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(-)/usr/ports/wip/igv/Makefile (-20 / +9 lines)
Lines 2-8 Link Here
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PORTNAME=	igv
3
PORTNAME=	igv
4
DISTVERSIONPREFIX=	v
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DISTVERSIONPREFIX=	v
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DISTVERSION=	2.5.3
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DISTVERSION=	2.8.12
6
CATEGORIES=	biology java
6
CATEGORIES=	biology java
7
MASTER_SITES=	http://software.broadinstitute.org/software/igv/sites/cancerinformatics.org.igv/files/images/:img
7
MASTER_SITES=	http://software.broadinstitute.org/software/igv/sites/cancerinformatics.org.igv/files/images/:img
8
DISTFILES=	tools.png:img
8
DISTFILES=	tools.png:img
Lines 15-56 Link Here
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LICENSE=	MIT
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LICENSE=	MIT
16
LICENSE_FILE=	${WRKSRC}/license.txt
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LICENSE_FILE=	${WRKSRC}/license.txt
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DEPRECATED=	depends on expiring java/openjfx8-devel
18
BUILD_DEPENDS=	gradle>=6:devel/gradle
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EXPIRATION_DATE=	2020-11-30
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BUILD_DEPENDS=	openjfx8-devel>0:java/openjfx8-devel \
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		gradle4:devel/gradle4
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RUN_DEPENDS=	openjfx8-devel>0:java/openjfx8-devel
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USES=		gettext-runtime
20
USES=		gettext-runtime
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USE_GITHUB=	yes
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USE_GITHUB=	yes
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GH_ACCOUNT=	igvteam
22
GH_ACCOUNT=	igvteam
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USE_JAVA=	yes
23
USE_JAVA=	11
29
NO_ARCH=	yes
24
NO_ARCH=	yes
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25
31
MAKE_ENV+=	GRADLE_USER_HOME=${WRKDIR}
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MAKE_ENV+=	GRADLE_USER_HOME=${WRKDIR}
32
27
33
SUB_FILES=	${PORTNAME}.sh
28
SUB_FILES=	${PORTNAME}.sh
29
SUB_LIST=	JAVA_HOME=${JAVA_HOME} \
30
		JAVAJARDIR=${JAVAJARDIR}
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31
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DESKTOP_ENTRIES="IGV" "Integrative Genomics Viewer" "${PREFIX}/share/pixmaps/igv.xpm" "${PORTNAME}" \
