Attachment #227392 for bug #256861

Lines 759-764 Link Here

(-)b/math/Makefile (+1 lines)
759	SUBDIR += plplot-ada	759	SUBDIR += plplot-ada
760	SUBDIR += poly2tri	760	SUBDIR += poly2tri
761	SUBDIR += polylib	761	SUBDIR += polylib
		762	SUBDIR += polymake
762	SUBDIR += primegen	763	SUBDIR += primegen
763	SUBDIR += primesieve	764	SUBDIR += primesieve
764	SUBDIR += primme	765	SUBDIR += primme




# Created by: Philipp Ost <bsd@philippost.de>

PORTNAME=	polymake
DISTVERSION=	4.4
CATEGORIES=	math
MASTER_SITES=	https://polymake.org/lib/exe/fetch.php/download/
DISTNAME=	${PORTNAME}-${DISTVERSION}-minimal

MAINTAINER=	bsd@philippost.de
COMMENT=	Software package for research in polyhedral geometry

LICENSE=	GPLv2+
LICENSE_FILE=	${WRKSRC}/COPYING

BUILD_DEPENDS=	boost-libs>=1.72:devel/boost-libs \
		ninja:devel/ninja \
		permlib>=0.2.9:math/permlib \
		p5-XML-SAX>=1.02:textproc/p5-XML-SAX \
		p5-XML-Writer>=0.900:textproc/p5-XML-Writer \
		p5-Term-ReadLine-Gnu>=1.37:devel/p5-Term-ReadLine-Gnu \
		p5-Term-ReadKey>=2.38:devel/p5-Term-ReadKey \
		p5-JSON>=2.97:converters/p5-JSON
LIB_DEPENDS=	libcddgmp.so:math/cddlib \
		libflint.so:math/flint2 \
		libgmpxx.so:math/gmp \
		libmpfr.so:math/mpfr
RUN_DEPENDS=	bash>=5.0:shells/bash \
		boost-libs>=1.72:devel/boost-libs \
		permlib>=0.2.9:math/permlib \
		p5-XML-SAX>=1.02:textproc/p5-XML-SAX \
		p5-XML-Writer>=0.900:textproc/p5-XML-Writer \
		p5-Term-ReadLine-Gnu>=1.37:devel/p5-Term-ReadLine-Gnu \
		p5-Term-ReadKey>=2.38:devel/p5-Term-ReadKey \
		p5-JSON>=2.97:converters/p5-JSON

USES=		compiler:c++14-lang gmake gnome perl5 readline shebangfix \
		tar:bzip2
USE_GNOME=	libxml2 libxslt
USE_LDCONFIG=	${PREFIX}/lib
USE_PERL5=	build run
SHEBANG_FILES=	resources/host-agent/bin/env resources/host-agent/bin/polymake
SHEBANG_GLOB=	*.pl *.sh

# polymake's configure script expects options to be disabled by --without-option
# and most options to be enabled by --with-option=DIR
HAS_CONFIGURE=	yes
CONFIGURE_ARGS=	--prefix=${PREFIX} \
		--exec-prefix=${PREFIX} \
		--bindir=${PREFIX}/bin \
		--includedir=${PREFIX}/include \
		--libdir=${PREFIX}/lib \
		--libexecdir=${PREFIX}/libexec/polymake \
		--datadir=${PREFIX}/share/polymake \
		--docdir=${DOCSDIR} \
		--without-prereq \
		--with-libcxx \
		--with-cdd=${LOCALBASE} \
		--with-flint=${LOCALBASE} \
		--with-permlib=${LOCALBASE}/lib \
		--without-java \
		--without-javaview \
		--without-sympol
CONFIGURE_LOG=	build/bundled.log

# Optional features; SoPlex defaults to off due to licencsing and SCIP defaults
# to off due to a dependency on libsoplex.so.
OPTIONS_DEFINE=	LRS NATIVE NORMALIZ OPENMP PPL SCIP SINGULAR SOPLEX TESTS
OPTIONS_DEFAULT=	BLISS LRS NORMALIZ OPENMP PPL SINGULAR
# Exlude lrslib on i386 and powerpc because it is marked BROKEN for those
# architectures
OPTIONS_EXCLUDE_i386=	LRS
OPTIONS_EXCLUDE_powerpc=	LRS
OPTIONS_SUB=	yes

# polymake needs either math/bliss or math/nauty to compute graph automorphism
# groups
OPTIONS_SINGLE=	GRAPH
OPTIONS_SINGLE_GRAPH=	BLISS NAUTY

BLISS_DESC=	Compute graph automorphism groups using bliss
GRAPH_DESC=	Graph automorphism groups
LRS_DESC=	Convex hull computation and vertex enumeration
NATIVE_DESC=	Build with native optimizations (-march=native)
NAUTY_DESC=	Compute graph automorphism groups using nauty
NORMALIZ_DESC=	Computations in affine monoids and lattice polytopes
PPL_DESC=	Manipulation of convex polyhedra
SCIP_DESC=	Solver for mixed integer linear and nonlinear problems
SINGULAR_DESC=	Computation of Groebner bases
SOPLEX_DESC=	Solver for linear programming problems
TESTS_DESC=	Run bundled self tests after build

BLISS_CONFIGURE_ON=	--with-bliss=${LOCALBASE}
BLISS_BUILD_DEPENDS=	bliss-graph-tool>=0.73:math/bliss
BLISS_RUN_DEPENDS=	bliss-graph-tool>=0.73:math/bliss
BLISS_CONFIGURE_OFF=	--without-bliss

NAUTY_WRKSRC=	${:!${MAKE} -V WRKSRC -C ${.CURDIR:H:H}/math/nauty!}
NAUTY_CONFIGURE_ON=	--with-nauty-src=${NAUTY_WRKSRC}
NAUTY_BUILD_DEPENDS=	${NONEXISTENT}:math/nauty:patch
NAUTY_RUN_DEPENDS=	nauty>=27:math/nauty
# Do not explicitly disable nauty. polymake's configure script currently fails
# if a reconfiguration is triggered. However, it is aware that bliss and nauty
# are mutually exclusive and disables nauty if BLISS=on.
#NAUTY_CONFIGURE_OFF=	--without-nauty

LRS_CONFIGURE_ON=	--with-lrs=${LOCALBASE} \
			--with-lrs-include=${LOCALBASE}/include/lrslib
LRS_LIB_DEPENDS=	liblrs.so:math/lrslib
LRS_CONFIGURE_OFF=	--without-lrs

NATIVE_CONFIGURE_OFF=	--without-native

NORMALIZ_CONFIGURE_ON=	--with-libnormaliz=${LOCALBASE}
NORMALIZ_LIB_DEPENDS=	libnormaliz.so:math/libnormaliz
NORMALIZ_CONFIGURE_OFF=	--without-libnormaliz

OPENMP_USES=	compiler:openmp
OPENMP_CONFIGURE_OFF=	--without-openmp

PPL_CONFIGURE_ON=	--with-ppl=${LOCALBASE}
PPL_LIB_DEPENDS=	libppl.so:devel/ppl
PPL_CONFIGURE_OFF=	--without-ppl

SCIP_CONFIGURE_ON=	--with-scip=${LOCALBASE}
SCIP_LIB_DEPENDS=	libscip.so:math/SCIP
SCIP_CONFIGURE_OFF=	--without-scip

SINGULAR_CONFIGURE_ON=	--with-singular=${LOCALBASE}
SINGULAR_LIB_DEPENDS=	libSingular.so:math/singular \
			libomalloc.so:math/singular \
			libpolys.so:math/singular \
			libsingular_resources.so:math/singular
SINGULAR_CONFIGURE_OFF=	--without-singular

SOPLEX_CONFIGURE_ON=	--with-soplex=${LOCALBASE}
SOPLEX_LIB_DEPENDS=	libsoplex-pic.so:math/SoPlex
SOPLEX_CONFIGURE_OFF=	--without-soplex

# The port uses the minimal distribution tarball without bundled libraries.
# Set WRKSRC accordingly.
WRKSRC=		${WRKDIR}/${PORTNAME}-${DISTVERSION}

.include <bsd.port.options.mk>

# Deal with site specific installation directory
# polymake installs a perlxs module which depends on the perl configuration
PERL_ARCHNAME=	${:!${PERL} -E 'use Config; print "\$Config::Config{archname}";'!}
PLIST_FILES+=	libexec/polymake/perlx/${PERL_VERSION}/${PERL_ARCHNAME}/auto/Polymake/Ext/Ext.so

# Keep track of the major version
DISTVERSION_MAJ=	${:!expr ${DISTVERSION} : '\([0-9]*\).*'!}

.if ${PORT_OPTIONS:MTESTS}
USE_PERL5+=	test
.endif

post-install:
	${RLN} ${STAGEDIR}${PREFIX}/lib/libpolymake.so.${DISTVERSION} \
		${STAGEDIR}${PREFIX}/lib/libpolymake.so.${DISTVERSION_MAJ}
	${RLN} ${STAGEDIR}${PREFIX}/lib/libpolymake.so.${DISTVERSION} \
		${STAGEDIR}${PREFIX}/lib/libpolymake.so

