Attachment #235858 for bug #265105

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and this patch




PORTNAME=	refdb
PORTVERSION=	1.0.3
DISTVERSIONSUFFIX=	-1
PORTREVISION=	11
CATEGORIES=	textproc
MASTER_SITES=	https://sourceforge.net/projects/${PORTNAME}/files/latest/download/

MAINTAINER=	port@freebsd.org
COMMENT=	Bibliographic reference database

LICENSE=	GPLv2+
LICENSE_FILE=	${WRKSRC}/COPYING

BUILD_DEPENDS=	${RUN_DEPENDS} \
		svnversion:devel/subversion

LIB_DEPENDS=	libbtparse.so:textproc/btparse \
		libdbi.so:databases/libdbi \
		libexpat.so:textproc/expat2 \
		libltdl.so:devel/libltdl

RUN_DEPENDS=	fop>=0:textproc/fop \
		libxslt>=0:textproc/libxslt \
		p5-MARC-Record>=0:textproc/p5-MARC-Record \
		p5-MARC-XML>=0:textproc/p5-MARC-XML \
		p5-XML-Parser>=0:textproc/p5-XML-Parser \
		xmlcatmgr>=0:textproc/xmlcatmgr

USES=		autoreconf gettext gmake iconv libtool localbase \
		pathfix perl5 php:web pkgconfig readline shebangfix

USE_RC_SUBR=	refdbd

SHEBANG_FILES=	${WRKSRC}/scripts/*

HAS_CONFIGURE=		yes
CONFIGURE_ARGS+=	--with-classpath-root=${LOCALBASE}/share/java/classes \
			--with-expat-lib=${LOCALBASE}/lib

USES=		gmake iconv readline perl5 libtool pkgconfig pathfix shebangfix
HAS_CONFIGURE=	yes
INSTALL_TARGET=	install-strip
PORTDOCS=	*

CFLAGS+=	-I${LOCALBASE}/include
LIBS+=		-lm

OPTIONS_DEFINE=		DOCS
OPTIONS_DEFAULT=	DOCS PGSQL
		--with-refdb-url=http://localhost/refdb
XMLCATMGR=	${LOCALBASE}/bin/xmlcatmgr

OPTIONS_DEFINE=		DOCS CATALOG
OPTIONS_SINGLE=		DB
OPTIONS_SINGLE_DB=	MYSQL PGSQL SQLITE
OPTIONS_SUB=		yes
DOCS_BUILD_DEPENDS=	docbook-xsl>0:textproc/docbook-xsl \
			dtdparse>0:textproc/dtdparse
DOCS_CONFIGURE_ON=	--without-docbook-xsl-ns \
			--without-tei-xsl \
			--without-tei-xsl-ns
DOCS_CONFIGURE_OFF=	--disable-docs
DOCS_CONFIGURE_WITH=	docbook-xsl=${PREFIX}/share/xsl/docbook
MYSQL_USES=		mysql
MYSQL_CONFIGURE_WITH=	mysql
PGSQL_USES=		pgsql
PGSQL_CONFIGURE_WITH=	pgsql
SQLITE_USES=		sqlite
SQLITE_CONFIGURE_WITH=	sqlite3

.include <bsd.port.options.mk>

.if ${PORT_OPTIONS:MMYSQL}
USES+=		mysql
# If libdbi-drivers has been built without MySQL driver, abort
.if exists(${LOCALBASE}/lib/dbd) && !exists(${LOCALBASE}/lib/dbd/libdbdmysql.so)
IGNORE=		please rebuild databases/libdbi-drivers with MySQL support
.elif !exists(${LOCALBASE}/lib/dbd)
BUILD_DEPENDS+=	${LOCALBASE}/lib/dbd:databases/libdbi-drivers
.endif
CONFIGURE_ARGS+=	--with-db-server=mysql

.elif ${PORT_OPTIONS:MPGSQL}
USES+=	pgsql
# If libdbi-drivers has been built without PostgreSQL driver, abort
.if exists(${LOCALBASE}/lib/dbd) && !exists(${LOCALBASE}/lib/dbd/libdbdpgsql.so)
IGNORE=		please rebuild databases/libdbi-drivers with PostgreSQL support
.elif !exists(${LOCALBASE}/lib/dbd)
BUILD_DEPENDS+=	${LOCALBASE}/lib/dbd:databases/libdbi-drivers
.endif
CONFIGURE_ARGS+=	--with-db-server=pgsql

.elif ${PORT_OPTIONS:MSQLITE}
LIB_DEPENDS+=	libsqlite3.so:databases/sqlite3
# If libdbi-drivers has been built without SQLite driver, abort
.if exists(${LOCALBASE}/lib/dbd) && !exists(${LOCALBASE}/lib/dbd/libdbdsqlite3.so)
IGNORE=		please rebuild databases/libdbi-drivers with SQLite support
.elif !exists(${LOCALBASE}/lib/dbd)
BUILD_DEPENDS+=	${LOCALBASE}/lib/dbd:databases/libdbi-drivers
.endif
CONFIGURE_ARGS+=	--with-db-server=sqlite
.endif

.if ${PORT_OPTIONS:MDOCS}
CONFIGURE_ARGS+=	--with-docbook-xsl=${PREFIX}/share/xsl/docbook \
			--without-docbook-xsl-ns \
			--without-tei-xsl \
			--without-tei-xsl-ns
.else
CONFIGURE_ARGS+=	--disable-docs
.endif