32
DESKTOP_ENTRIES="IGV" "Integrative Genomics Viewer" "${PREFIX}/share/pixmaps/igv.xpm" "${PORTNAME}" \
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		"Biology;Science;" true
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		"Biology;Science;" true
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34
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PLIST_FILES=	bin/${PORTNAME} \
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		${JAVAJARDIR}/batik-codec-1.10.jar \
40
		${JAVAJARDIR}/goby-io-igv-1.1.jar \
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		${JAVAJARDIR}/log4j-core-2.11.0.jar \
42
		${JAVAJARDIR}/${PORTNAME}.jar \
43
		share/pixmaps/igv.png
44
45
do-build:
35
do-build:
46
	@cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle4 createDist
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	@cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} JAVA_VERSION=${JAVA_VERSION} gradle --no-daemon createDist
47
37
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do-install:
38
do-install:
39
	@${MKDIR} ${STAGEDIR}${JAVAJARDIR}/igv
49
	${INSTALL_SCRIPT} ${WRKDIR}/${PORTNAME}.sh ${STAGEDIR}${PREFIX}/bin/${PORTNAME}
40
	${INSTALL_SCRIPT} ${WRKDIR}/${PORTNAME}.sh ${STAGEDIR}${PREFIX}/bin/${PORTNAME}
50
	${INSTALL_DATA} ${WRKSRC}/build/IGV-dist/lib/${PORTNAME}.jar ${STAGEDIR}${JAVAJARDIR}
41
	cd ${WRKSRC}/build/IGV-dist/lib && ${COPYTREE_SHARE} . ${STAGEDIR}${JAVAJARDIR}/igv
51
	${INSTALL_DATA} ${WRKSRC}/build/IGV-dist/lib/batik-codec-1.10.jar ${STAGEDIR}${JAVAJARDIR}
42
	${INSTALL_DATA} ${WRKSRC}/build/IGV-dist/igv.args ${STAGEDIR}${JAVAJARDIR}/igv
52
	${INSTALL_DATA} ${WRKSRC}/build/IGV-dist/lib/goby-io-igv-1.1.jar ${STAGEDIR}${JAVAJARDIR}
53
	${INSTALL_DATA} ${WRKSRC}/build/IGV-dist/lib/log4j-core-2.11.0.jar ${STAGEDIR}${JAVAJARDIR}
54
	${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/tools.png ${STAGEDIR}${PREFIX}/share/pixmaps/${PORTNAME}.png
43
	${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/tools.png ${STAGEDIR}${PREFIX}/share/pixmaps/${PORTNAME}.png
55
44
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.include <bsd.port.mk>
45
.include <bsd.port.mk>
(-)/usr/ports/wip/igv/distinfo (-5 / +5 lines)
Lines 1-5 Link Here
1
TIMESTAMP = 1559404148
1
TIMESTAMP = 1606224589
2
SHA256 (igv-2.5.3/tools.png) = 7a619d7770da008d1bc23a60a07f416625ba3a404a3656b8d1bda0de97415d1c
2
SHA256 (igv-2.8.12/tools.png) = 7a619d7770da008d1bc23a60a07f416625ba3a404a3656b8d1bda0de97415d1c