	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libpolymake.so.${DISTVERSION}

.for _lp in libpolymake-apps libpolymake-apps-rt
	${RLN} ${STAGEDIR}${PREFIX}/lib/${_lp}.so.${DISTVERSION} \
		${STAGEDIR}${PREFIX}/lib/${_lp}.so.${DISTVERSION_MAJ}
	${RLN} ${STAGEDIR}${PREFIX}/lib/${_lp}.so.${DISTVERSION} \
		${STAGEDIR}${PREFIX}/lib/${_lp}.so

	${RLN} ${STAGEDIR}${PREFIX}/lib/${_lp}.so.${DISTVERSION} \
		${STAGEDIR}${PREFIX}/libexec/polymake/lib/${_lp}.so.${DISTVERSION_MAJ}
	${RLN} ${STAGEDIR}${PREFIX}/lib/${_lp}.so.${DISTVERSION} \
		${STAGEDIR}${PREFIX}/libexec/polymake/lib/${_lp}.so

	${RLN} ${STAGEDIR}${PREFIX}/libexec/polymake/lib/${_lp}.so.${DISTVERSION} \
		${STAGEDIR}${PREFIX}/libexec/polymake/lib/${_lp}.so.${DISTVERSION_MAJ}
	${RLN} ${STAGEDIR}${PREFIX}/libexec/polymake/lib/${_lp}.so.${DISTVERSION} \
		${STAGEDIR}${PREFIX}/libexec/polymake/lib/${_lp}.so
# strip the libraries
	${STRIP_CMD} ${STAGEDIR}${PREFIX}/libexec/polymake/lib/${_lp}.so.${DISTVERSION}
.endfor

	${STRIP_CMD} ${STAGEDIR}${PREFIX}/libexec/polymake/perlx/${PERL_VERSION}/${PERL_ARCHNAME}/auto/Polymake/Ext/Ext.so

.for l in common fan fulton graph group matroid polytope topaz tropical
	${STRIP_CMD} ${STAGEDIR}${PREFIX}/libexec/polymake/lib/${l}.so
.endfor

# libexec/polymake/lib/ideal.so is installed iff SINGULAR=on
.if ${PORT_OPTIONS:MSINGULAR}
	${STRIP_CMD} ${STAGEDIR}${PREFIX}/libexec/polymake/lib/ideal.so
.endif

.for lp in libpolymake-apps libpolymake-apps-rt
	${STRIP_CMD} ${STAGEDIR}${PREFIX}/libexec/polymake/lib/${lp}.so.${DISTVERSION}
.endfor

post-install-TESTS-on: test

# Set HOME=${WRKDIR} to prevent polymake writing its .polymake directory outside
# WRKDIR.
test:
	(cd ${WRKSRC} && (HOME=${WRKDIR} perl/polymake --script run_testcases))

.include <bsd.port.mk>

Added Link Here

(-)b/math/polymake/distinfo (+3 lines)
1	TIMESTAMP = 1622150271
2	SHA256 (polymake-4.4-minimal.tar.bz2) = da7179176c739c8efba65d93b25af103c1cba70e1f9b35673ce33c37790ec091
3	SIZE (polymake-4.4-minimal.tar.bz2) = 5620609




--- Makefile.orig	2021-05-18 08:50:05 UTC
+++ Makefile
@@ -32,14 +32,14 @@ ifdef $(DESTDIR)
 endif
 
 all install :
-	${NINJA} -C $(_BuildDir) $@
+	${NINJA} -v -C $(_BuildDir) $@
 
 test : all
 	perl/polymake --script run_testcases
 
 clean :
-	${NINJA} -C $(_BuildDir) clean.all
-	${NINJA} -C $(_BuildDir) -t clean all
+	${NINJA} -v -C $(_BuildDir) clean.all
+	${NINJA} -v -C $(_BuildDir) -t clean all
 	rm -rf ${BuildRoot}/doc
 
 distclean:

Added Link Here

(-)b/math/polymake/files/patch-support_install.pl (+11 lines)
1	--- support/install.pl.orig 2021-05-18 08:50:05 UTC
2	+++ support/install.pl
3	@@ -316,7 +316,7 @@ sub rel_symlink {
4	my $rel_link = $link;
5	my $common_prefix = 1;
6	while ($rel_link =~ s{^(/[^/]+)(?=/)}{}) {
7	- if ($common_prefix && substr($target, 0, length($1)) eq $1) {
8	+ if ($common_prefix && substr($target, 0, length($1)+1) eq "$1/") {
9	$target = substr($target, length($1));
10	} else {
11	$common_prefix = 0;

Added Link Here

(-)b/math/polymake/pkg-descr (+8 lines)
1	polymake is open source software for research in polyhedral geometry. It deals
2	with polytopes, polyhedra and fans as well as simplicial complexes, matroids,
3	graphs, tropical hypersurfaces, and other objects.
4
5	polymake provides an interactive command line interface with an extensive help
6	system as well as a C++ library interface.
7
8	WWW: https://www.polymake.org