.if ${PORT_OPTIONS:MCATALOG}
RUN_DEPENDS+=	xmlcatmgr:textproc/xmlcatmgr
.endif

post-patch:
	${REINPLACE_CMD} -e 's|$$(PACKAGE)-$$(VERSION)|refdb|g' \
		${WRKSRC}/doc/Makefile.in

post-install:
.if ${PORT_OPTIONS:MCATALOG}
	@[ -f ${STAGEDIR}${PREFIX}/share/sgml/catalog.ports ] || ${TOUCH} ${STAGEDIR}${PREFIX}/share/sgml/catalog.ports
	@${XMLCATMGR} -s -c ${STAGEDIR}${PREFIX}/share/sgml/catalog.ports lookup "${STAGEDIR}${PREFIX}/share/refdb/refdb.cat" > /dev/null || ${XMLCATMGR} -s -c ${STAGEDIR}${PREFIX}/share/sgml/catalog.ports add CATALOG "${STAGEDIR}${PREFIX}/share/refdb/refdb.cat" -- > /dev/null
.endif
	@${ECHO_MSG} "To complete RefDB installation:"
.if ${PORT_OPTIONS:MMYSQL}
	@${ECHO_MSG} ""
	@${ECHO_MSG} "1. To initialise MySQL, run the following command:"
	@${ECHO_MSG} ""
	@${ECHO_MSG} "   mysql -u root -e \"CREATE DATABASE refdb\""
	@${ECHO_MSG} ""
	@${ECHO_MSG} "   Then, for MySQL older than 4.1, run:"
	@${ECHO_MSG} ""
	@${ECHO_MSG} "   mysql -u root refdb < ${PREFIX}/share/refdb/sql/refdb.dump.mysql"
	@${ECHO_MSG} ""
	@${ECHO_MSG} "   For MySQL 4.1 and later, run:"
	@${ECHO_MSG} ""
	@${ECHO_MSG} "   mysql -u root refdb < ${PREFIX}/share/refdb/sql/refdb.dump.mysql41"
	@${ECHO_MSG} ""
.elif ${PORT_OPTIONS:MPGSQL}
	@${ECHO_MSG} ""
	@${ECHO_MSG} "1. To initialise PostgreSQL, run the following commands:"
	@${ECHO_MSG} ""
	@${ECHO_MSG} "   createdb -U pgsql -E UNICODE refdb"
	@${ECHO_MSG} "   psql -U pgsql refdb < ${PREFIX}/share/refdb/sql/refdb.dump.pgsql"
	@${ECHO_MSG} ""
.elif ${PORT_OPTIONS:MSQLITE}
	@${ECHO_MSG} ""
	@${ECHO_MSG} "1. To initialise SQLite, run the following commands:"
	@${ECHO_MSG} ""
	@${ECHO_MSG} "   cd ${PREFIX}/share/refdb/db"
	@${ECHO_MSG} "   sqlite refdb < ${PREFIX}/share/refdb/sql/refdb.dump.sqlite"
	@${ECHO_MSG} ""
.endif

.include <bsd.port.mk>

Lines 1-2 Link Here

(-)b/textproc/refdb/distinfo (-2 / +3 lines)
1	SHA256 (refdb-0.9.9-1.tar.gz) = 99f8146d646e97a32b248f7d5b530119066c2d108a8335f864816eadcfc3dec6	1	TIMESTAMP = 1644836370
2	SIZE (refdb-0.9.9-1.tar.gz) = 3209712	2	SHA256 (refdb-1.0.3.tar.gz) = bd13e788dc4ae7293a4220c0ba65330980fd123c3209b5b59f963ae85e6c26e5
		3	SIZE (refdb-1.0.3.tar.gz) = 3500489

Added Link Here

(-)b/textproc/refdb/files/patch-configure (+11 lines)
1	--- configure.orig 2022-08-06 16:56:40 UTC
2	+++ configure
3	@@ -848,7 +848,7 @@ sharedstatedir='${prefix}/com'
4	datadir='${datarootdir}'
5	sysconfdir='${prefix}/etc'
6	sharedstatedir='${prefix}/com'
7	-localstatedir='${prefix}/var'
8	+localstatedir='/var'
9	includedir='${prefix}/include'
10	oldincludedir='/usr/include'
11	docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'




--- doc/Makefile.in.orig	2014-09-10 12:40:48 UTC
+++ doc/Makefile.in
@@ -227,8 +227,8 @@ tei_xsl_ns = @tei_xsl_ns@
 trang_cmd = @trang_cmd@
 var_dir = @var_dir@
 xml_decl = @xml_decl@
-docdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/refdb-manual
-doc_DATA = refdb-manual.pdf refdb-manual/*
+docdir = $(datadir)/doc/refdb
+doc_DATA = refdb-manual/*
 indexdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/
 index_DATA = index.html
 citestylexdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/citestylex
@@ -779,7 +779,7 @@ uninstall-am: uninstall-citationlistxDAT
 	uninstall-xnoteelementsDATA
 
 
-all: refdb-manual.pdf refdb-manual/* citestylex/elements.html risx/elements.html citationlistx/elements.html xnote/elements.html
+all: refdb-manual-html citestylex/elements.html risx/elements.html citationlistx/elements.html xnote/elements.html
 
 ####################################################################
 # building the manual
@@ -804,9 +804,8 @@ refdb-manual.pdf: $(manual_sources) $(ma
 # we have to give Java a little extra memory lest fop will die a horrible death
 	JAVA_OPTS=-Xmx256M fop -fo refdb-manual.fo -pdf refdb-manual.pdf
 