3
SIZE (igv-2.5.3/tools.png) = 5139
3
SIZE (igv-2.8.12/tools.png) = 5139
4
SHA256 (igv-2.5.3/igvteam-igv-v2.5.3_GH0.tar.gz) = fe7d19163e3abf798c8ea0606f0bc288aee40f86553c0b533b08b90d8b0b6c38
4
SHA256 (igv-2.8.12/igvteam-igv-v2.8.12_GH0.tar.gz) = e4bce21034fe011da3dad7beed0cfe3ad554e7c38e6187135747cfc487083248
5
SIZE (igv-2.5.3/igvteam-igv-v2.5.3_GH0.tar.gz) = 140855739
5
SIZE (igv-2.8.12/igvteam-igv-v2.8.12_GH0.tar.gz) = 122358621
(-)/usr/ports/wip/igv/files/igv.sh.in (-8 / +5 lines)
Lines 1-9 Link Here
1
#!/bin/sh
1
#!/bin/sh
2
LANG=C
2
%%JAVA_HOME%%/bin/java -showversion --module-path="%%JAVAJARDIR%%/igv" -Xmx4g \
3
# phymem=$(free -m | awk '/^Mem:/{print $2}')
3
    @"%%JAVAJARDIR%%/igv/igv.args" \
4
#igvmem=$(($phymem / 3))
4
    -Dapple.laf.useScreenMenuBar=true \
5
# ARGS=-Xmx${igvmem}m
5
    -Djava.net.preferIPv4Stack=true \
6
java $ARGS \
6
    --module=org.igv/org.broad.igv.ui.Main "$@"
7
  -Dapple.laf.useScreenMenuBar=true \
8
  -Djava.net.preferIPv4Stack=true \
9
  -jar %%JAVAJARDIR%%/igv.jar
(-)/usr/ports/wip/igv/pkg-plist (+262 lines)
Line 0 Link Here
1
bin/igv
2
%%JAVAJARDIR%%/igv/AbsoluteLayout-RELEASE110.jar
3
%%JAVAJARDIR%%/igv/apache-client-2.15.9.jar
4
%%JAVAJARDIR%%/igv/arns-2.15.9.jar
5
%%JAVAJARDIR%%/igv/auth-2.15.9.jar
6
%%JAVAJARDIR%%/igv/aws-core-2.15.9.jar
7
%%JAVAJARDIR%%/igv/aws-json-protocol-2.15.9.jar
8
%%JAVAJARDIR%%/igv/aws-query-protocol-2.15.9.jar
9
%%JAVAJARDIR%%/igv/aws-xml-protocol-2.15.9.jar
10
%%JAVAJARDIR%%/igv/batik-awt-util-1.11.jar
11
%%JAVAJARDIR%%/igv/batik-codec-1.11.jar
12
%%JAVAJARDIR%%/igv/batik-constants-1.11.jar
13
%%JAVAJARDIR%%/igv/batik-dom-1.11.jar
14
%%JAVAJARDIR%%/igv/batik-ext-1.11.jar
15
%%JAVAJARDIR%%/igv/batik-i18n-1.11.jar
16
%%JAVAJARDIR%%/igv/batik-svggen-1.11.jar
17
%%JAVAJARDIR%%/igv/batik-transcoder-1.11.jar
18
%%JAVAJARDIR%%/igv/batik-util-1.11.jar
19
%%JAVAJARDIR%%/igv/batik-xml-1.11.jar
20
%%JAVAJARDIR%%/igv/cognitoidentity-2.15.9.jar
21
%%JAVAJARDIR%%/igv/commons-codec-1.11.jar
22
%%JAVAJARDIR%%/igv/commons-collections-20040616.jar
23
%%JAVAJARDIR%%/igv/commons-compress-1.19.jar
24
%%JAVAJARDIR%%/igv/commons-configuration-1.10.jar
25
%%JAVAJARDIR%%/igv/commons-io-2.6.jar
26
%%JAVAJARDIR%%/igv/commons-jexl-2.1.1.jar
27
%%JAVAJARDIR%%/igv/commons-lang-2.6.jar
28
%%JAVAJARDIR%%/igv/commons-lang3-3.9.jar
29
%%JAVAJARDIR%%/igv/commons-logging-1.2.jar
30
%%JAVAJARDIR%%/igv/commons-math3-3.6.1.jar
31
%%JAVAJARDIR%%/igv/dsiutils-2.3.3.jar
32
%%JAVAJARDIR%%/igv/eventstream-1.0.1.jar