bin/polymake
bin/polymake-config
include/polymake/AccurateFloat.h
include/polymake/AnyString.h
include/polymake/ApproximateSet.h
include/polymake/Array.h
include/polymake/Bitset.h
include/polymake/CascadedContainer.h
include/polymake/ContainerChain.h
include/polymake/ContainerUnion.h
include/polymake/EmbeddedList.h
include/polymake/EquivalenceRelation.h
include/polymake/FaceMap.h
include/polymake/FacetList.h
include/polymake/Fibonacci.h
include/polymake/FlintPolynomial.h
include/polymake/GF2.h
include/polymake/GenericGraph.h
include/polymake/GenericIO.h
include/polymake/GenericIncidenceMatrix.h
include/polymake/GenericMatrix.h
include/polymake/GenericSet.h
include/polymake/GenericStruct.h
include/polymake/GenericVector.h
include/polymake/Graph.h
include/polymake/Heap.h
include/polymake/IncidenceMatrix.h
include/polymake/IndexedSubgraph.h
include/polymake/IndexedSubset.h
include/polymake/Integer.h
include/polymake/ListMatrix.h
include/polymake/Main.h
include/polymake/Map.h
include/polymake/Matrix.h
include/polymake/MultiDimCounter.h
include/polymake/Plucker.h
include/polymake/Polynomial.h
include/polymake/PolynomialImpl.h
include/polymake/PolynomialVarNames.h
include/polymake/PowerSet.h
include/polymake/PuiseuxFraction.h
include/polymake/QuadraticExtension.h
include/polymake/RandomGenerators.h
include/polymake/RandomPoints.h
include/polymake/RandomSubset.h
include/polymake/Rational.h
include/polymake/RationalFunction.h
include/polymake/ReverseSearch.h
include/polymake/SelectedSubset.h
include/polymake/Set.h
include/polymake/Smith_normal_form.h
include/polymake/SparseMatrix.h
include/polymake/SparseVector.h
include/polymake/TransformedContainer.h
include/polymake/TropicalNumber.h
include/polymake/Vector.h
include/polymake/client.h
include/polymake/color.h
include/polymake/common/FlintSNF.h
include/polymake/common/TOmath_decl.h
include/polymake/common/bounding_box.h
include/polymake/common/factorization.h
include/polymake/common/find_matrix_row_permutation.h
include/polymake/common/hadamard_product.h
include/polymake/common/incidence_tools.h
include/polymake/common/labels.h
include/polymake/common/lattice_tools.h
include/polymake/common/print_constraints.h
include/polymake/external/Miniball/Miniball.hpp
include/polymake/external/TOSimplex/TOExMipSol.h
include/polymake/external/TOSimplex/TORationalInf.h
include/polymake/external/TOSimplex/TOSimplex.h
include/polymake/external/TOSimplex/TOmath.h
include/polymake/fan/all_cones_symmetry.h
include/polymake/fan/compactification.h
include/polymake/fan/face_lattice_tools.h
include/polymake/fan/hasse_diagram.h
include/polymake/fan/intersection.h
include/polymake/fan/next/compactification.h
include/polymake/fan/reverse_search_chamber_decomposition.h
include/polymake/fan/stacky_fan.h
include/polymake/fan/tight_span.h
include/polymake/graph/BasicLatticeTypes.h
include/polymake/graph/Closure.h
include/polymake/graph/Decoration.h
include/polymake/graph/DijkstraShortestPath.h
include/polymake/graph/DijkstraShortestPathBase.h
include/polymake/graph/DijkstraShortestPathWithScalarWeights.h
include/polymake/graph/DijkstraShortestPathWithSiblings.h
include/polymake/graph/DoublyConnectedEdgeList.h
include/polymake/graph/GraphIso.h
include/polymake/graph/Lattice.h
include/polymake/graph/LatticePermutation.h
include/polymake/graph/LatticeTools.h
include/polymake/graph/ShrinkingLattice.h
include/polymake/graph/SpringEmbedder.h
include/polymake/graph/all_spanningtrees.h
include/polymake/graph/arc_linking.h
include/polymake/graph/biconnected.h
include/polymake/graph/bipartite.h
include/polymake/graph/bipartite.tcc
include/polymake/graph/compare.h
include/polymake/graph/connected.h
include/polymake/graph/diameter.h
include/polymake/graph/graph_iterators.h
include/polymake/graph/hungarian_method.h
include/polymake/graph/incidence_matrix.h
include/polymake/graph/lattice_builder.h
include/polymake/graph/lattice_migration.h
include/polymake/graph/line_graph.h
include/polymake/graph/matchings.h
include/polymake/graph/max_cliques.h
include/polymake/graph/max_cliques.tcc
include/polymake/graph/maximal_chains.h
include/polymake/graph/next/Decoration.h
include/polymake/graph/poset_tools.h
include/polymake/graph/strong_connected.h
include/polymake/group/action.h
include/polymake/group/group_tools.h
include/polymake/group/induced_action.h
include/polymake/group/isotypic_components.h
include/polymake/group/named_groups.h
include/polymake/group/next/switch_table.h
include/polymake/group/orbit.h
include/polymake/group/permlib.h
include/polymake/group/permlib_helpers.h
include/polymake/group/permlib_tools.h
include/polymake/group/quotiented_representation.h
include/polymake/group/representations.h
include/polymake/group/sparse_isotypic_components.h
include/polymake/group/switch_table.h
include/polymake/hash_map
include/polymake/hash_set
%%SINGULAR%%include/polymake/ideal/internal/singularConvertTypes.h
%%SINGULAR%%include/polymake/ideal/internal/singularInclude.h
%%SINGULAR%%include/polymake/ideal/internal/singularRingManager.h
%%SINGULAR%%include/polymake/ideal/internal/singularTermOrderData.h
%%SINGULAR%%include/polymake/ideal/internal/singularTermOrderMap.h
%%SINGULAR%%include/polymake/ideal/internal/singularUtils.h
%%SINGULAR%%include/polymake/ideal/next/singularIdeal.h
%%SINGULAR%%include/polymake/ideal/singularIdeal.h
%%SINGULAR%%include/polymake/ideal/singularInit.h
include/polymake/integer_linalg.h
include/polymake/internal/AVL.h
include/polymake/internal/Array.h
include/polymake/internal/CharBuffer.h
include/polymake/internal/CombArray.h
include/polymake/internal/Incidence_and_SparseMatrix.h
include/polymake/internal/PlainParser.h
include/polymake/internal/SeriesRaw.h
include/polymake/internal/Wary.h
include/polymake/internal/alias.h
include/polymake/internal/assoc.h
include/polymake/internal/chunk_allocator.h
include/polymake/internal/comparators.h
include/polymake/internal/comparators_basic_defs.h
include/polymake/internal/comparators_ops.h
include/polymake/internal/converters.h
include/polymake/internal/converters_basic_defs.h
include/polymake/internal/dense_linalg.h
include/polymake/internal/extend_algo.h
include/polymake/internal/gmpxx_traits.h
include/polymake/internal/hash_iterators.h
include/polymake/internal/iterator_filters.h
include/polymake/internal/iterator_zipper.h
include/polymake/internal/iterators.h
include/polymake/internal/linalg_exceptions.h
include/polymake/internal/matrix_methods.h
include/polymake/internal/matrix_rows_cols.h
include/polymake/internal/modified_containers.h
include/polymake/internal/nothing.h
include/polymake/internal/operations.h
include/polymake/internal/operations_basic_defs.h