-refdb-manual/*: $(manual_sources) $(manpage_sources) $(png_images) refdb-manual-statustable.xml include/manual-xhtml.xsl
+refdb-manual-html: $(manual_sources) $(manpage_sources) $(png_images) refdb-manual-statustable.xml include/manual-xhtml.xsl
 	@echo "Creating HTML manual...";
-	rm -rf refdb-manual/*
 # building outside the source dir won't work here because the docbook
 # stylesheets screw up the location of the image files for HTML output
 	mkdir -p refdb-manual && cp $(html_extra_files) refdb-manual/ && xsltproc -o refdb-manual/ --nonet --xinclude include/manual-xhtml.xsl refdb-manual.xml




--- doc/Makefile.am.orig	2022-08-12 09:25:26 UTC
+++ doc/Makefile.am
@@ -1,45 +1,45 @@
 ## Process this with automake to create Makefile.in
 
-docdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/refdb-manual
-doc_DATA = refdb-manual.pdf refdb-manual/*
+docdir = $(datadir)/doc/refdb
+doc_DATA = refdb-manual/*
 
-indexdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/
+indexdir = $(datadir)/doc/refdb/
 index_DATA = index.html
 
-citestylexdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/citestylex
+citestylexdir = $(datadir)/doc/refdb/citestylex
 citestylex_DATA = citestylex/*.html
-citestylexdtdelemdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/citestylex/dtdelem
+citestylexdtdelemdir = $(datadir)/doc/refdb/citestylex/dtdelem
 citestylexdtdelem_DATA = citestylex/dtdelem/*
-citestylexeledescdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/citestylex/ele-desc
+citestylexeledescdir = $(datadir)/doc/refdb/citestylex/ele-desc
 citestylexeledesc_DATA = $(top_srcdir)/doc/citestylex/ele-desc/*.html
-citestylexelementsdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/citestylex/elements
+citestylexelementsdir = $(datadir)/doc/refdb/citestylex/elements
 citestylexelements_DATA = citestylex/elements/*
 
-risxdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/risx
+risxdir = $(datadir)/doc/refdb/risx
 risx_DATA = risx/*.html
-risxdtdelemdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/risx/dtdelem
+risxdtdelemdir = $(datadir)/doc/refdb/risx/dtdelem
 risxdtdelem_DATA = risx/dtdelem/*
-risxeledescdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/risx/ele-desc
+risxeledescdir = $(datadir)/doc/refdb/risx/ele-desc
 risxeledesc_DATA = $(top_srcdir)/doc/risx/ele-desc/*.html
-risxelementsdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/risx/elements
+risxelementsdir = $(datadir)/doc/refdb/risx/elements
 risxelements_DATA = risx/elements/*
 
-citationlistxdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/citationlistx
+citationlistxdir = $(datadir)/doc/refdb/citationlistx
 citationlistx_DATA = citationlistx/*.html
-citationlistxdtdelemdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/citationlistx/dtdelem
+citationlistxdtdelemdir = $(datadir)/doc/refdb/citationlistx/dtdelem
 citationlistxdtdelem_DATA = citationlistx/dtdelem/*
-citationlistxeledescdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/citationlistx/ele-desc
+citationlistxeledescdir = $(datadir)/doc/refdb/citationlistx/ele-desc
 citationlistxeledesc_DATA = $(top_srcdir)/doc/citationlistx/ele-desc/*.html
-citationlistxelementsdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/citationlistx/elements
+citationlistxelementsdir = $(datadir)/doc/refdb/citationlistx/elements
 citationlistxelements_DATA = citationlistx/elements/*
 
-xnotedir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/xnote
+xnotedir = $(datadir)/doc/refdb/xnote
 xnote_DATA = xnote/*.html
-xnotedtdelemdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/xnote/dtdelem
+xnotedtdelemdir = $(datadir)/doc/refdb/xnote/dtdelem
 xnotedtdelem_DATA = xnote/dtdelem/*
-xnoteeledescdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/xnote/ele-desc
+xnoteeledescdir = $(datadir)/doc/refdb/xnote/ele-desc
 xnoteeledesc_DATA = $(top_srcdir)/doc/xnote/ele-desc/*.html
-xnoteelementsdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/xnote/elements
+xnoteelementsdir = $(datadir)/doc/refdb/xnote/elements
 xnoteelements_DATA = xnote/elements/*
 
 ####################################################################
@@ -87,10 +87,7 @@ include/fotitlepages.xsl: include/fotitlepage.template
 
 refdb-manual.pdf: $(manual_sources) $(manpage_sources) $(svg_images) refdb-manual-statustable.xml include/fotitlepages.xsl include/manual-fo.xsl
 	@echo "Creating PDF manual...";
-#	xsltproc -o refdb-manual.fo --nonet --xinclude $(top_srcdir)/doc/include/manual-fo.xsl $(top_srcdir)/doc/refdb-manual.xml
-# workaround for a null pointer exception in fop 1.0: disable hyphenation
-	@echo "hyphenation temporarily unavailable"
-	xsltproc -o refdb-manual.fo --stringparam hyphenate 0 --nonet --xinclude $(top_srcdir)/doc/include/manual-fo.xsl $(top_srcdir)/doc/refdb-manual.xml
+	xsltproc -o refdb-manual.fo --nonet --xinclude $(top_srcdir)/doc/include/manual-fo.xsl $(top_srcdir)/doc/refdb-manual.xml
 # we have to give Java a little extra memory lest fop will die a horrible death
 	JAVA_OPTS=-Xmx256M fop -fo refdb-manual.fo -pdf refdb-manual.pdf
 




