Attachment 224136 Details for Bug 255092 – patch

[patch] patch

bowtie2.patch (text/plain), 2.13 KB, created by Piotr Kubaj on 2021-04-15 15:18:11 UTC

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Creator: Piotr Kubaj

Created: 2021-04-15 15:18:11 UTC

Size: 2.13 KB

patch

obsolete

>diff f4d591bd8b0de20b12217f7f8c03b7b026b8a04d /usr/ports
>blob - 198cf295e73eb26465e7854c700baebedb515ea1
>file + biology/bowtie2/Makefile
>--- biology/bowtie2/Makefile
>+++ biology/bowtie2/Makefile
>@@ -12,7 +12,7 @@ LICENSE_FILE=	${WRKSRC}/LICENSE
> 
> # Requires a 64-bit processor and depends on hard-coded SSE instructions
> # Experimental support for AARCH64 as of 2.3.5
>-ONLY_FOR_ARCHS=	aarch64 amd64
>+ONLY_FOR_ARCHS=	aarch64 amd64 powerpc64le
> LIB_DEPENDS=	libtbb.so:devel/onetbb
> RUN_DEPENDS=	bash:shells/bash
> 
>@@ -23,11 +23,23 @@ USE_GITHUB=	yes
> SHEBANG_FILES=	bowtie2 bowtie2-build bowtie2-inspect \
> 		scripts/bowtie2-hbb.sh scripts/*.pl
> GH_ACCOUNT=	BenLangmead
>+GH_TUPLE=	nemequ:simde:422ed9c:simde
> 
> OPTIONS_DEFINE=	DOCS EXAMPLES
> 
> SUB_FILES=	bowtie2-test
> 
>+.include <bsd.port.options.mk>
>+
>+post-extract:
>+	(cd ${WRKSRC_simde}; \
>+                ${COPYTREE_SHARE} . ${WRKSRC}/third_party/simde/)
>+
>+
>+.if ${ARCH} != amd64
>+MAKE_ENV=	POPCNT_CAPABILITY=0
>+.endif
>+
> pre-configure:
> 	@${REINPLACE_CMD} \
> 		-e 's|^RELEASE_FLAGS|# RELEASE_FLAGS|' \
>blob - 100d7cba6fb89c6a0d340d78c554a149a47b395e
>file + biology/bowtie2/distinfo
>--- biology/bowtie2/distinfo
>+++ biology/bowtie2/distinfo
>@@ -1,3 +1,5 @@
>-TIMESTAMP = 1604617529
>+TIMESTAMP = 1618499065
> SHA256 (BenLangmead-bowtie2-v2.4.2_GH0.tar.gz) = ea33a1562faf759b21b3a905e20b87a3524ac4e53af8cd723d9a9f31ee159c8a
> SIZE (BenLangmead-bowtie2-v2.4.2_GH0.tar.gz) = 10590144
>+SHA256 (nemequ-simde-422ed9c_GH0.tar.gz) = 3e7e962b499212cdddcaeca973d1c15d71a4b620afb46113d936ce5c3a8236ba
>+SIZE (nemequ-simde-422ed9c_GH0.tar.gz) = 332230
>blob - 092870a96abf68ecd6cfe616676c2ab9fcf8ac1f
>file + biology/bowtie2/files/patch-Makefile
>--- biology/bowtie2/files/patch-Makefile
>+++ biology/bowtie2/files/patch-Makefile
>@@ -1,4 +1,4 @@
>---- Makefile.orig	2020-11-05 23:04:50 UTC
>+--- Makefile.orig	2020-10-06 03:46:41 UTC
> +++ Makefile
> @@ -24,7 +24,7 @@
>  PREFIX := /usr/local
>@@ -33,7 +33,7 @@
>    CPPFLAGS += -Ithird_party/simde
>    SANITIZER_FLAGS :=
> -else ifeq (ppc64le,$(shell uname -m))
>-+else ifeq (ppc64le,$(shell uname -p))
>++else ifeq (powerpc64le,$(shell uname -p))
>    BITS := 64
>    SSE_FLAG :=
>    CXXFLAGS += -fopenmp-simd

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pkubaj: maintainer-approval? (jwb)

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Attachments on bug 255092: 224136