33
%%JAVAJARDIR%%/igv/fastutil-7.0.12.jar
34
%%JAVAJARDIR%%/igv/genomes/1kg_ref.chrom.sizes
35
%%JAVAJARDIR%%/igv/genomes/1kg_v37.chrom.sizes
36
%%JAVAJARDIR%%/igv/genomes/1kg_v37_alias.tab
37
%%JAVAJARDIR%%/igv/genomes/ABaumannii_ATCC_17978.chrom.sizes
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%%JAVAJARDIR%%/igv/genomes/ABaumannii_AYE_uid61637.chrom.sizes
39
%%JAVAJARDIR%%/igv/genomes/AGPv3.31.chrom.sizes
40
%%JAVAJARDIR%%/igv/genomes/AgamP3.chrom.sizes
41
%%JAVAJARDIR%%/igv/genomes/Aplysia.chrom.sizes
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%%JAVAJARDIR%%/igv/genomes/B73.chrom.sizes
43
%%JAVAJARDIR%%/igv/genomes/CCAF000000000.chrom.sizes
44
%%JAVAJARDIR%%/igv/genomes/CE_1.0.chrom.sizes
45
%%JAVAJARDIR%%/igv/genomes/CSavignyi_v2.1.chrom.sizes
46
%%JAVAJARDIR%%/igv/genomes/D.discoideum.chrom.sizes
47
%%JAVAJARDIR%%/igv/genomes/EBV_Type2.chrom.sizes
48
%%JAVAJARDIR%%/igv/genomes/Foxy4287.chrom.sizes
49
%%JAVAJARDIR%%/igv/genomes/GCF_000233375.1.chrom.sizes
50
%%JAVAJARDIR%%/igv/genomes/GSM552910.chrom.sizes
51
%%JAVAJARDIR%%/igv/genomes/GSM552910_alias.tab
52
%%JAVAJARDIR%%/igv/genomes/Glamblia_2.0.chrom.sizes
53
%%JAVAJARDIR%%/igv/genomes/HHV4_Type1.chrom.sizes
54
%%JAVAJARDIR%%/igv/genomes/ITAG2.3.chrom.sizes
55
%%JAVAJARDIR%%/igv/genomes/ITAG2.3_alias.tab
56
%%JAVAJARDIR%%/igv/genomes/M74568.chrom.sizes
57
%%JAVAJARDIR%%/igv/genomes/MusPutFur1.0.chrom.sizes
58
%%JAVAJARDIR%%/igv/genomes/MusaAcuminata.chrom.sizes
59
%%JAVAJARDIR%%/igv/genomes/MusaBalbisianaPKWv1.chrom.sizes
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%%JAVAJARDIR%%/igv/genomes/NC_000913.2.chrom.sizes
61
%%JAVAJARDIR%%/igv/genomes/NC_000913.2_alias.tab
62
%%JAVAJARDIR%%/igv/genomes/NC_000913.chrom.sizes
63
%%JAVAJARDIR%%/igv/genomes/NC_000964.chrom.sizes
64
%%JAVAJARDIR%%/igv/genomes/NC_001405.chrom.sizes
65
%%JAVAJARDIR%%/igv/genomes/NC_001422.chrom.sizes
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%%JAVAJARDIR%%/igv/genomes/NC_001623.chrom.sizes
67
%%JAVAJARDIR%%/igv/genomes/NC_001722.chrom.sizes
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%%JAVAJARDIR%%/igv/genomes/NC_001802.chrom.sizes
69
%%JAVAJARDIR%%/igv/genomes/NC_002655.2.chrom.sizes
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%%JAVAJARDIR%%/igv/genomes/NC_002755.chrom.sizes
71
%%JAVAJARDIR%%/igv/genomes/NC_002929.chrom.sizes
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%%JAVAJARDIR%%/igv/genomes/NC_003112.chrom.sizes