--- phpweb/index.php.in.orig	2017-03-01 22:44:01 UTC
+++ phpweb/index.php.in
@@ -504,8 +504,8 @@ switch($thisPage) {
      echo "<div class=\"warning\"><p><strong class=\"warning\">" . $warning . "</strong></p></div>\n";
      unset($warning);
    }
-   echo "        <p>Username:<br/><input type=\"text\" name=\"name\" size=\"16\" maxlength=\"16\"/></p>\n";
-   echo "        <p>Password:<br/><input type=\"password\" name=\"passwd\" size=\"16\" maxlength=\"16\"/></p>\n";
+   echo "        <p>Username (max 16):<br/><input type=\"text\" name=\"name\" size=\"16\" maxlength=\"16\"/></p>\n";
+   echo "        <p>Password (max. 128):<br/><input type=\"password\" name=\"passwd\" size=\"16\" maxlength=\"128\"/></p>\n";
    echo "        <p>Remember me on this computer <input type=\"checkbox\" name=\"rememberMe\" value=\"rememberMe\"/></p>\n";
    echo "        <p><input id=\"loginbutton\" type=\"submit\" name=\"sendQuery\" value=\"Login\"/></p>\n";
    echo "    </form>\n";

Lines 1-6 Link Here

(-)b/textproc/refdb/files/patch-scripts-refdb.in (-3 / +3 lines)
1	--- scripts/refdb.in.orig Fri Aug 25 03:53:55 2006	1	--- scripts/refdb.in.orig 2022-07-12 11:47:34 UTC
2	+++ scripts/refdb.in Tue Jan 30 11:25:47 2007	2	+++ scripts/refdb.in
3	@@ -44,7 +44,7 @@	3	@@ -43,7 +43,7 @@ REFDBCTL=<prefix>/bin/<program_prefix>refdbctl<program
4	# true for BSD-UNIX and Unices derived thereof, as well as for the	4	# true for BSD-UNIX and Unices derived thereof, as well as for the
5	# Slackware Linux distribution). This setting does not perform any black	5	# Slackware Linux distribution). This setting does not perform any black
6	# magic, but it makes the screen messages at startup match the OS style	6	# magic, but it makes the screen messages at startup match the OS style

Added Link Here

(-)b/textproc/refdb/files/patch-scripts-refdb_latex2utf8txt (+69 lines)
1	--- scripts/refdb_latex2utf8txt.orig 2022-07-12 11:47:34 UTC
2	+++ scripts/refdb_latex2utf8txt
3	@@ -26,8 +26,14 @@ while(<>) {
4	s/\{\\~A\}\|\\~A\|\\~\{A\}/Ã/g;
5	s/\{\\~a\}\|\\~a\|\\~\{a\}/ã/g;
6	s/\{\\"a\}\|\\"a/ä/g;
7	- s/\{\\v\{c\}\|\{\\v c\}\|\\v c/č/g;
8	+ s/\{\\aa\}\|\\a\{a\}\|\\aa/å/g;
9	+ s/\{\\aA\}\|\\a\{A\}\|\\aA/Å/g;
10	+ s/\{\\ae\}\|\\a\{e\}\|\\ae/æ/g;
11	+ s/\{\\AE\}\|\\A\{E\}\|\\AE/Æ/g;
12	+ s/\{\\v\{c\}\|\{\\v c\}\|\\vc\|\\v c/č/g;
13	+ s/\{\\vC\}\|\{\\v C\}\|\\v\{C\}\|\\v C/Č/g;
14	s/\{\\'\{c\}\|\{\\'c\}\|\\'c/ć/g;
15	+ s/\{\\'\{C\}\|\{\\'C\}\|\\'C/Ć/g;
16	s/\{\\'e\}\|\\'e/é/g;
17	s/\{\\'E\}\|\\'E/É/g;
18	s/\{\\`e\}\|\\`e/è/g;
19	@@ -36,12 +42,17 @@ while(<>) {
20	s/\{\\^E\}\|\\^E/Ê/g;
21	s/\{\\~e\}\|\\~e\|\\~\{e\}/ẽ/g;
22	s/\{\\~E\}\|\\~E\|\\~\{E\}/Ẽ/g;
23	+ s/\{\\ve\}\|\\ve\|\\v\{e\}/ě/g;
24	s/\{\\'\\i\}\|\\'\\i/í/g;
25	s/\{\\'I\}\|\\'I/Í/g;
26	s/\{\\`\\i\}\|\\`\\i/ì/g;
27	s/\{\\`I\}\|\\`I/Ì/g;
28	s/\{\\^\\i\}\|\\^\\i/î/g;
29	s/\{\\^I\}\|\\^I/Î/g;
30	+ s/\{\\vj\}\|\\v\{j\}\|\\v j\|\\vj/ǰ/g;
31	+ s/\{\\vJ\}\|\\v\{J\}\|\\v J\|\\vJ/ǰ/g;
32	+ s/\{\\l\}\|\\l/ł/g;
33	+ s/\{\\L\}\|\\L/Ł/g;
34	s/\{\\'o\}\|\\'o/ó/g;
35	s/\{\\'O\}\|\\'O/Ó/g;
36	s/\{\\`o\}\|\\`o/ò/g;
37	@@ -50,10 +61,18 @@ while(<>) {
38	s/\{\\"O\}\|\\"O/Ö/g;
39	s/\{\\~o\}\|\\~o\|\\~\{o\}/õ/g;
40	s/\{\\~O\}\|\\~O\|\\~\{O\}/Õ/g;
41	+ s/\{\\~n\}\|\\~n\|\\~\{n\}/ñ/g;
42	+ s/\{\\~N\}\|\\~N\|\\~\{N\}/Ñ/g;
43	s/\{\\^o\}\|\\^o/ô/g;
44	s/\{\\^O\}\|\\^O/Ô/g;
45	+ s/\{\o\}\|\\o/ø/g;
46	+ s/\{\O\}\|\\O/Ø/g;
47	+ s/\{\oe\}\|\\oe/œ/g;
48	+ s/\{\OE\}\|\\OE/Œ/g;
49	s/\{\\H o\}\|\\H o/ő/g;
50	s/\{\\H O\}\|\\H O/Ő/g;
51	+ s/\{\\vo\}\|\\v\{o\}\|\\v c/ǒ/g;
52	+ s/\{\\vO\}\|\\v\{O\}\|\\v O/Ǒ/g;
53	s/\{\\'u\}\|\\'u/ú/g;
54	s/\{\\'U\}\|\\'U/Ú/g;
55	s/\{\\`u\}\|\\`u/ù/g;
56	@@ -67,7 +86,12 @@ while(<>) {
57	s/\{\\H u\}\|\\H u/ű/g;
58	s/\{\\H U\}\|\\H U/Ű/g;
59	s/\{\\ss\}\|\\ss \|\\"s/ß/g;
60	- s/\{\\v\{S\}\|\{\\v S\}/Š/g;
61	+ s/\{\\vS\}\|\\v\{S\}\|\\v S/Š/g;
62	+ s/\{\\vs\}\|\\v\{s\}\|\\v s/š/g;
63	+ s/\{\\'y\}\|\\'\{y\}\|\\'y/ý/g;
64	+ s/\{\\vZ\}\|\\v\{Z\}\|\\v Z/Ž/g;
65	+ s/\{\\vz\}\|\\v\{z\}\|\\v z/ž/g;
66	+ s/\{\\SS\}\|\\SS/ϟϟ/g;
67	s/\{\\[^ ]+//g;
68	s/([^\\])\{+/$1/g;
69	s/([^\\])\}+/$1/g;