include/polymake/internal/pool_allocator.h
include/polymake/internal/shared_object.h
include/polymake/internal/singular_containers.h
include/polymake/internal/sparse.h
include/polymake/internal/sparse2d.h
include/polymake/internal/sparse2d_ruler.h
include/polymake/internal/sparse_linalg.h
include/polymake/internal/streambuf_ext.h
include/polymake/internal/tree_containers.h
include/polymake/internal/tree_iterators.h
include/polymake/internal/type_manip.h
include/polymake/internal/type_union.h
include/polymake/linalg.h
include/polymake/list
include/polymake/map
include/polymake/matrix_linalg.h
include/polymake/matroid/bases_from_lof.h
include/polymake/matroid/check_axioms.h
include/polymake/matroid/check_valuated_axioms.h
include/polymake/matroid/deletion_contraction.h
include/polymake/matroid/modular_cut.h
include/polymake/matroid/revlex_bases.h
include/polymake/matroid/util.h
include/polymake/meta_function.h
include/polymake/meta_list.h
include/polymake/next/AccurateFloat.h
include/polymake/next/ApproximateSet.h
include/polymake/next/Array.h
include/polymake/next/Bitset.h
include/polymake/next/FacetList.h
include/polymake/next/GF2.h
include/polymake/next/GenericStruct.h
include/polymake/next/Graph.h
include/polymake/next/IncidenceMatrix.h
include/polymake/next/Integer.h
include/polymake/next/Map.h
include/polymake/next/Matrix.h
include/polymake/next/Plucker.h
include/polymake/next/Polynomial.h
include/polymake/next/PuiseuxFraction.h
include/polymake/next/QuadraticExtension.h
include/polymake/next/Rational.h
include/polymake/next/RationalFunction.h
include/polymake/next/Set.h
include/polymake/next/Smith_normal_form.h
include/polymake/next/SparseMatrix.h
include/polymake/next/SparseVector.h
include/polymake/next/TropicalNumber.h
include/polymake/next/Vector.h
include/polymake/next/color.h
include/polymake/next/hash_map
include/polymake/next/hash_set
include/polymake/next/integer_linalg.h
include/polymake/next/linalg.h
include/polymake/next/list
include/polymake/next/numerical_functions.h
include/polymake/node_edge_incidences.h
include/polymake/numerical_functions.h
include/polymake/optional
include/polymake/pair.h
include/polymake/perl/BigObject.h
include/polymake/perl/Value.h
include/polymake/perl/assoc.h
include/polymake/perl/calls.h
include/polymake/perl/constants.h
include/polymake/perl/macros.h
include/polymake/perl/types.h
include/polymake/perl/wrappers.h
include/polymake/permutations.h
include/polymake/polytope/CubeFacets.h
include/polymake/polytope/beneath_beyond.h
include/polymake/polytope/beneath_beyond_impl.h
include/polymake/polytope/bisector.h
include/polymake/polytope/canonicalize.h
include/polymake/polytope/cayley_embedding.h
include/polymake/polytope/cdd_interface.h
include/polymake/polytope/cdd_interface_impl.h
include/polymake/polytope/cocircuit_datacache.h
include/polymake/polytope/cocircuit_equations.h
include/polymake/polytope/compress_incidence.h
include/polymake/polytope/contains.h
include/polymake/polytope/convex_hull.h
include/polymake/polytope/cube_group.h
include/polymake/polytope/face_lattice_tools.h
include/polymake/polytope/gale_tools.h
include/polymake/polytope/generic_convex_hull_client.h
include/polymake/polytope/generic_lp_client.h
include/polymake/polytope/generic_milp_client.h
include/polymake/polytope/h_vector.h
include/polymake/polytope/hasse_diagram.h
include/polymake/polytope/hypersimplex.h
include/polymake/polytope/inner_point.h
include/polymake/polytope/is_regular.h
%%LRS%%include/polymake/polytope/lrs_interface.h
include/polymake/polytope/minkowski_sum_fukuda.h
%%NORMALIZ%%include/polymake/polytope/normaliz_interface.h
include/polymake/polytope/optimal_contains.h
include/polymake/polytope/poly2lp.h
%%PPL%%include/polymake/polytope/ppl_interface.h
%%PPL%%include/polymake/polytope/ppl_interface_impl.h
include/polymake/polytope/projection.h
include/polymake/polytope/quotient_space_tools.h
include/polymake/polytope/representative_simplices.h
include/polymake/polytope/schlegel_common.h
include/polymake/polytope/separating_hyperplane.h
include/polymake/polytope/simple_roots.h
include/polymake/polytope/simplex_tools.h
include/polymake/polytope/solve_LP.h
include/polymake/polytope/solve_MILP.h
%%SOPLEX%%include/polymake/polytope/soplex_interface.h
include/polymake/polytope/symmetrized_cocircuit_equations.h
include/polymake/polytope/symmetrized_cocircuit_equations_0.h
include/polymake/polytope/to_interface.h
include/polymake/polytope/transform.h
include/polymake/set
include/polymake/socketstream.h
include/polymake/topaz/1D_tools.tcc
include/polymake/topaz/2D_tools.tcc
include/polymake/topaz/BistellarComplex.h
include/polymake/topaz/ChainComplex.h
include/polymake/topaz/CoveringTriangulationVisitor.h
include/polymake/topaz/DomeVolumeVisitor.h
include/polymake/topaz/Filtration.h
include/polymake/topaz/FiniteFields.h
include/polymake/topaz/FlipVisitor.h
include/polymake/topaz/HomologyComplex.h
include/polymake/topaz/HomologyComplexFlint.h
include/polymake/topaz/IntersectionForm.h
include/polymake/topaz/SimplicialComplex_as_FaceMap.h
include/polymake/topaz/barycentric_subdivision.h
include/polymake/topaz/boundary_tools.h
include/polymake/topaz/complex_tools.h
include/polymake/topaz/complex_tools.tcc
include/polymake/topaz/connected_sum.h
include/polymake/topaz/connected_sum.tcc
include/polymake/topaz/graph.h
include/polymake/topaz/hasse_diagram.h
include/polymake/topaz/is_sphere_h.h
include/polymake/topaz/jockusch.h
include/polymake/topaz/lawler.h
include/polymake/topaz/merge_vertices.h
include/polymake/topaz/morse_matching_tools.h
include/polymake/topaz/multi_associahedron_sphere.h
include/polymake/topaz/next/ChainComplex.h
include/polymake/topaz/next/Filtration.h
include/polymake/topaz/next/HomologyComplex.h
include/polymake/topaz/next/IntersectionForm.h
include/polymake/topaz/random_discrete_morse.h
include/polymake/topaz/subcomplex_tools.tcc
include/polymake/topaz/sum_triangulation_tools.h
include/polymake/totally_unimodular.h
include/polymake/tropical/arithmetic.h
include/polymake/tropical/canonicalize.h
include/polymake/tropical/cartesian_product.h
include/polymake/tropical/codim_one_with_locality.h
include/polymake/tropical/convex_hull_tools.h
include/polymake/tropical/covectors.h
include/polymake/tropical/cyclic_chains.h
include/polymake/tropical/divisor.h
include/polymake/tropical/double_description.h
include/polymake/tropical/dual_addition_version.h
include/polymake/tropical/homogeneous_convex_hull.h
include/polymake/tropical/lattice.h
include/polymake/tropical/linear_algebra_tools.h
include/polymake/tropical/lines_in_cubic_data.h
