Attachment 225511 Details for Bug 251626 – math/py-numpy: upgrade to 1.20.3

[patch] math/py-numpy: upgrade to 1.20.3

math_py-numpy.diff (text/plain), 116.75 KB, created by Thierry Thomas on 2021-06-02 20:14:53 UTC

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Creator: Thierry Thomas

Created: 2021-06-02 20:14:53 UTC

Size: 116.75 KB

patch

obsolete

>commit 301a11c1e9fd79dde667176f01443929d1d66824
>Author: Thierry Thomas <thierry@FreeBSD.org>
>Date:   Wed Jun 2 22:08:56 2021 +0200
>
>    math/py-numpy: upgrade to 1.20.3
>    
>    Release notes at <https://github.com/numpy/numpy/releases/tag/v1.20.3>.
>
>diff --git a/Mk/Uses/python.mk b/Mk/Uses/python.mk
>index fcaf479d8076..5e2682d8efd6 100644
>--- a/Mk/Uses/python.mk
>+++ b/Mk/Uses/python.mk
>@@ -640,7 +640,7 @@ CMAKE_ARGS+=	-DPython_ADDITIONAL_VERSIONS=${PYTHON_VER}
> 
> # Python 3rd-party modules
> PYGAME=		${PYTHON_PKGNAMEPREFIX}game>0:devel/py-game@${PY_FLAVOR}
>-PYNUMPY=	${PYTHON_PKGNAMEPREFIX}numpy>=1.16,1<1.20,1:math/py-numpy@${PY_FLAVOR}
>+PYNUMPY=	${PYTHON_PKGNAMEPREFIX}numpy>=1.16,1<1.21,1:math/py-numpy@${PY_FLAVOR}
> 
> # Common Python modules that can be needed but only for some versions of Python.
> .if ${PYTHON_REL} < 30500
>diff --git a/math/py-numpy/Makefile b/math/py-numpy/Makefile
>index b120e392c9bf..8addfb9e0b14 100644
>--- a/math/py-numpy/Makefile
>+++ b/math/py-numpy/Makefile
>@@ -1,16 +1,16 @@
> # Created by: Tony Maher
> 
> PORTNAME=	numpy
>-PORTVERSION=	1.16.6
>-PORTREVISION=	1
>+PORTVERSION=	1.20.3
> PORTEPOCH=	1
> CATEGORIES=	math python
> MASTER_SITES=	CHEESESHOP \
>-		https://docs.scipy.org/doc/${PORTNAME}-${PORTVERSION}/:doc
>+		https://numpy.org/doc/${PORTVERSION:R}/:doc
> PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
> DISTFILES=	${DISTNAME}${EXTRACT_SUFX} \
>-		${PORTNAME}-ref-${PORTVERSION:R}.1.pdf:doc \
>-		${PORTNAME}-user-${PORTVERSION:R}.1.pdf:doc
>+		${PORTNAME}-ref.pdf:doc \
>+		${PORTNAME}-user.pdf:doc
>+DIST_SUBDIR=	${PORTNAME}-${PORTVERSION:R}
> EXTRACT_ONLY=	${DISTNAME}${EXTRACT_SUFX}
> 
> MAINTAINER=	python@FreeBSD.org
>@@ -21,11 +21,11 @@ LICENSE_FILE=	${WRKSRC}/LICENSE.txt
> 
> TEST_DEPENDS=	${PYTHON_PKGNAMEPREFIX}pytest>=0:devel/py-pytest@${PY_FLAVOR}
> 
>-USES=		compiler:c11 fortran python:3.6+ zip
>-USE_PYTHON=	allflavors autoplist concurrent cython distutils
>+USES=		compiler:c11 fortran python:3.7+ zip
>+USE_PYTHON=	allflavors concurrent cython distutils
> 
> GCCLIBDIR_CMDS=	${FC} -print-file-name=libgfortran.so | ${SED} -e s/libgfortran.so//
>-LDFLAGS+=	-shared
>+LDFLAGS+=	-s
> PYDISTUTILS_BUILDARGS=		--fcompiler=gnu95
> PYDISTUTILS_CONFIGUREARGS=	--fcompiler=gnu95
> 
>@@ -49,14 +49,12 @@ SUITESPARSE_LIB_DEPENDS=libumfpack.so:math/suitesparse-umfpack
> post-extract:
> 	@${TOUCH} ${WRKSRC}/numpy/f2py/tests/src/temp
> 
>-post-patch:
>-	@${REINPLACE_CMD} -e 's|%%FC%%|${FC}|' ${WRKSRC}/numpy/distutils/fcompiler/gnu.py
>-	@${CP} ${FILESDIR}/site.cfg ${WRKSRC}/site.cfg
>-
>-post-patch-SUITESPARSE-off:
>+pre-configure-SUITESPARSE-off:
> 	@${REINPLACE_CMD} -e 's|:%%LOCALBASE%%/include/suitesparse||' ${WRKSRC}/site.cfg
> 
> pre-configure:
>+	@${REINPLACE_CMD} -e 's|%%FC%%|${FC}|' ${WRKSRC}/numpy/distutils/fcompiler/gnu.py
>+	@${CP} ${FILESDIR}/site.cfg ${WRKSRC}/site.cfg
> 	${REINPLACE_CMD} -e 's|%%LOCALBASE%%|${LOCALBASE}|g' \
> 		-e 's|%%BLASLIBS%%|${BLASLIBS}|; s|%%BLASNAME%%|${BLASNAME}|' \
> 		-e 's|%%LAPACKLIBS%%|${LAPACKLIBS}|; s|%%LIBRARIES%%|${LIBRARIES}|' \
>@@ -68,8 +66,8 @@ post-install:
> 
> post-install-DOCS-on:
> 	@${MKDIR} ${STAGEDIR}${DOCSDIR}
>-	${INSTALL_DATA} ${DISTDIR}/${PORTNAME}-ref-${PORTVERSION:R}.1.pdf ${STAGEDIR}${DOCSDIR}
>-	${INSTALL_DATA} ${DISTDIR}/${PORTNAME}-user-${PORTVERSION:R}.1.pdf ${STAGEDIR}${DOCSDIR}