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%%JAVAJARDIR%%/igv/genomes/NC_003116.chrom.sizes
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%%JAVAJARDIR%%/igv/genomes/NC_004917.chrom.sizes
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%%JAVAJARDIR%%/igv/genomes/NC_008601.chrom.sizes
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%%JAVAJARDIR%%/igv/genomes/NC_008767.chrom.sizes
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%%JAVAJARDIR%%/igv/genomes/NC_009012.chrom.sizes
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%%JAVAJARDIR%%/igv/genomes/NC_009012_alias.tab
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%%JAVAJARDIR%%/igv/genomes/NC_012920.chrom.sizes
80
%%JAVAJARDIR%%/igv/genomes/NC_016856.chrom.sizes
81
%%JAVAJARDIR%%/igv/genomes/O_Sativa_r6.chrom.sizes
82
%%JAVAJARDIR%%/igv/genomes/OryCun2.0.chrom.sizes
83
%%JAVAJARDIR%%/igv/genomes/Pf3D7_v9.0.chrom.sizes
84
%%JAVAJARDIR%%/igv/genomes/Pf3D7_v9.0_alias.tab
85
%%JAVAJARDIR%%/igv/genomes/PlasmoDB_24.chrom.sizes
86
%%JAVAJARDIR%%/igv/genomes/PlasmoDB_7.0.chrom.sizes
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%%JAVAJARDIR%%/igv/genomes/PlasmoDB_8.2.chrom.sizes
88
%%JAVAJARDIR%%/igv/genomes/Plasmodium_3D7_v2.1.chrom.sizes
89
%%JAVAJARDIR%%/igv/genomes/Plasmodium_3D7_v5.5.chrom.sizes
90
%%JAVAJARDIR%%/igv/genomes/Plasmodium_6.1.chrom.sizes
91
%%JAVAJARDIR%%/igv/genomes/SL2.31.chrom.sizes
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%%JAVAJARDIR%%/igv/genomes/SL2.40.chrom.sizes
93
%%JAVAJARDIR%%/igv/genomes/U00096.2.chrom.sizes
94
%%JAVAJARDIR%%/igv/genomes/U00096.2_alias.tab
95
%%JAVAJARDIR%%/igv/genomes/VcholeraeN16961.chrom.sizes
96
%%JAVAJARDIR%%/igv/genomes/WS201.chrom.sizes
97
%%JAVAJARDIR%%/igv/genomes/WS220.chrom.sizes
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%%JAVAJARDIR%%/igv/genomes/WS220_alias.tab
99
%%JAVAJARDIR%%/igv/genomes/WS245.chrom.sizes
100
%%JAVAJARDIR%%/igv/genomes/Y55.chrom.sizes
101
%%JAVAJARDIR%%/igv/genomes/ZmB73_5a.chrom.sizes
102
%%JAVAJARDIR%%/igv/genomes/ZmB73_5a_alias.tab
103
%%JAVAJARDIR%%/igv/genomes/anidulans_4.1.chrom.sizes
104
%%JAVAJARDIR%%/igv/genomes/anidulans_4.1_alias.tab
105
%%JAVAJARDIR%%/igv/genomes/b37.chrom.sizes
106
%%JAVAJARDIR%%/igv/genomes/b37_alias.tab
107
%%JAVAJARDIR%%/igv/genomes/bosTau3.chrom.sizes
108
%%JAVAJARDIR%%/igv/genomes/bosTau3_alias.tab
109
%%JAVAJARDIR%%/igv/genomes/bosTau4.chrom.sizes
110
%%JAVAJARDIR%%/igv/genomes/bosTau4_alias.tab
111
%%JAVAJARDIR%%/igv/genomes/bosTau6.chrom.sizes
112