include/polymake/tropical/lines_in_cubic_helper.h
include/polymake/tropical/lines_in_cubic_reachable.h
include/polymake/tropical/localize.h
include/polymake/tropical/make_complex.h
include/polymake/tropical/minimal_interior.h
include/polymake/tropical/misc_tools.h
include/polymake/tropical/moduli_rational.h
include/polymake/tropical/morphism_composition.h
include/polymake/tropical/morphism_special.h
include/polymake/tropical/morphism_thomog.h
include/polymake/tropical/morphism_values.h
include/polymake/tropical/next/covectors.h
include/polymake/tropical/patchwork.h
include/polymake/tropical/polynomial_tools.h
include/polymake/tropical/pruefer.h
include/polymake/tropical/psi_classes.h
include/polymake/tropical/pullback.h
include/polymake/tropical/rational_function.h
include/polymake/tropical/refine.h
include/polymake/tropical/separated_data.h
include/polymake/tropical/skeleton.h
include/polymake/tropical/specialcycles.h
include/polymake/tropical/star.h
include/polymake/tropical/thomog.h
include/polymake/type_utils.h
include/polymake/vector
lib/libpolymake-apps-rt.so
lib/libpolymake-apps-rt.so.4
lib/libpolymake-apps-rt.so.4.4
lib/libpolymake-apps.so
lib/libpolymake-apps.so.4
lib/libpolymake-apps.so.4.4
lib/libpolymake.so
lib/libpolymake.so.4
lib/libpolymake.so.4.4
libexec/polymake/config.ninja
libexec/polymake/lib/common.so
libexec/polymake/lib/fan.so
libexec/polymake/lib/fulton.so
libexec/polymake/lib/graph.so
libexec/polymake/lib/group.so
libexec/polymake/lib/ideal.so
libexec/polymake/lib/libpolymake-apps-rt.so
libexec/polymake/lib/libpolymake-apps-rt.so.4
libexec/polymake/lib/libpolymake-apps-rt.so.4.4
libexec/polymake/lib/libpolymake-apps.so
libexec/polymake/lib/libpolymake-apps.so.4
libexec/polymake/lib/libpolymake-apps.so.4.4
libexec/polymake/lib/matroid.so
libexec/polymake/lib/polytope.so
libexec/polymake/lib/topaz.so
libexec/polymake/lib/tropical.so
@comment libexec/polymake/perlx/%%PERL_VERSION%%/amd64-freebsd-thread-multi/auto/Polymake/Ext/Ext.so
libexec/polymake/shared
%%DATADIR%%/apps/common/perllib/BackgroundViewer.pm
%%DATADIR%%/apps/common/perllib/Geomview.pm
%%DATADIR%%/apps/common/perllib/PmSvg.pm
%%DATADIR%%/apps/common/perllib/PolyDB.pm
%%DATADIR%%/apps/common/perllib/PolyDB/Client.pm
%%DATADIR%%/apps/common/perllib/PolyDB/Collection.pm
%%DATADIR%%/apps/common/perllib/PolyDB/Completion.pm
%%DATADIR%%/apps/common/perllib/PolyDB/Cursor.pm
%%DATADIR%%/apps/common/perllib/PolyDB/JsonIO.pm
%%DATADIR%%/apps/common/perllib/PolyDB/Schema.pm
%%DATADIR%%/apps/common/perllib/Postscript.pm
%%DATADIR%%/apps/common/perllib/Povray.pm
%%DATADIR%%/apps/common/perllib/Sage.pm
%%DATADIR%%/apps/common/perllib/Sketch.pm
%%DATADIR%%/apps/common/perllib/ThreeJS.pm
%%DATADIR%%/apps/common/perllib/TikZ.pm
%%DATADIR%%/apps/common/perllib/Visual.pm
%%DATADIR%%/apps/common/perllib/Visual/Drawing.pm
%%DATADIR%%/apps/common/perllib/Visual/DynamicCoords.pm
%%DATADIR%%/apps/common/perllib/Visual/PointSet.pm
%%DATADIR%%/apps/common/perllib/Visual/Polygon.pm
%%DATADIR%%/apps/common/perllib/Visual/Polygons.pm
%%DATADIR%%/apps/common/perllib/Visual/Transformation.pm
%%DATADIR%%/apps/common/perllib/Visual/Wire.pm
%%DATADIR%%/apps/common/perllib/X3d.pm
%%DATADIR%%/apps/common/rules/algebraic_types
%%DATADIR%%/apps/common/rules/basic_types
%%DATADIR%%/apps/common/rules/db_collection_admin.rules
%%DATADIR%%/apps/common/rules/db_help.rules
%%DATADIR%%/apps/common/rules/db_info.rules
%%DATADIR%%/apps/common/rules/db_insert.rules
%%DATADIR%%/apps/common/rules/db_query.rules
%%DATADIR%%/apps/common/rules/db_templates.rules
%%DATADIR%%/apps/common/rules/db_test.rules
%%DATADIR%%/apps/common/rules/db_user_admin.rules
%%DATADIR%%/apps/common/rules/formatting_filters
%%DATADIR%%/apps/common/rules/functions_help.rules
%%DATADIR%%/apps/common/rules/geomview.rules
%%DATADIR%%/apps/common/rules/global_categories.rules
%%DATADIR%%/apps/common/rules/graph_types
%%DATADIR%%/apps/common/rules/help.rules
%%DATADIR%%/apps/common/rules/jupyter.rules
%%DATADIR%%/apps/common/rules/lattice.rules
%%DATADIR%%/apps/common/rules/main.rules
%%DATADIR%%/apps/common/rules/misc_functions
%%DATADIR%%/apps/common/rules/objects_help.rules
%%DATADIR%%/apps/common/rules/pdfviewer.rules
%%DATADIR%%/apps/common/rules/permutations
%%DATADIR%%/apps/common/rules/polydb.rules
%%DATADIR%%/apps/common/rules/polynomial_types
%%DATADIR%%/apps/common/rules/postscript.rules
%%DATADIR%%/apps/common/rules/povray.rules
%%DATADIR%%/apps/common/rules/property_viewer.rules
%%DATADIR%%/apps/common/rules/sage.rules
%%DATADIR%%/apps/common/rules/schema_functions
%%DATADIR%%/apps/common/rules/set_types
%%DATADIR%%/apps/common/rules/sketch.rules
%%DATADIR%%/apps/common/rules/svg.rules
%%DATADIR%%/apps/common/rules/test.rules
%%DATADIR%%/apps/common/rules/test_filters
%%DATADIR%%/apps/common/rules/threejs.rules
%%DATADIR%%/apps/common/rules/tikz.rules
%%DATADIR%%/apps/common/rules/tropical_parser.rules
%%DATADIR%%/apps/common/rules/visual.rules
%%DATADIR%%/apps/common/rules/webbrowser.rules
%%DATADIR%%/apps/common/rules/x3d.rules
%%DATADIR%%/apps/common/scripts/PropertyViewer.pl
%%DATADIR%%/apps/common/src/bounding_box.cc
%%DATADIR%%/apps/common/src/check_int_limit.cc
%%DATADIR%%/apps/common/src/incidence_tools.cc
%%DATADIR%%/apps/common/src/labels.cc
%%DATADIR%%/apps/common/src/perturb_matrix.cc
%%DATADIR%%/apps/common/src/pluecker.cc
%%DATADIR%%/apps/common/src/print_constraints.cc
%%DATADIR%%/apps/common/src/random_permutation.cc
%%DATADIR%%/apps/common/src/unimodular.cc
%%DATADIR%%/apps/fan/rules/action.rules
%%DATADIR%%/apps/fan/rules/bounded_complex.rules
%%DATADIR%%/apps/fan/rules/bounded_complex_visual_graph.rules
%%DATADIR%%/apps/fan/rules/common.rules
%%DATADIR%%/apps/fan/rules/compactification.rules
%%DATADIR%%/apps/fan/rules/fan_properties.rules
%%DATADIR%%/apps/fan/rules/gfan.rules
%%DATADIR%%/apps/fan/rules/help.rules
%%DATADIR%%/apps/fan/rules/hyperplane_arrangement.rules
%%DATADIR%%/apps/fan/rules/incidence_perm.rules
%%DATADIR%%/apps/fan/rules/initial.rules
%%DATADIR%%/apps/fan/rules/lattice.rules
%%DATADIR%%/apps/fan/rules/main.rules
%%DATADIR%%/apps/fan/rules/planar_net.rules
%%DATADIR%%/apps/fan/rules/polyhedral_complex.rules
%%DATADIR%%/apps/fan/rules/polyhedral_complex_properties.rules
%%DATADIR%%/apps/fan/rules/splitstree.rules
%%DATADIR%%/apps/fan/rules/stacky_fan.rules
%%DATADIR%%/apps/fan/rules/subdivision.rules
%%DATADIR%%/apps/fan/rules/subdivision_properties.rules
%%DATADIR%%/apps/fan/rules/symmetric_fan.rules
%%DATADIR%%/apps/fan/rules/visual.rules
%%DATADIR%%/apps/fan/rules/visual_voronoi.rules
%%DATADIR%%/apps/fan/rules/voronoi.rules
%%DATADIR%%/apps/fan/src/all_cones_symmetry.cc