>+	${INSTALL_DATA} ${_DISTDIR}/${PORTNAME}-ref.pdf ${STAGEDIR}${DOCSDIR}
>+	${INSTALL_DATA} ${_DISTDIR}/${PORTNAME}-user.pdf ${STAGEDIR}${DOCSDIR}
> 
> do-test:
> 	@cd ${WRKSRC} && ${PYTHON_CMD} runtests.py
>diff --git a/math/py-numpy/distinfo b/math/py-numpy/distinfo
>index 44663a5c50f5..7a8bcb26092b 100644
>--- a/math/py-numpy/distinfo
>+++ b/math/py-numpy/distinfo
>@@ -1,7 +1,7 @@
>-TIMESTAMP = 1588013658
>-SHA256 (numpy-1.16.6.zip) = e5cf3fdf13401885e8eea8170624ec96225e2174eb0c611c6f26dd33b489e3ff
>-SIZE (numpy-1.16.6.zip) = 5143340
>-SHA256 (numpy-ref-1.16.1.pdf) = 5296c4949c92d00ae2c94ce65b78369b8081995dc72447bb20b6518bfaed3552
>-SIZE (numpy-ref-1.16.1.pdf) = 5175448
>-SHA256 (numpy-user-1.16.1.pdf) = aa8c591eee4c537768854f19e3cf4b861280828c19eb9d2e6194ea230570ea75
>-SIZE (numpy-user-1.16.1.pdf) = 592508
>+TIMESTAMP = 1621965044
>+SHA256 (numpy-1.20/numpy-1.20.3.zip) = e55185e51b18d788e49fe8305fd73ef4470596b33fc2c1ceb304566b99c71a69
>+SIZE (numpy-1.20/numpy-1.20.3.zip) = 7761912
>+SHA256 (numpy-1.20/numpy-ref.pdf) = 39514faf26f4fecb697d771ba83e9340e35d3afd22478ab7e641f9daed67e84a
>+SIZE (numpy-1.20/numpy-ref.pdf) = 7362241
>+SHA256 (numpy-1.20/numpy-user.pdf) = 20cc665d19cbb4a2dfe7505a06dc23ae978982fec27e3108ddb332110bc2a94c
>+SIZE (numpy-1.20/numpy-user.pdf) = 4977046
>diff --git a/math/py-numpy/files/patch-numpy-distutils-exec_command.py b/math/py-numpy/files/patch-numpy-distutils-exec_command.py
>index ea297206195c..a99e5814811d 100644
>--- a/math/py-numpy/files/patch-numpy-distutils-exec_command.py
>+++ b/math/py-numpy/files/patch-numpy-distutils-exec_command.py
>@@ -1,6 +1,6 @@
>---- numpy/distutils/exec_command.py.orig	2017-09-29 20:10:10 UTC
>+--- numpy/distutils/exec_command.py.orig	2021-05-08 18:35:28 UTC
> +++ numpy/distutils/exec_command.py
>-@@ -231,7 +231,7 @@ def _exec_command(command, use_shell=Non
>+@@ -261,7 +261,7 @@ def _exec_command(command, use_shell=None, use_tee = N
>  
>      if os.name == 'posix' and use_shell:
>          # On POSIX, subprocess always uses /bin/sh, override
>diff --git a/math/py-numpy/files/patch-numpy-distutils-fcompiler-__init__.py b/math/py-numpy/files/patch-numpy-distutils-fcompiler-__init__.py
>index 4c52b846e1b4..63c4d24b2f9b 100644
>--- a/math/py-numpy/files/patch-numpy-distutils-fcompiler-__init__.py
>+++ b/math/py-numpy/files/patch-numpy-distutils-fcompiler-__init__.py
>@@ -1,6 +1,6 @@
>---- numpy/distutils/fcompiler/__init__.py.orig	2019-01-31 02:31:08 UTC
>+--- numpy/distutils/fcompiler/__init__.py.orig	2021-05-09 10:38:00 UTC
> +++ numpy/distutils/fcompiler/__init__.py
>-@@ -177,7 +177,7 @@ class FCompiler(CCompiler):
>+@@ -171,7 +171,7 @@ class FCompiler(CCompiler):
>      # gnu95 compiler type when there are F90 sources.
>      suggested_f90_compiler = None
>  
>diff --git a/math/py-numpy/files/patch-numpy-distutils-fcompiler-gnu.py b/math/py-numpy/files/patch-numpy-distutils-fcompiler-gnu.py
>index c34798b4f9a1..5efb5d0a3d37 100644
>--- a/math/py-numpy/files/patch-numpy-distutils-fcompiler-gnu.py
>+++ b/math/py-numpy/files/patch-numpy-distutils-fcompiler-gnu.py
>@@ -1,6 +1,6 @@
>---- numpy/distutils/fcompiler/gnu.py.orig	2015-09-13 16:21:27 UTC
>+--- numpy/distutils/fcompiler/gnu.py.orig	2021-05-08 21:14:06 UTC
> +++ numpy/distutils/fcompiler/gnu.py
>-@@ -83,7 +83,7 @@ class GnuFCompiler(FCompiler):
>+@@ -79,7 +79,7 @@ class GnuFCompiler(FCompiler):
>              return None
>          return v[1]
>  
>@@ -9,7 +9,7 @@
>      executables = {
>          'version_cmd'  : [None, "-dumpversion"],
>          'compiler_f77' : [None, "-g", "-Wall", "-fno-second-underscore"],
>-@@ -107,11 +107,13 @@ class GnuFCompiler(FCompiler):
>+@@ -103,11 +103,13 @@ class GnuFCompiler(FCompiler):