#!/bin/sh

# O. Hartmann, 2014 - 2022
#
#
# PROVIDE: refdbd

#
# in /etc/rc.conf[.local]
# 
# and optionally set the the following variables according to your environment:
#
# Choose another PIDFILE as the configured and/or default one:
# refdbd_pidfile="/var/run/refdbd.pid"
#
# To make the refdbd daemon accessible local only (127.0.0.1), set:
# refdbd_local="YES"
#

. /etc/rc.subr


# read settings, set defaults
load_rc_config ${name}

: ${refdbd_enable:="NO"}
: ${refdbd_local:="NO"}

command="%%PREFIX%%/bin/${name}"
globalconfig="%%PREFIX%%/etc/refdb/refdbdrc"
pidfile="/var/run/${name}.pid"
extra_commands="reload"

load_rc_config ${name}

: ${refdbd_enable:="NO"}
: ${refdbd_local:="NO"}

if checkyesno refdbd_local; then
  refdbd_local_flags="-I"
else

	if [ "x${refdbd_pidfile}" != "x" ]; then
		pidfile="${refdbd_pidfile}"

	# ... if not configured via rc.conf[.local],
	# read the settings in the configure file. We're only interested in
	# nonstandard PID file settings
	else
		# ... if not configured via rc.conf[.local],
		# read the settings in the configure file. We're only interested in
		# nonstandard PID file settings

		for config in ${globalconfig}; do
			while read refdbvar refdbval; do
				if [ -n "${refdbvar}" ]; then

		done
	fi

	piddir=$( dirname ${pidfile} )
	if [ ! -d "${piddir}" ] ; then
		install -d ${piddir}
	fi

	refdbd_pid_flags="-P ${pidfile}"
}




[
{	type: install
	message: <<EOM

To complete RefDB installation, perform according to DB selection the following:

For option MYSQL:

To initialise MySQL, run the following command:
  mysql -u root -e "CREATE DATABASE refdb"
  Then, for MySQL older than 4.1, run:
  mysql -u root refdb < ${PREFIX}/share/refdb/sql/refdb.dump.mysql

MySQL 4.1 and later, run:
  mysql -u root refdb < ${PREFIX}/share/refdb/sql/refdb.dump.mysql41


For option PGSQL:

To initialise PostgreSQL, run the following commands:
  createdb -U postgres -E UNICODE refdb
  psql -U postgres refdb < ${PREFIX}/share/refdb/sql/refdb.dump.pgsql

or, on older PostgreSQL installations, run

  createdb -U pgsql -E UNICODE refdb
  psql -U pgsql refdb < ${PREFIX}/share/refdb/sql/refdb.dump.pgsql


For option SQLITE:

To initialise SQLite, run the following commands:
  cd ${PREFIX}/share/refdb/db
  sqlite refdb < ${PREFIX}/share/refdb/sql/refdb.dump.sqlite


For more informations, please feel free to visit
	
	http://refdb.sourceforge.net/index.html
EOM
}
]




bin/marc2ris
bin/med2ris
bin/refdb-backup
bin/refdb-bug
bin/refdb-init
bin/refdb-ms
bin/refdb-pubmed
bin/refdb-restore
bin/refdb-sruserver
bin/refdb_dos2unix

bin/refdbib
bin/refdbjade
bin/refdbnd
bin/refdbrtf
bin/refdbsru
bin/refdbxml
bin/refdbxp
bin/rtfcitations
bin/runbib
bin/runbib-missing
%%ETCDIR%%/bib2riscgirc.example
%%ETCDIR%%/bib2risrc.example
%%ETCDIR%%/db2risrc.example