%%DATADIR%%/apps/fan/src/braid_arrangement.cc
%%DATADIR%%/apps/fan/src/check_fan.cc
%%DATADIR%%/apps/fan/src/common_refinement.cc
%%DATADIR%%/apps/fan/src/compactification.cc
%%DATADIR%%/apps/fan/src/face_fan.cc
%%DATADIR%%/apps/fan/src/facets_rays_conversion.cc
%%DATADIR%%/apps/fan/src/gkz_computation.cc
%%DATADIR%%/apps/fan/src/graph_associahedron_fan.cc
%%DATADIR%%/apps/fan/src/hasse_diagram.cc
%%DATADIR%%/apps/fan/src/hypersimplex_vertex_splits.cc
%%DATADIR%%/apps/fan/src/intersection.cc
%%DATADIR%%/apps/fan/src/k_skeleton.cc
%%DATADIR%%/apps/fan/src/metric_tight_span.cc
%%DATADIR%%/apps/fan/src/mixed_subdivision.cc
%%DATADIR%%/apps/fan/src/nested_sets.cc
%%DATADIR%%/apps/fan/src/normal_fan.cc
%%DATADIR%%/apps/fan/src/planar_net.cc
%%DATADIR%%/apps/fan/src/product.cc
%%DATADIR%%/apps/fan/src/projection.cc
%%DATADIR%%/apps/fan/src/pseudo_regularity.cc
%%DATADIR%%/apps/fan/src/rays_facets_conversion.cc
%%DATADIR%%/apps/fan/src/remove_redundancies.cc
%%DATADIR%%/apps/fan/src/reverse_search_chamber_decomposition.cc
%%DATADIR%%/apps/fan/src/secondary_fan.cc
%%DATADIR%%/apps/fan/src/stacky_fan.cc
%%DATADIR%%/apps/fan/src/stacky_fundamental_domain.cc
%%DATADIR%%/apps/fan/src/tight_span.cc
%%DATADIR%%/apps/fan/src/tiling_quotient.cc
%%DATADIR%%/apps/fan/src/union_of_cones.cc
%%DATADIR%%/apps/fulton/rules/affine_toric_variety.rules
%%DATADIR%%/apps/fulton/rules/cyclic_quotient.rules
%%DATADIR%%/apps/fulton/rules/cyclic_quotient_properties.rules
%%DATADIR%%/apps/fulton/rules/help.rules
%%DATADIR%%/apps/fulton/rules/main.rules
%%DATADIR%%/apps/fulton/rules/standard_constructions.rules
%%DATADIR%%/apps/fulton/rules/toric_divisor.rules
%%DATADIR%%/apps/fulton/rules/toric_divisor_classes.rules
%%DATADIR%%/apps/fulton/rules/toric_divisor_properties.rules
%%DATADIR%%/apps/fulton/rules/toric_variety.rules
%%DATADIR%%/apps/fulton/rules/toric_variety_properties.rules
%%DATADIR%%/apps/fulton/src/class_group.cc
%%DATADIR%%/apps/graph/perllib/Graphviz.pm
%%DATADIR%%/apps/graph/perllib/MetapostGraph.pm
%%DATADIR%%/apps/graph/perllib/PostscriptGraph.pm
%%DATADIR%%/apps/graph/perllib/SvgGraph.pm
%%DATADIR%%/apps/graph/perllib/TikZGraph.pm
%%DATADIR%%/apps/graph/perllib/Visual/Graph.pm
%%DATADIR%%/apps/graph/perllib/Visual/Lattice.pm
%%DATADIR%%/apps/graph/rules/common.rules
%%DATADIR%%/apps/graph/rules/compare.rules
%%DATADIR%%/apps/graph/rules/geometric_graph.rules
%%DATADIR%%/apps/graph/rules/graph_properties.rules
%%DATADIR%%/apps/graph/rules/graphviz.rules
%%DATADIR%%/apps/graph/rules/help.rules
%%DATADIR%%/apps/graph/rules/lattice.rules
%%DATADIR%%/apps/graph/rules/main.rules
%%DATADIR%%/apps/graph/rules/metapost.rules
%%DATADIR%%/apps/graph/rules/postscript.rules
%%DATADIR%%/apps/graph/rules/povray.rules
%%DATADIR%%/apps/graph/rules/sketch.rules
%%DATADIR%%/apps/graph/rules/svg.rules
%%DATADIR%%/apps/graph/rules/threejs.rules
%%DATADIR%%/apps/graph/rules/tikz.rules
%%DATADIR%%/apps/graph/rules/upgrade-plain.rules
%%DATADIR%%/apps/graph/rules/visual.rules
%%DATADIR%%/apps/graph/rules/x3d.rules
%%DATADIR%%/apps/graph/src/Decoration.cc
%%DATADIR%%/apps/graph/src/DoublyConnectedEdgeList.cc
%%DATADIR%%/apps/graph/src/Lattice.cc
%%DATADIR%%/apps/graph/src/LatticePermutation.cc
%%DATADIR%%/apps/graph/src/SpringEmbedder.cc
%%DATADIR%%/apps/graph/src/altshuler_det.cc
%%DATADIR%%/apps/graph/src/bipartite_signature.cc
%%DATADIR%%/apps/graph/src/bounded_embedder.cc
%%DATADIR%%/apps/graph/src/clip_graph.cc
%%DATADIR%%/apps/graph/src/complete.cc
%%DATADIR%%/apps/graph/src/complete_bipartite.cc
%%DATADIR%%/apps/graph/src/connectivity.cc
%%DATADIR%%/apps/graph/src/cycle_graph.cc
%%DATADIR%%/apps/graph/src/degree_sequence.cc
%%DATADIR%%/apps/graph/src/edge_lengths.cc
%%DATADIR%%/apps/graph/src/eigenvalues_laplacian.cc
%%DATADIR%%/apps/graph/src/f2_vector.cc
%%DATADIR%%/apps/graph/src/generalized_johnson_graph.cc
%%DATADIR%%/apps/graph/src/greedy_coloring.cc
%%DATADIR%%/apps/graph/src/hd_embedder.cc
%%DATADIR%%/apps/graph/src/homomorphisms.cc
%%DATADIR%%/apps/graph/src/lattice_migration.cc
%%DATADIR%%/apps/graph/src/maximal_chains.cc
%%DATADIR%%/apps/graph/src/neighborhood_graph.cc
%%DATADIR%%/apps/graph/src/petersen.cc
%%DATADIR%%/apps/graph/src/poset_tools.cc
%%DATADIR%%/apps/graph/src/random_graph.cc
%%DATADIR%%/apps/graph/src/shortest_path_dijkstra.cc
%%DATADIR%%/apps/graph/src/spanningtrees.cc
%%DATADIR%%/apps/graph/src/spring_embedder.cc
%%DATADIR%%/apps/graph/src/triangle_free.cc
%%DATADIR%%/apps/group/perllib/permlib_helpers.pl
%%DATADIR%%/apps/group/rules/action.rules
%%DATADIR%%/apps/group/rules/action_functions
%%DATADIR%%/apps/group/rules/action_properties.rules
%%DATADIR%%/apps/group/rules/group.rules
%%DATADIR%%/apps/group/rules/group_helpers.rules
%%DATADIR%%/apps/group/rules/group_properties.rules
%%DATADIR%%/apps/group/rules/help.rules
%%DATADIR%%/apps/group/rules/main.rules
%%DATADIR%%/apps/group/rules/permlib.rules
%%DATADIR%%/apps/group/rules/polytope_group.rules
%%DATADIR%%/apps/group/rules/switch_table.rules
%%DATADIR%%/apps/group/src/col_to_row_action.cc
%%DATADIR%%/apps/group/src/conjugacy_classes.cc
%%DATADIR%%/apps/group/src/group_tools.cc
%%DATADIR%%/apps/group/src/implicit_action.cc
%%DATADIR%%/apps/group/src/induced_action.cc
%%DATADIR%%/apps/group/src/lex_min_representative.cc
%%DATADIR%%/apps/group/src/named_groups.cc
%%DATADIR%%/apps/group/src/orbit.cc
%%DATADIR%%/apps/group/src/orbit_permlib.cc
%%DATADIR%%/apps/group/src/permlib.cc
%%DATADIR%%/apps/group/src/permlib_group_tools.cc
%%DATADIR%%/apps/group/src/representations.cc
%%DATADIR%%/apps/group/src/sparse_isotypic_components.cc
%%DATADIR%%/apps/ideal/rules/grassmann_pluecker.rules
%%DATADIR%%/apps/ideal/rules/help.rules
%%DATADIR%%/apps/ideal/rules/ideal.rules
%%DATADIR%%/apps/ideal/rules/ideal_properties.rules
%%DATADIR%%/apps/ideal/rules/main.rules
%%DATADIR%%/apps/matroid/rules/_4ti2.rules
%%DATADIR%%/apps/matroid/rules/automorphisms.rules
%%DATADIR%%/apps/matroid/rules/dual.rules
%%DATADIR%%/apps/matroid/rules/help.rules
%%DATADIR%%/apps/matroid/rules/main.rules
%%DATADIR%%/apps/matroid/rules/matroid.rules
%%DATADIR%%/apps/matroid/rules/matroid_examples.rules
%%DATADIR%%/apps/matroid/rules/matroid_properties.rules
%%DATADIR%%/apps/matroid/rules/valuatedmatroid_properties.rules
%%DATADIR%%/apps/matroid/src/bases_from_cyclic_flats.cc
%%DATADIR%%/apps/matroid/src/bases_from_lof.cc
%%DATADIR%%/apps/matroid/src/bases_from_matroid_polytope.cc
%%DATADIR%%/apps/matroid/src/bases_from_points.cc
%%DATADIR%%/apps/matroid/src/basic_transformations.cc
%%DATADIR%%/apps/matroid/src/canonical.cc
%%DATADIR%%/apps/matroid/src/check_axioms.cc
%%DATADIR%%/apps/matroid/src/check_valuated_axioms.cc