>          for key in ['version_cmd', 'compiler_f77', 'linker_so', 'linker_exe']:
>              executables[key].append('-mno-cygwin')
>  
>@@ -24,7 +24,7 @@
>          if sys.platform == 'darwin':
>              target = os.environ.get('MACOSX_DEPLOYMENT_TARGET', None)
>              # If MACOSX_DEPLOYMENT_TARGET is set, we simply trust the value
>-@@ -265,7 +267,7 @@ class Gnu95FCompiler(GnuFCompiler):
>+@@ -287,7 +289,7 @@ class Gnu95FCompiler(GnuFCompiler):
>                      self.executables[key].append('-mno-cygwin')
>          return v
>  
>diff --git a/math/py-numpy/files/patch-numpy-distutils-system_info.py b/math/py-numpy/files/patch-numpy-distutils-system_info.py
>index 299f98311648..4ba9667e65c6 100644
>--- a/math/py-numpy/files/patch-numpy-distutils-system_info.py
>+++ b/math/py-numpy/files/patch-numpy-distutils-system_info.py
>@@ -1,6 +1,6 @@
>---- numpy/distutils/system_info.py.orig	2019-08-27 21:01:36 UTC
>+--- numpy/distutils/system_info.py.orig	2021-05-09 10:38:00 UTC
> +++ numpy/distutils/system_info.py
>-@@ -172,6 +172,8 @@ def _c_string_literal(s):
>+@@ -209,6 +209,8 @@ def _c_string_literal(s):
>      Convert a python string into a literal suitable for inclusion into C code
>      """
>      # only these three characters are forbidden in C strings
>@@ -9,7 +9,7 @@
>      s = s.replace('\\', r'\\')
>      s = s.replace('"',  r'\"')
>      s = s.replace('\n', r'\n')
>-@@ -1112,8 +1114,8 @@ class atlas_info(system_info):
>+@@ -1322,8 +1324,8 @@ class atlas_info(system_info):
>      dir_env_var = 'ATLAS'
>      _lib_names = ['f77blas', 'cblas']
>      if sys.platform[:7] == 'freebsd':
>@@ -20,45 +20,3 @@
>      else:
>          _lib_atlas = ['atlas']
>          _lib_lapack = ['lapack']
>-@@ -1633,11 +1635,6 @@ class blas_opt_info(system_info):
>-             self.set_info(**blis_info)
>-             return
>- 
>--        openblas_info = get_info('openblas')
>--        if openblas_info:
>--            self.set_info(**openblas_info)
>--            return
>--
>-         atlas_info = get_info('atlas_3_10_blas_threads')
>-         if not atlas_info:
>-             atlas_info = get_info('atlas_3_10_blas')
>-@@ -1730,18 +1727,17 @@ class blas_info(system_info):
>-                 # check we can link (find library)
>-                 # some systems have separate cblas and blas libs. First
>-                 # check for cblas lib, and if not present check for blas lib.
>--                try:
>--                    c.link_executable(obj, os.path.join(tmpdir, "a.out"),
>--                                      libraries=["cblas"],
>--                                      library_dirs=info['library_dirs'],
>--                                      extra_postargs=info.get('extra_link_args', []))
>--                    res = "cblas"
>--                except distutils.ccompiler.LinkError:
>--                    c.link_executable(obj, os.path.join(tmpdir, "a.out"),
>--                                      libraries=["blas"],
>--                                      library_dirs=info['library_dirs'],
>--                                      extra_postargs=info.get('extra_link_args', []))
>--                    res = "blas"
>-+                res = None
>-+                for libname in ['cblas', 'blas', 'openblas']:
>-+                    try:
>-+                        c.link_executable(obj, os.path.join(tmpdir, "a.out"),
>-+                                          libraries=[libname],
>-+                                          library_dirs=info['library_dirs'],
>-+                                          extra_postargs=info.get('extra_link_args', []))
>-+                        res = libname
>-+                        break