%%JAVAJARDIR%%/igv/genomes/bosTau6_alias.tab
113
%%JAVAJARDIR%%/igv/genomes/bosTau7.chrom.sizes
114
%%JAVAJARDIR%%/igv/genomes/bosTau7_alias.tab
115
%%JAVAJARDIR%%/igv/genomes/bosTau8.chrom.sizes
116
%%JAVAJARDIR%%/igv/genomes/ca21.chrom.sizes
117
%%JAVAJARDIR%%/igv/genomes/canFam2.chrom.sizes
118
%%JAVAJARDIR%%/igv/genomes/canFam3.chrom.sizes
119
%%JAVAJARDIR%%/igv/genomes/candida.chrom.sizes
120
%%JAVAJARDIR%%/igv/genomes/cavPor3.chrom.sizes
121
%%JAVAJARDIR%%/igv/genomes/ce10.chrom.sizes
122
%%JAVAJARDIR%%/igv/genomes/ce11.chrom.sizes
123
%%JAVAJARDIR%%/igv/genomes/ce4.chrom.sizes
124
%%JAVAJARDIR%%/igv/genomes/ce6.chrom.sizes
125
%%JAVAJARDIR%%/igv/genomes/danRer10.chrom.sizes
126
%%JAVAJARDIR%%/igv/genomes/danRer11.chrom.sizes
127
%%JAVAJARDIR%%/igv/genomes/danRer6.chrom.sizes
128
%%JAVAJARDIR%%/igv/genomes/danRer7.chrom.sizes
129
%%JAVAJARDIR%%/igv/genomes/dm2.chrom.sizes
130
%%JAVAJARDIR%%/igv/genomes/dm3.chrom.sizes
131
%%JAVAJARDIR%%/igv/genomes/dm6.chrom.sizes
132
%%JAVAJARDIR%%/igv/genomes/dmel_5.9.chrom.sizes
133
%%JAVAJARDIR%%/igv/genomes/dmel_r5.22.chrom.sizes
134
%%JAVAJARDIR%%/igv/genomes/dmel_r5.33.chrom.sizes
135
%%JAVAJARDIR%%/igv/genomes/equCab2.chrom.sizes
136
%%JAVAJARDIR%%/igv/genomes/felCat5.chrom.sizes
137
%%JAVAJARDIR%%/igv/genomes/galGal3.chrom.sizes
138
%%JAVAJARDIR%%/igv/genomes/galGal4.chrom.sizes
139
%%JAVAJARDIR%%/igv/genomes/galGal5.chrom.sizes
140
%%JAVAJARDIR%%/igv/genomes/gasAcu1.chrom.sizes
141
%%JAVAJARDIR%%/igv/genomes/gmax10.chrom.sizes
142
%%JAVAJARDIR%%/igv/genomes/gmax8.chrom.sizes
143
%%JAVAJARDIR%%/igv/genomes/hg16.chrom.sizes
144
%%JAVAJARDIR%%/igv/genomes/hg17.chrom.sizes
145
%%JAVAJARDIR%%/igv/genomes/hg18.chrom.sizes
146
%%JAVAJARDIR%%/igv/genomes/hg19.chrom.sizes
147
%%JAVAJARDIR%%/igv/genomes/hg19_alias.tab
148
%%JAVAJARDIR%%/igv/genomes/hg38.chrom.sizes
149
%%JAVAJARDIR%%/igv/genomes/laevis_7.1.chrom.sizes
150
%%JAVAJARDIR%%/igv/genomes/lmjr.chrom.sizes
151
%%JAVAJARDIR%%/igv/genomes/lmjr_4.0.chrom.sizes
152
%%JAVAJARDIR%%/igv/genomes/lmjr_4.0_alias.tab
153
%%JAVAJARDIR%%/igv/genomes/me49.chrom.sizes
154
%%JAVAJARDIR%%/igv/genomes/mg8.chrom.sizes
155
%%JAVAJARDIR%%/igv/genomes/mm10.chrom.sizes
156
%%JAVAJARDIR%%/igv/genomes/mm7.chrom.sizes
157
%%JAVAJARDIR%%/igv/genomes/mm8.chrom.sizes
158
%%JAVAJARDIR%%/igv/genomes/mm9.chrom.sizes
159
%%JAVAJARDIR%%/igv/genomes/monDom5.chrom.sizes
160
%%JAVAJARDIR%%/igv/genomes/nc10.chrom.sizes
161
%%JAVAJARDIR%%/igv/genomes/nc10_alias.tab
162
%%JAVAJARDIR%%/igv/genomes/ncrassa_v3.chrom.sizes