%%DATADIR%%/apps/matroid/src/circuits_support.cc
%%DATADIR%%/apps/matroid/src/connectivity.cc
%%DATADIR%%/apps/matroid/src/cyclic_flats.cc
%%DATADIR%%/apps/matroid/src/deletion_contraction.cc
%%DATADIR%%/apps/matroid/src/dual.cc
%%DATADIR%%/apps/matroid/src/ginvariant.cc
%%DATADIR%%/apps/matroid/src/invert_bases.cc
%%DATADIR%%/apps/matroid/src/laminar.cc
%%DATADIR%%/apps/matroid/src/lattice_of_flats.cc
%%DATADIR%%/apps/matroid/src/lex_extension.cc
%%DATADIR%%/apps/matroid/src/lift_and_truncation.cc
%%DATADIR%%/apps/matroid/src/loops_coloops.cc
%%DATADIR%%/apps/matroid/src/matroid_from_cyclic_flats.cc
%%DATADIR%%/apps/matroid/src/matroid_from_graph.cc
%%DATADIR%%/apps/matroid/src/matroid_to_tropical_plueckervector.cc
%%DATADIR%%/apps/matroid/src/maximal_transversal.cc
%%DATADIR%%/apps/matroid/src/minimal_base.cc
%%DATADIR%%/apps/matroid/src/nested.cc
%%DATADIR%%/apps/matroid/src/positroid.cc
%%DATADIR%%/apps/matroid/src/projective_plane.cc
%%DATADIR%%/apps/matroid/src/representation.cc
%%DATADIR%%/apps/matroid/src/revlex_basis_encoding.cc
%%DATADIR%%/apps/matroid/src/split_flacets.cc
%%DATADIR%%/apps/matroid/src/sums.cc
%%DATADIR%%/apps/matroid/src/transversal.cc
%%DATADIR%%/apps/matroid/src/trivial_valuation.cc
%%DATADIR%%/apps/matroid/src/tutte_polynomial.cc
%%DATADIR%%/apps/matroid/src/uniform_matroid.cc
%%DATADIR%%/apps/matroid/src/union_intersection.cc
%%DATADIR%%/apps/matroid/src/valuated_bases_and_circuits.cc
%%DATADIR%%/apps/matroid/src/valuated_dual.cc
%%DATADIR%%/apps/polytope/perllib/LPparser.pm
%%DATADIR%%/apps/polytope/perllib/PortaParser.pm
%%DATADIR%%/apps/polytope/perllib/PostscriptGale.pm
%%DATADIR%%/apps/polytope/perllib/SplitsTree.pm
%%DATADIR%%/apps/polytope/perllib/Visual/Gale.pm
%%DATADIR%%/apps/polytope/rules/_4ti2.rules
%%DATADIR%%/apps/polytope/rules/action.rules
%%DATADIR%%/apps/polytope/rules/arbitrary_coords.rules
%%DATADIR%%/apps/polytope/rules/azove.rules
%%DATADIR%%/apps/polytope/rules/common.rules
%%DATADIR%%/apps/polytope/rules/cone_common.rules
%%DATADIR%%/apps/polytope/rules/cone_properties.rules
%%DATADIR%%/apps/polytope/rules/coxeter.rules
%%DATADIR%%/apps/polytope/rules/edge_orientable.rules
%%DATADIR%%/apps/polytope/rules/flag_vector.rules
%%DATADIR%%/apps/polytope/rules/float.rules
%%DATADIR%%/apps/polytope/rules/gale.rules
%%DATADIR%%/apps/polytope/rules/global_categories.rules
%%DATADIR%%/apps/polytope/rules/group.rules
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%%DATADIR%%/resources/jupyter-polymake/jupyter_kernel_polymake/resources/Projector.js
%%DATADIR%%/resources/jupyter-polymake/jupyter_kernel_polymake/resources/SVGRenderer.js
%%DATADIR%%/resources/jupyter-polymake/jupyter_kernel_polymake/resources/TrackballControls.js
%%DATADIR%%/resources/jupyter-polymake/jupyter_kernel_polymake/resources/WebGL.js
%%DATADIR%%/resources/jupyter-polymake/jupyter_kernel_polymake/resources/close.svg
%%DATADIR%%/resources/jupyter-polymake/jupyter_kernel_polymake/resources/kernel.js
%%DATADIR%%/resources/jupyter-polymake/jupyter_kernel_polymake/resources/logo-32x32.png
%%DATADIR%%/resources/jupyter-polymake/jupyter_kernel_polymake/resources/logo-64x64.png
%%DATADIR%%/resources/jupyter-polymake/jupyter_kernel_polymake/resources/menu.svg
%%DATADIR%%/resources/jupyter-polymake/jupyter_kernel_polymake/resources/three.js
%%DATADIR%%/resources/jupyter-polymake/setup.py
%%DATADIR%%/resources/logo/pdf/logo-b.pdf
%%DATADIR%%/resources/logo/pdf/logo-g.pdf
%%DATADIR%%/resources/logo/pdf/logo-m.pdf
%%DATADIR%%/resources/logo/pdf/logo.pdf
%%DATADIR%%/resources/logo/png/logo-32x32.png
%%DATADIR%%/resources/logo/png/logo-64x64.png
%%DATADIR%%/resources/logo/png/logo-b.png
%%DATADIR%%/resources/logo/png/logo-g.png
%%DATADIR%%/resources/logo/png/logo-m.png
%%DATADIR%%/resources/logo/png/logo.png
%%DATADIR%%/resources/polyDB.png
%%DATADIR%%/resources/polymake-in-container.sh
%%DATADIR%%/resources/povray/polymake-scene.pov
%%DATADIR%%/resources/povray/polypov.ini
%%DATADIR%%/resources/schemas/data.json
%%DATADIR%%/resources/schemas/datafile.rng
%%DATADIR%%/resources/schemas/meta-schema-04.json
%%DATADIR%%/resources/schemas/meta-schema-07.json
%%DATADIR%%/resources/template.tex
%%DATADIR%%/resources/threejs/js/images/close.svg
%%DATADIR%%/resources/threejs/js/images/menu.svg
%%DATADIR%%/resources/threejs/js/three.polymake.js
%%DATADIR%%/resources/threejs/trailer_string.js
%%DATADIR%%/scripts/big_object_graph
%%DATADIR%%/scripts/big_object_inventory
%%DATADIR%%/scripts/doxygen
%%DATADIR%%/scripts/help2json
%%DATADIR%%/scripts/jupyter
%%DATADIR%%/scripts/list_suspicious_rules
%%DATADIR%%/scripts/pretty_matrix.pl
%%DATADIR%%/scripts/print_face_lattice
%%DATADIR%%/scripts/run_testcases
%%DATADIR%%/scripts/run_tutorials
%%DATADIR%%/scripts/tarballs
%%DATADIR%%/scripts/test_testcases
%%DATADIR%%/support/configure.pl.template
%%DATADIR%%/support/generate_applib_fake.pl
%%DATADIR%%/support/generate_cpperl_modules.pl
%%DATADIR%%/support/generate_ninja_targets.pl
%%DATADIR%%/support/generate_ninja_targets.pl.template
%%DATADIR%%/support/guarded_compiler.pl
%%DATADIR%%/support/install.pl
%%DATADIR%%/support/install.pl.template
%%DATADIR%%/support/install_utils.pl
%%DATADIR%%/support/rules.ninja
%%DATADIR%%/upgrades/2.10
%%DATADIR%%/upgrades/2.11
%%DATADIR%%/upgrades/2.12
%%DATADIR%%/upgrades/2.13
%%DATADIR%%/upgrades/2.14
%%DATADIR%%/upgrades/3.0
%%DATADIR%%/upgrades/3.1
%%DATADIR%%/upgrades/3.2
%%DATADIR%%/upgrades/3.3
%%DATADIR%%/upgrades/3.5
%%DATADIR%%/upgrades/4.1
%%DATADIR%%/upgrades/4.2
%%DATADIR%%/upgrades/4.3
%%DATADIR%%/upgrades/4.4
%%DATADIR%%/upgrades/big_objects-2.10.1
%%DATADIR%%/upgrades/big_objects-2.11.1
%%DATADIR%%/upgrades/big_objects-2.12.1
%%DATADIR%%/upgrades/big_objects-2.13.1
%%DATADIR%%/upgrades/big_objects-2.14.1
%%DATADIR%%/upgrades/big_objects-2.9.10
%%DATADIR%%/upgrades/big_objects-3.0.1
%%DATADIR%%/upgrades/big_objects-3.1.1
%%DATADIR%%/upgrades/big_objects-3.2.1
%%DATADIR%%/upgrades/big_objects-3.4.1
%%DATADIR%%/upgrades/big_objects-4.0.1
%%DATADIR%%/upgrades/big_objects-4.1.1
%%DATADIR%%/upgrades/big_objects-4.2.1
%%DATADIR%%/upgrades/big_objects-4.3.1
%%DATADIR%%/upgrades/big_objects-4.3.3
@dir libexec/polymake/bundled/atint
%%BLISS%%@dir libexec/polymake/bundled/bliss
@dir libexec/polymake/bundled/cdd
@dir libexec/polymake/bundled/flint
%%NORMALIZ%%@dir libexec/polymake/bundled/libnormaliz
%%LRS%%@dir libexec/polymake/bundled/lrs
%%NAUTY%%@dir libexec/polymake/bundled/nauty
%%PPL%%@dir libexec/polymake/bundled/ppl
%%SCIP%%@dir libexec/polymake/bundled/scip
%%SINGULAR%%@dir libexec/polymake/bundled/singular
%%SOPLEX%%@dir libexec/polymake/bundled/soplex