%%ETCDIR%%/refdbdrc.sqlite3.example
%%ETCDIR%%/refdbibrc.example
%%ETCDIR%%/refdbjaderc.example
%%ETCDIR%%/refdbrtfrc.example
%%ETCDIR%%/refdbsrurc.example
%%ETCDIR%%/refdbxmlrc.example
%%ETCDIR%%/runbibrc.example
share/man/man1/bib2ris-utf8.1.gz
share/man/man1/bib2ris.1.gz
share/man/man1/db2ris.1.gz
share/man/man1/eenc.1.gz
share/man/man1/en2ris.1.gz
share/man/man1/marc2ris.1.gz
share/man/man1/med2ris.1.gz
share/man/man1/refdb-backup.1.gz
share/man/man1/refdb-bug.1.gz
share/man/man1/refdb-ms.1.gz
share/man/man1/refdb-pubmed.1.gz
share/man/man1/refdb-restore.1.gz
share/man/man1/refdb-sruserver.1.gz
share/man/man1/refdb_dos2unix.1.gz
share/man/man1/refdb_latex2utf8txt.1.gz
share/man/man1/refdba.1.gz
share/man/man1/refdbc.1.gz
share/man/man1/refdbctl.1.gz
share/man/man1/refdbd.1.gz
share/man/man1/refdbib.1.gz
share/man/man1/refdbjade.1.gz
share/man/man1/refdbnd.1.gz
share/man/man1/refdbrtf.1.gz
share/man/man1/refdbsru.1.gz
share/man/man1/refdbxml.1.gz
share/man/man1/refdbxp.1.gz
share/man/man1/rtfcitations.1.gz
share/man/man1/runbib-missing.1.gz
share/man/man1/runbib.1.gz
share/man/man8/refdb-init.8.gz
share/man/man8/refdb.8.gz
share/man/man8/refdb.sh.8.gz
%%DATADIR%%/declarations/docbook.dcl
%%DATADIR%%/declarations/xml.dcl
%%DATADIR%%/dsssl/bibdb2tei.dsl

%%DATADIR%%/dtd/xnote.dtd
%%DATADIR%%/dtd/xnote.rnc
%%DATADIR%%/dtd/xnote.rng
%%DATADIR%%/examples/Makefile.rtf.template
%%DATADIR%%/examples/Makefile.template
%%DATADIR%%/examples/dbtest.sgml
%%DATADIR%%/examples/dbtest.short.sgml

%%DATADIR%%/sru/refdbsru.css
%%DATADIR%%/sru/refdbsru.xsl
%%DATADIR%%/sru/risx.xsl
%%DATADIR%%/styles/AMA.xml
%%DATADIR%%/styles/APA.xml
%%DATADIR%%/styles/Anesth.Analg.xml
%%DATADIR%%/styles/Ann.Biomed.Eng.xml
%%DATADIR%%/styles/Ann.Thorac.Surg.xml
%%DATADIR%%/styles/Artif.Organs.xml
%%DATADIR%%/styles/Biochem.Biophys.Res.Commun.xml
%%DATADIR%%/styles/Biochem.Pharmacol.xml
%%DATADIR%%/styles/Biomaterials.xml
%%DATADIR%%/styles/Br.J.Pharmacol.xml
%%DATADIR%%/styles/CHA-MC.xml
%%DATADIR%%/styles/Chicago.xml
%%DATADIR%%/styles/Eur.J.Cardiothorac.Surg.xml
%%DATADIR%%/styles/Eur.J.Pharmacol.xml
%%DATADIR%%/styles/Harvard.xml
%%DATADIR%%/styles/J.Biol.Chem.xml
%%DATADIR%%/styles/J.Pharmacol.Exp.Ther.xml
%%DATADIR%%/styles/J.Tissue_Eng.Regen.Med.xml
%%DATADIR%%/styles/J.Vasc.Res.xml
%%DATADIR%%/styles/MLA.xml
%%DATADIR%%/styles/Murdoch.Law.xml
%%DATADIR%%/styles/Thromb.Haemost.xml
%%DATADIR%%/styles/Tissue_Eng.xml
%%DATADIR%%/styles/Turabian.xml
%%DATADIR%%/styles/Z.Geburtsh.Neonatol.xml
%%DATADIR%%/styles/authoryear-de.xml
%%DATADIR%%/styles/bibtex-abbrev.xml
%%DATADIR%%/styles/bibtex-full.xml
%%DATADIR%%/styles/citekey.xml
%%DATADIR%%/styles/ifmbe_proceedings.xml
%%DATADIR%%/styles/schemas.xml
%%DATADIR%%/www/css/main.css
%%DATADIR%%/www/css/navigationlist.css

%%DATADIR%%/xsl/tei-refdb-xsl/tei-lib/tei-refdblib.xsl
@dir %%DATADIR%%/db
@dir var/lib/refdb/db
@dir var/lib/refdb
@dir var/log
@dir var/run