163
%%JAVAJARDIR%%/igv/genomes/osativa_6.1.chrom.sizes
164
%%JAVAJARDIR%%/igv/genomes/osativa_6.1_alias.tab
165
%%JAVAJARDIR%%/igv/genomes/osativa_7.chrom.sizes
166
%%JAVAJARDIR%%/igv/genomes/oviAri3.chrom.sizes
167
%%JAVAJARDIR%%/igv/genomes/panTro2.chrom.sizes
168
%%JAVAJARDIR%%/igv/genomes/panTro3.chrom.sizes
169
%%JAVAJARDIR%%/igv/genomes/panTro4.chrom.sizes
170
%%JAVAJARDIR%%/igv/genomes/ppatens_1.2.chrom.sizes
171
%%JAVAJARDIR%%/igv/genomes/pvivax.chrom.sizes
172
%%JAVAJARDIR%%/igv/genomes/pvivax_alias.tab
173
%%JAVAJARDIR%%/igv/genomes/rheMac2.chrom.sizes
174
%%JAVAJARDIR%%/igv/genomes/rheMac3.chrom.sizes
175
%%JAVAJARDIR%%/igv/genomes/rheMac8.chrom.sizes
176
%%JAVAJARDIR%%/igv/genomes/rn4.chrom.sizes
177
%%JAVAJARDIR%%/igv/genomes/rn5.chrom.sizes
178
%%JAVAJARDIR%%/igv/genomes/rn6.chrom.sizes
179
%%JAVAJARDIR%%/igv/genomes/sacCer1.chrom.sizes
180
%%JAVAJARDIR%%/igv/genomes/sacCer2.chrom.sizes
181
%%JAVAJARDIR%%/igv/genomes/sacCer2_alias.tab
182
%%JAVAJARDIR%%/igv/genomes/sacCer3.chrom.sizes
183
%%JAVAJARDIR%%/igv/genomes/sacCer3_alias.tab
184
%%JAVAJARDIR%%/igv/genomes/sacCer62.chrom.sizes
185
%%JAVAJARDIR%%/igv/genomes/sacCer62_alias.tab
186
%%JAVAJARDIR%%/igv/genomes/sclerotiorum.chrom.sizes
187
%%JAVAJARDIR%%/igv/genomes/sk1.chrom.sizes
188
%%JAVAJARDIR%%/igv/genomes/spombe_1.55.chrom.sizes
189
%%JAVAJARDIR%%/igv/genomes/spombe_709.chrom.sizes
190
%%JAVAJARDIR%%/igv/genomes/spur_2.1.chrom.sizes
191
%%JAVAJARDIR%%/igv/genomes/spur_2.5.chrom.sizes
192
%%JAVAJARDIR%%/igv/genomes/spur_3.0.chrom.sizes
193
%%JAVAJARDIR%%/igv/genomes/susScr3.chrom.sizes
194
%%JAVAJARDIR%%/igv/genomes/susScrofa.chrom.sizes
195
%%JAVAJARDIR%%/igv/genomes/taeGut1.chrom.sizes
196
%%JAVAJARDIR%%/igv/genomes/tair10.chrom.sizes
197
%%JAVAJARDIR%%/igv/genomes/tair10_alias.tab
198
%%JAVAJARDIR%%/igv/genomes/tair8.chrom.sizes
199
%%JAVAJARDIR%%/igv/genomes/tair9.chrom.sizes
200
%%JAVAJARDIR%%/igv/genomes/tb427_4.2.chrom.sizes
201
%%JAVAJARDIR%%/igv/genomes/tb927.chrom.sizes
202
%%JAVAJARDIR%%/igv/genomes/tbgambi.chrom.sizes
203
%%JAVAJARDIR%%/igv/genomes/tbgambi_4.0.chrom.sizes
204
%%JAVAJARDIR%%/igv/genomes/tbgambi_4.0_alias.tab
205
%%JAVAJARDIR%%/igv/genomes/tbrucei927_4.0.chrom.sizes
206
%%JAVAJARDIR%%/igv/genomes/tbrucei927_4.0_alias.tab
207
%%JAVAJARDIR%%/igv/genomes/tbrucei927_5.0.chrom.sizes
208
%%JAVAJARDIR%%/igv/genomes/tcas_2.0.chrom.sizes
209
%%JAVAJARDIR%%/igv/genomes/tcas_3.0.chrom.sizes
210
%%JAVAJARDIR%%/igv/genomes/vvinifera.chrom.sizes
211
%%JAVAJARDIR%%/igv/genomes/ws241.chrom.sizes