Return to bug 256861

Added Link Here

(-)b/math/polymake/Makefile (+206 lines)
1	# Created by: Philipp Ost <bsd@philippost.de>
2
3	PORTNAME= polymake
4	DISTVERSION= 4.4
5	CATEGORIES= math
6	MASTER_SITES= https://polymake.org/lib/exe/fetch.php/download/
7	DISTNAME= ${PORTNAME}-${DISTVERSION}-minimal
8
9	MAINTAINER= bsd@philippost.de
10	COMMENT= Software package for research in polyhedral geometry
11
12	LICENSE= GPLv2+
13	LICENSE_FILE= ${WRKSRC}/COPYING
14
15	BUILD_DEPENDS= boost-libs>=1.72:devel/boost-libs \
16	ninja:devel/ninja \
17	permlib>=0.2.9:math/permlib \
18	p5-XML-SAX>=1.02:textproc/p5-XML-SAX \
19	p5-XML-Writer>=0.900:textproc/p5-XML-Writer \
20	p5-Term-ReadLine-Gnu>=1.37:devel/p5-Term-ReadLine-Gnu \
21	p5-Term-ReadKey>=2.38:devel/p5-Term-ReadKey \
22	p5-JSON>=2.97:converters/p5-JSON
23	LIB_DEPENDS= libcddgmp.so:math/cddlib \
24	libflint.so:math/flint2 \
25	libgmpxx.so:math/gmp \
26	libmpfr.so:math/mpfr
27	RUN_DEPENDS= bash>=5.0:shells/bash \
28	boost-libs>=1.72:devel/boost-libs \
29	permlib>=0.2.9:math/permlib \
30	p5-XML-SAX>=1.02:textproc/p5-XML-SAX \
31	p5-XML-Writer>=0.900:textproc/p5-XML-Writer \
32	p5-Term-ReadLine-Gnu>=1.37:devel/p5-Term-ReadLine-Gnu \
33	p5-Term-ReadKey>=2.38:devel/p5-Term-ReadKey \
34	p5-JSON>=2.97:converters/p5-JSON
35
36	USES= compiler:c++14-lang gmake gnome perl5 readline shebangfix \
37	tar:bzip2
38	USE_GNOME= libxml2 libxslt
39	USE_LDCONFIG= ${PREFIX}/lib
40	USE_PERL5= build run
41	SHEBANG_FILES= resources/host-agent/bin/env resources/host-agent/bin/polymake
42	SHEBANG_GLOB= .pl .sh
43
44	# polymake's configure script expects options to be disabled by --without-option
45	# and most options to be enabled by --with-option=DIR
46	HAS_CONFIGURE= yes
47	CONFIGURE_ARGS= --prefix=${PREFIX} \
48	--exec-prefix=${PREFIX} \
49	--bindir=${PREFIX}/bin \
50	--includedir=${PREFIX}/include \
51	--libdir=${PREFIX}/lib \
52	--libexecdir=${PREFIX}/libexec/polymake \
53	--datadir=${PREFIX}/share/polymake \
54	--docdir=${DOCSDIR} \
55	--without-prereq \
56	--with-libcxx \
57	--with-cdd=${LOCALBASE} \
58	--with-flint=${LOCALBASE} \
59	--with-permlib=${LOCALBASE}/lib \
60	--without-java \
61	--without-javaview \
62	--without-sympol
63	CONFIGURE_LOG= build/bundled.log
64
65	# Optional features; SoPlex defaults to off due to licencsing and SCIP defaults
66	# to off due to a dependency on libsoplex.so.
67	OPTIONS_DEFINE= LRS NATIVE NORMALIZ OPENMP PPL SCIP SINGULAR SOPLEX TESTS
68	OPTIONS_DEFAULT= BLISS LRS NORMALIZ OPENMP PPL SINGULAR
69	# Exlude lrslib on i386 and powerpc because it is marked BROKEN for those
70	# architectures
71	OPTIONS_EXCLUDE_i386= LRS
72	OPTIONS_EXCLUDE_powerpc= LRS
73	OPTIONS_SUB= yes
74
75	# polymake needs either math/bliss or math/nauty to compute graph automorphism
76	# groups
77	OPTIONS_SINGLE= GRAPH
78	OPTIONS_SINGLE_GRAPH= BLISS NAUTY
79
80	BLISS_DESC= Compute graph automorphism groups using bliss
81	GRAPH_DESC= Graph automorphism groups
82	LRS_DESC= Convex hull computation and vertex enumeration
83	NATIVE_DESC= Build with native optimizations (-march=native)
84	NAUTY_DESC= Compute graph automorphism groups using nauty
85	NORMALIZ_DESC= Computations in affine monoids and lattice polytopes
86	PPL_DESC= Manipulation of convex polyhedra
87	SCIP_DESC= Solver for mixed integer linear and nonlinear problems
88	SINGULAR_DESC= Computation of Groebner bases
89	SOPLEX_DESC= Solver for linear programming problems
90	TESTS_DESC= Run bundled self tests after build
91
92	BLISS_CONFIGURE_ON= --with-bliss=${LOCALBASE}
93	BLISS_BUILD_DEPENDS= bliss-graph-tool>=0.73:math/bliss
94	BLISS_RUN_DEPENDS= bliss-graph-tool>=0.73:math/bliss
95	BLISS_CONFIGURE_OFF= --without-bliss
96
97	NAUTY_WRKSRC= ${:!${MAKE} -V WRKSRC -C ${.CURDIR:H:H}/math/nauty!}
98	NAUTY_CONFIGURE_ON= --with-nauty-src=${NAUTY_WRKSRC}
99	NAUTY_BUILD_DEPENDS= ${NONEXISTENT}:math/nauty:patch
100	NAUTY_RUN_DEPENDS= nauty>=27:math/nauty
101	# Do not explicitly disable nauty. polymake's configure script currently fails
102	# if a reconfiguration is triggered. However, it is aware that bliss and nauty
103	# are mutually exclusive and disables nauty if BLISS=on.
104	#NAUTY_CONFIGURE_OFF= --without-nauty
105
106	LRS_CONFIGURE_ON= --with-lrs=${LOCALBASE} \
107	--with-lrs-include=${LOCALBASE}/include/lrslib
108	LRS_LIB_DEPENDS= liblrs.so:math/lrslib
109	LRS_CONFIGURE_OFF= --without-lrs
110
111	NATIVE_CONFIGURE_OFF= --without-native
112
113	NORMALIZ_CONFIGURE_ON= --with-libnormaliz=${LOCALBASE}
114	NORMALIZ_LIB_DEPENDS= libnormaliz.so:math/libnormaliz
115	NORMALIZ_CONFIGURE_OFF= --without-libnormaliz
116
117	OPENMP_USES= compiler:openmp
118	OPENMP_CONFIGURE_OFF= --without-openmp
119
120	PPL_CONFIGURE_ON= --with-ppl=${LOCALBASE}
121	PPL_LIB_DEPENDS= libppl.so:devel/ppl
122	PPL_CONFIGURE_OFF= --without-ppl
123
124	SCIP_CONFIGURE_ON= --with-scip=${LOCALBASE}
125	SCIP_LIB_DEPENDS= libscip.so:math/SCIP
126	SCIP_CONFIGURE_OFF= --without-scip
127
128	SINGULAR_CONFIGURE_ON= --with-singular=${LOCALBASE}
129	SINGULAR_LIB_DEPENDS= libSingular.so:math/singular \
130	libomalloc.so:math/singular \
131	libpolys.so:math/singular \
132	libsingular_resources.so:math/singular
133	SINGULAR_CONFIGURE_OFF= --without-singular
134
135	SOPLEX_CONFIGURE_ON= --with-soplex=${LOCALBASE}
136	SOPLEX_LIB_DEPENDS= libsoplex-pic.so:math/SoPlex
137	SOPLEX_CONFIGURE_OFF= --without-soplex
138
139	# The port uses the minimal distribution tarball without bundled libraries.
140	# Set WRKSRC accordingly.
141	WRKSRC= ${WRKDIR}/${PORTNAME}-${DISTVERSION}
142
143	.include <bsd.port.options.mk>
144
145	# Deal with site specific installation directory
146	# polymake installs a perlxs module which depends on the perl configuration
147	PERL_ARCHNAME= ${:!${PERL} -E 'use Config; print "\$Config::Config{archname}";'!}
148	PLIST_FILES+= libexec/polymake/perlx/${PERL_VERSION}/${PERL_ARCHNAME}/auto/Polymake/Ext/Ext.so
149
150	# Keep track of the major version
151	DISTVERSION_MAJ= ${:!expr ${DISTVERSION} : '\([0-9]\).'!}
152
153	.if ${PORT_OPTIONS:MTESTS}
154	USE_PERL5+= test
155	.endif
156
157	post-install:
158	${RLN} ${STAGEDIR}${PREFIX}/lib/libpolymake.so.${DISTVERSION} \
159	${STAGEDIR}${PREFIX}/lib/libpolymake.so.${DISTVERSION_MAJ}
160	${RLN} ${STAGEDIR}${PREFIX}/lib/libpolymake.so.${DISTVERSION} \
161	${STAGEDIR}${PREFIX}/lib/libpolymake.so
162
163	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libpolymake.so.${DISTVERSION}
164
165	.for _lp in libpolymake-apps libpolymake-apps-rt
166	${RLN} ${STAGEDIR}${PREFIX}/lib/${_lp}.so.${DISTVERSION} \
167	${STAGEDIR}${PREFIX}/lib/${_lp}.so.${DISTVERSION_MAJ}
168	${RLN} ${STAGEDIR}${PREFIX}/lib/${_lp}.so.${DISTVERSION} \
169	${STAGEDIR}${PREFIX}/lib/${_lp}.so
170
171	${RLN} ${STAGEDIR}${PREFIX}/lib/${_lp}.so.${DISTVERSION} \
172	${STAGEDIR}${PREFIX}/libexec/polymake/lib/${_lp}.so.${DISTVERSION_MAJ}
173	${RLN} ${STAGEDIR}${PREFIX}/lib/${_lp}.so.${DISTVERSION} \
174	${STAGEDIR}${PREFIX}/libexec/polymake/lib/${_lp}.so
175
176	${RLN} ${STAGEDIR}${PREFIX}/libexec/polymake/lib/${_lp}.so.${DISTVERSION} \
177	${STAGEDIR}${PREFIX}/libexec/polymake/lib/${_lp}.so.${DISTVERSION_MAJ}
178	${RLN} ${STAGEDIR}${PREFIX}/libexec/polymake/lib/${_lp}.so.${DISTVERSION} \
179	${STAGEDIR}${PREFIX}/libexec/polymake/lib/${_lp}.so
180	# strip the libraries
181	${STRIP_CMD} ${STAGEDIR}${PREFIX}/libexec/polymake/lib/${_lp}.so.${DISTVERSION}
182	.endfor
183
184	${STRIP_CMD} ${STAGEDIR}${PREFIX}/libexec/polymake/perlx/${PERL_VERSION}/${PERL_ARCHNAME}/auto/Polymake/Ext/Ext.so
185
186	.for l in common fan fulton graph group matroid polytope topaz tropical
187	${STRIP_CMD} ${STAGEDIR}${PREFIX}/libexec/polymake/lib/${l}.so
188	.endfor
189
190	# libexec/polymake/lib/ideal.so is installed iff SINGULAR=on
191	.if ${PORT_OPTIONS:MSINGULAR}
192	${STRIP_CMD} ${STAGEDIR}${PREFIX}/libexec/polymake/lib/ideal.so
193	.endif
194
195	.for lp in libpolymake-apps libpolymake-apps-rt
196	${STRIP_CMD} ${STAGEDIR}${PREFIX}/libexec/polymake/lib/${lp}.so.${DISTVERSION}
197	.endfor
198
199	post-install-TESTS-on: test
200
201	# Set HOME=${WRKDIR} to prevent polymake writing its .polymake directory outside
202	# WRKDIR.
203	test:
204	(cd ${WRKSRC} && (HOME=${WRKDIR} perl/polymake --script run_testcases))
205
206	.include <bsd.port.mk>

Added Link Here

(-)b/math/polymake/files/patch-Makefile (+20 lines)
1	--- Makefile.orig 2021-05-18 08:50:05 UTC
2	+++ Makefile
3	@@ -32,14 +32,14 @@ ifdef $(DESTDIR)
4	endif
5
6	all install :
7	- ${NINJA} -C $(_BuildDir) $@
8	+ ${NINJA} -v -C $(_BuildDir) $@
9
10	test : all
11	perl/polymake --script run_testcases
12
13	clean :
14	- ${NINJA} -C $(_BuildDir) clean.all
15	- ${NINJA} -C $(_BuildDir) -t clean all
16	+ ${NINJA} -v -C $(_BuildDir) clean.all
17	+ ${NINJA} -v -C $(_BuildDir) -t clean all
18	rm -rf ${BuildRoot}/doc
19
20	distclean: