to study DNA samples, and wish to optimise their combinations of +primers to minimise the formation of dimers. + +Primer Pooler can: + +* Check through each proposed pool for combinations that are likely to form + dimers, + +* Automatically move prospective amplicons between proposed pools to reduce + dimer formation, + +* Automatically search the genome sequence to find which amplicons overlap, and + place their corresponding primers in separate pools, + +* Optionally keep pool sizes within a specified range, + +* Handle thousands of primers without being slow (useful for high-throughput + sequencing applications), + +* Do all of the above with degenerate primers too. + +If your CPU is modern enough to have them, Primer Pooler will take advantage of +64-bit registers and multiple cores. But it also runs on older equipment. + +WWW: http://ssb22.user.srcf.net/pooler/ + Property changes on: biology/pooler/pkg-descr ___________________________________________________________________ Added: fbsd:nokeywords ## -0,0 +1 ## +yes \ No newline at end of property Added: svn:eol-style ## -0,0 +1 ## +native \ No newline at end of property Added: svn:mime-type ## -0,0 +1 ## +text/plain \ No newline at end of property