>-+                    except distutils.ccompiler.LinkError:
>-+                        pass
>-             except distutils.ccompiler.CompileError:
>-                 res = None
>-         finally:
>diff --git a/math/py-numpy/pkg-plist b/math/py-numpy/pkg-plist
>new file mode 100644
>index 000000000000..38996ce65b20
>--- /dev/null
>+++ b/math/py-numpy/pkg-plist
>@@ -0,0 +1,1376 @@
>+bin/f2py
>+bin/f2py3
>+bin/f2py%%PYTHON_VER%%
>+%%PYTHON_SITELIBDIR%%/numpy/LICENSE.txt
>+%%PYTHON_SITELIBDIR%%/numpy/__config__.py
>+%%PYTHON_SITELIBDIR%%/numpy/__init__.cython-30.pxd
>+%%PYTHON_SITELIBDIR%%/numpy/__init__.pxd
>+%%PYTHON_SITELIBDIR%%/numpy/__init__.py
>+%%PYTHON_SITELIBDIR%%/numpy/__init__.pyi
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/__config__.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/__config__.cpython-%%PYTHON_SUFFIX%%.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/__init__.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/__init__.cpython-%%PYTHON_SUFFIX%%.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/_distributor_init.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/_distributor_init.cpython-%%PYTHON_SUFFIX%%.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/_globals.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/_globals.cpython-%%PYTHON_SUFFIX%%.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/_pytesttester.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/_pytesttester.cpython-%%PYTHON_SUFFIX%%.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/conftest.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/conftest.cpython-%%PYTHON_SUFFIX%%.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/ctypeslib.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/ctypeslib.cpython-%%PYTHON_SUFFIX%%.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/dual.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/dual.cpython-%%PYTHON_SUFFIX%%.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/matlib.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/matlib.cpython-%%PYTHON_SUFFIX%%.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/setup.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/setup.cpython-%%PYTHON_SUFFIX%%.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/version.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/version.cpython-%%PYTHON_SUFFIX%%.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/_distributor_init.py
>+%%PYTHON_SITELIBDIR%%/numpy/_globals.py
>+%%PYTHON_SITELIBDIR%%/numpy/_pytesttester.py
>+%%PYTHON_SITELIBDIR%%/numpy/char.pyi
>+%%PYTHON_SITELIBDIR%%/numpy/compat/__init__.py
>+%%PYTHON_SITELIBDIR%%/numpy/compat/__pycache__/__init__.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/compat/__pycache__/__init__.cpython-%%PYTHON_SUFFIX%%.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/compat/__pycache__/_inspect.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/compat/__pycache__/_inspect.cpython-%%PYTHON_SUFFIX%%.pyc
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>+%%PYTHON_SITELIBDIR%%/numpy/compat/__pycache__/setup.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/compat/__pycache__/setup.cpython-%%PYTHON_SUFFIX%%.pyc
>+%%PYTHON_SITELIBDIR%%/numpy/compat/_inspect.py
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>+%%PYTHON_SITELIBDIR%%/numpy/compat/setup.py
>+%%PYTHON_SITELIBDIR%%/numpy/compat/tests/__init__.py
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>+%%PYTHON_SITELIBDIR%%/numpy/compat/tests/test_compat.py
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Attachments on bug 251626: 220299 | 220988 | 221265 | 223412 | 223519 | 224438 | 225259 | 225274 | 225466 | 225467 | 225511 | 227029