Return to bug 265105

Lines 1-131 Link Here

(-)b/textproc/refdb/Makefile (-90 / +49 lines)
1	PORTNAME= refdb	1	PORTNAME= refdb
2	PORTVERSION= 0.9.9	2	PORTVERSION= 1.0.3
3	DISTVERSIONSUFFIX= -1
4	PORTREVISION= 11
5	CATEGORIES= textproc	3	CATEGORIES= textproc
6	MASTER_SITES= SF/${PORTNAME}/${PORTNAME}-src/${PORTNAME}-src-${PORTVERSION}-1	4	MASTER_SITES= https://sourceforge.net/projects/${PORTNAME}/files/latest/download/
7		5
8	MAINTAINER= ohartman@zedat.fu-berlin.de	6	MAINTAINER= port@freebsd.org
9	COMMENT= Bibliographic reference database	7	COMMENT= Bibliographic reference database
10		8
11	BROKEN_FreeBSD_13= ld: error: duplicate symbol: thecommandlist	9	LICENSE= GPLv2+
12	BROKEN_FreeBSD_14= ld: error: duplicate symbol: thecommandlist	10	LICENSE_FILE= ${WRKSRC}/COPYING
13		11
14	LIB_DEPENDS= libexpat.so:textproc/expat2 \	12	BUILD_DEPENDS= ${RUN_DEPENDS} \
15	libbtparse.so:textproc/btparse \	13	svnversion:devel/subversion
16	libdbi.so:databases/libdbi	14
		15	LIB_DEPENDS= libbtparse.so:textproc/btparse \
		16	libdbi.so:databases/libdbi \
		17	libexpat.so:textproc/expat2 \
		18	libltdl.so:devel/libltdl
		19
		20	RUN_DEPENDS= fop>=0:textproc/fop \
		21	libxslt>=0:textproc/libxslt \
		22	p5-MARC-Record>=0:textproc/p5-MARC-Record \
		23	p5-MARC-XML>=0:textproc/p5-MARC-XML \
		24	p5-XML-Parser>=0:textproc/p5-XML-Parser \
		25	xmlcatmgr>=0:textproc/xmlcatmgr
		26
		27	USES= autoreconf gettext gmake iconv libtool localbase \
		28	pathfix perl5 php:web pkgconfig readline shebangfix
		29
		30	USE_RC_SUBR= refdbd
		31
		32	SHEBANG_FILES= ${WRKSRC}/scripts/*
		33
		34	HAS_CONFIGURE= yes
		35	CONFIGURE_ARGS+= --with-classpath-root=${LOCALBASE}/share/java/classes \
		36	--with-expat-lib=${LOCALBASE}/lib
17		37
18	USES= gmake iconv readline perl5 libtool pkgconfig pathfix shebangfix
19	HAS_CONFIGURE= yes
20	INSTALL_TARGET= install-strip	38	INSTALL_TARGET= install-strip
21	PORTDOCS= *
22		39
23	CFLAGS+= -I${LOCALBASE}/include	40	CFLAGS+= -I${LOCALBASE}/include
24	LIBS+= -lm	41	LIBS+= -lm
25		42
26	CONFIGURE_ARGS= --with-expat-lib=${LOCALBASE}/lib \	43	OPTIONS_DEFINE= DOCS
27	--with-classpath-root=${PREFIX}/share/java/classes \	44	OPTIONS_DEFAULT= DOCS PGSQL
28	--with-refdb-url=http://localhost/refdb
29	XMLCATMGR= ${LOCALBASE}/bin/xmlcatmgr
30
31	OPTIONS_DEFINE= DOCS CATALOG
32	OPTIONS_SINGLE= DB	45	OPTIONS_SINGLE= DB
33	OPTIONS_SINGLE_DB= MYSQL PGSQL SQLITE	46	OPTIONS_SINGLE_DB= MYSQL PGSQL SQLITE
34	OPTIONS_EXCLUDE= CATALOG # may not be implemented correctly	47	OPTIONS_SUB= yes
35	CATALOG_DESC= Install SGML catalog	48	DOCS_BUILD_DEPENDS= docbook-xsl>0:textproc/docbook-xsl \
36		49	dtdparse>0:textproc/dtdparse
37	OPTIONS_DEFAULT= PGSQL	50	DOCS_CONFIGURE_ON= --without-docbook-xsl-ns \
38	DOCS_BUILD_DEPENDS= xsltproc:textproc/libxslt \	51	--without-tei-xsl \
39	docbook-xsl>=0:textproc/docbook-xsl	52	--without-tei-xsl-ns
40		53	DOCS_CONFIGURE_OFF= --disable-docs
41	SHEBANG_FILES= ${WRKSRC}/scripts/*	54	DOCS_CONFIGURE_WITH= docbook-xsl=${PREFIX}/share/xsl/docbook
42		55	MYSQL_USES= mysql
43	USE_RC_SUBR= refdbd	56	MYSQL_CONFIGURE_WITH= mysql
		57	PGSQL_USES= pgsql
		58	PGSQL_CONFIGURE_WITH= pgsql
		59	SQLITE_USES= sqlite
		60	SQLITE_CONFIGURE_WITH= sqlite3
44		61
45	.include <bsd.port.options.mk>	62	.include <bsd.port.options.mk>
46		63
47	.if ${PORT_OPTIONS:MMYSQL}	64	.if ${PORT_OPTIONS:MMYSQL}
48	USES+= mysql
49	# If libdbi-drivers has been built without MySQL driver, abort	65	# If libdbi-drivers has been built without MySQL driver, abort
50	.if exists(${LOCALBASE}/lib/dbd) && !exists(${LOCALBASE}/lib/dbd/libdbdmysql.so)	66	.if exists(${LOCALBASE}/lib/dbd) && !exists(${LOCALBASE}/lib/dbd/libdbdmysql.so)
51	IGNORE= rebuild databases/libdbi-drivers with MySQL support	67	IGNORE= please rebuild databases/libdbi-drivers with MySQL support
52	.elif !exists(${LOCALBASE}/lib/dbd)	68	.elif !exists(${LOCALBASE}/lib/dbd)
53	BUILD_DEPENDS+= ${LOCALBASE}/lib/dbd:databases/libdbi-drivers	69	BUILD_DEPENDS+= ${LOCALBASE}/lib/dbd:databases/libdbi-drivers