212
%%JAVAJARDIR%%/igv/genomes/xenTro2.chrom.sizes
213
%%JAVAJARDIR%%/igv/genomes/xenTro9.chrom.sizes
214
%%JAVAJARDIR%%/igv/genomes/zebrafish.chrom.sizes
215
%%JAVAJARDIR%%/igv/goby-io-3.3.1.jar
216
%%JAVAJARDIR%%/igv/gson-2.8.5.jar
217
%%JAVAJARDIR%%/igv/guava-27.0.1-jre.jar
218
%%JAVAJARDIR%%/igv/htsjdk-2.23.0.jar
219
%%JAVAJARDIR%%/igv/http-client-spi-2.15.9.jar
220
%%JAVAJARDIR%%/igv/httpclient-4.5.9.jar
221
%%JAVAJARDIR%%/igv/httpcore-4.4.11.jar
222
%%JAVAJARDIR%%/igv/icb-utils-2.0.2.jar
223
%%JAVAJARDIR%%/igv/igv.args
224
%%JAVAJARDIR%%/igv/igv.jar
225
%%JAVAJARDIR%%/igv/j2objc-annotations-1.1.jar
226
%%JAVAJARDIR%%/igv/jackson-annotations-2.10.4.jar
227
%%JAVAJARDIR%%/igv/jackson-core-2.10.4.jar
228
%%JAVAJARDIR%%/igv/jackson-databind-2.10.4.jar
229
%%JAVAJARDIR%%/igv/jide-common-3.7.3.jar
230
%%JAVAJARDIR%%/igv/jsap-3.0.0.jar
231
%%JAVAJARDIR%%/igv/log4j-1.2-api-2.11.0.jar
232
%%JAVAJARDIR%%/igv/log4j-api-2.11.0.jar
233
%%JAVAJARDIR%%/igv/log4j-core-2.11.0.jar
234
%%JAVAJARDIR%%/igv/metrics-spi-2.15.9.jar
235
%%JAVAJARDIR%%/igv/netty-buffer-4.1.46.Final.jar
236
%%JAVAJARDIR%%/igv/netty-codec-4.1.46.Final.jar
237
%%JAVAJARDIR%%/igv/netty-codec-http-4.1.46.Final.jar
238
%%JAVAJARDIR%%/igv/netty-common-4.1.46.Final.jar
239
%%JAVAJARDIR%%/igv/netty-handler-4.1.46.Final.jar
240
%%JAVAJARDIR%%/igv/netty-nio-client-2.15.9.jar
241
%%JAVAJARDIR%%/igv/netty-reactive-streams-2.0.4.jar
242
%%JAVAJARDIR%%/igv/netty-reactive-streams-http-2.0.4.jar
243
%%JAVAJARDIR%%/igv/netty-resolver-4.1.46.Final.jar
244
%%JAVAJARDIR%%/igv/netty-transport-4.1.46.Final.jar
245
%%JAVAJARDIR%%/igv/netty-transport-native-epoll-4.1.46.Final-linux-x86_64.jar
246
%%JAVAJARDIR%%/igv/netty-transport-native-unix-common-4.1.46.Final.jar
247
%%JAVAJARDIR%%/igv/ngs-java-2.9.0.jar
248
%%JAVAJARDIR%%/igv/profiles-2.15.9.jar
249
%%JAVAJARDIR%%/igv/protobuf-java-3.7.0-rc1.jar
250
%%JAVAJARDIR%%/igv/protocol-core-2.15.9.jar
251
%%JAVAJARDIR%%/igv/reactive-streams-1.0.3.jar
252
%%JAVAJARDIR%%/igv/regions-2.15.9.jar
253
%%JAVAJARDIR%%/igv/s3-2.15.9.jar
254
%%JAVAJARDIR%%/igv/sdk-core-2.15.9.jar
255
%%JAVAJARDIR%%/igv/slf4j-api-1.7.28.jar
256
%%JAVAJARDIR%%/igv/slf4j-simple-1.7.26.jar
257
%%JAVAJARDIR%%/igv/snappy-java-1.1.7.3.jar
258
%%JAVAJARDIR%%/igv/sts-2.15.9.jar
259
%%JAVAJARDIR%%/igv/swing-layout-1.0.3.jar
260
%%JAVAJARDIR%%/igv/utils-2.15.9.jar
261
%%JAVAJARDIR%%/igv/xmlgraphics-commons-2.3.jar
262
share/pixmaps/igv.png

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