54	.endif	70	.endif
55	CONFIGURE_ARGS+= --with-db-server=mysql
56		71
57	.elif ${PORT_OPTIONS:MPGSQL}	72	.elif ${PORT_OPTIONS:MPGSQL}
58	USES+= pgsql
59	# If libdbi-drivers has been built without PostgreSQL driver, abort	73	# If libdbi-drivers has been built without PostgreSQL driver, abort
60	.if exists(${LOCALBASE}/lib/dbd) && !exists(${LOCALBASE}/lib/dbd/libdbdpgsql.so)	74	.if exists(${LOCALBASE}/lib/dbd) && !exists(${LOCALBASE}/lib/dbd/libdbdpgsql.so)
61	IGNORE= rebuild databases/libdbi-drivers with PostgreSQL support	75	IGNORE= please rebuild databases/libdbi-drivers with PostgreSQL support
62	.elif !exists(${LOCALBASE}/lib/dbd)	76	.elif !exists(${LOCALBASE}/lib/dbd)
63	BUILD_DEPENDS+= ${LOCALBASE}/lib/dbd:databases/libdbi-drivers	77	BUILD_DEPENDS+= ${LOCALBASE}/lib/dbd:databases/libdbi-drivers
64	.endif	78	.endif
65	CONFIGURE_ARGS+= --with-db-server=pgsql
66		79
67	.elif ${PORT_OPTIONS:MSQLITE}	80	.elif ${PORT_OPTIONS:MSQLITE}
68	LIB_DEPENDS+= libsqlite3.so:databases/sqlite3
69	# If libdbi-drivers has been built without SQLite driver, abort	81	# If libdbi-drivers has been built without SQLite driver, abort
70	.if exists(${LOCALBASE}/lib/dbd) && !exists(${LOCALBASE}/lib/dbd/libdbdsqlite3.so)	82	.if exists(${LOCALBASE}/lib/dbd) && !exists(${LOCALBASE}/lib/dbd/libdbdsqlite3.so)
71	IGNORE= rebuild databases/libdbi-drivers with SQLite support	83	IGNORE= please rebuild databases/libdbi-drivers with SQLite support
72	.elif !exists(${LOCALBASE}/lib/dbd)	84	.elif !exists(${LOCALBASE}/lib/dbd)
73	BUILD_DEPENDS+= ${LOCALBASE}/lib/dbd:databases/libdbi-drivers	85	BUILD_DEPENDS+= ${LOCALBASE}/lib/dbd:databases/libdbi-drivers
74	.endif	86	.endif
75	CONFIGURE_ARGS+= --with-db-server=sqlite
76	.endif
77
78	.if ${PORT_OPTIONS:MDOCS}
79	CONFIGURE_ARGS+= --with-docbook-xsl=${PREFIX}/share/xsl/docbook \
80	--without-docbook-xsl-ns \
81	--without-tei-xsl \
82	--without-tei-xsl-ns
83	.else
84	CONFIGURE_ARGS+= --disable-docs
85	.endif
86		87
87	.if ${PORT_OPTIONS:MCATALOG}
88	RUN_DEPENDS+= xmlcatmgr:textproc/xmlcatmgr
89	.endif
90
91	post-patch:
92	${REINPLACE_CMD} -e 's\|$$(PACKAGE)-$$(VERSION)\|refdb\|g' \
93	${WRKSRC}/doc/Makefile.in
94
95	post-install:
96	.if ${PORT_OPTIONS:MCATALOG}
97	@[ -f ${STAGEDIR}${PREFIX}/share/sgml/catalog.ports ] \|\| ${TOUCH} ${STAGEDIR}${PREFIX}/share/sgml/catalog.ports
98	@${XMLCATMGR} -s -c ${STAGEDIR}${PREFIX}/share/sgml/catalog.ports lookup "${STAGEDIR}${PREFIX}/share/refdb/refdb.cat" > /dev/null \|\| ${XMLCATMGR} -s -c ${STAGEDIR}${PREFIX}/share/sgml/catalog.ports add CATALOG "${STAGEDIR}${PREFIX}/share/refdb/refdb.cat" -- > /dev/null
99	.endif
100	@${ECHO_MSG} "To complete RefDB installation:"
101	.if ${PORT_OPTIONS:MMYSQL}
102	@${ECHO_MSG} ""
103	@${ECHO_MSG} "1. To initialise MySQL, run the following command:"
104	@${ECHO_MSG} ""
105	@${ECHO_MSG} " mysql -u root -e \"CREATE DATABASE refdb\""
106	@${ECHO_MSG} ""
107	@${ECHO_MSG} " Then, for MySQL older than 4.1, run:"
108	@${ECHO_MSG} ""
109	@${ECHO_MSG} " mysql -u root refdb < ${PREFIX}/share/refdb/sql/refdb.dump.mysql"
110	@${ECHO_MSG} ""
111	@${ECHO_MSG} " For MySQL 4.1 and later, run:"
112	@${ECHO_MSG} ""
113	@${ECHO_MSG} " mysql -u root refdb < ${PREFIX}/share/refdb/sql/refdb.dump.mysql41"
114	@${ECHO_MSG} ""
115	.elif ${PORT_OPTIONS:MPGSQL}
116	@${ECHO_MSG} ""
117	@${ECHO_MSG} "1. To initialise PostgreSQL, run the following commands:"
118	@${ECHO_MSG} ""
119	@${ECHO_MSG} " createdb -U pgsql -E UNICODE refdb"
120	@${ECHO_MSG} " psql -U pgsql refdb < ${PREFIX}/share/refdb/sql/refdb.dump.pgsql"
121	@${ECHO_MSG} ""
122	.elif ${PORT_OPTIONS:MSQLITE}
123	@${ECHO_MSG} ""
124	@${ECHO_MSG} "1. To initialise SQLite, run the following commands:"
125	@${ECHO_MSG} ""
126	@${ECHO_MSG} " cd ${PREFIX}/share/refdb/db"
127	@${ECHO_MSG} " sqlite refdb < ${PREFIX}/share/refdb/sql/refdb.dump.sqlite"
128	@${ECHO_MSG} ""
129	.endif	88	.endif
130		89
131	.include <bsd.port.mk>	90	.include <bsd.port.mk>

Lines 1-33 Link Here

(-)b/textproc/refdb/files/patch-doc_Makefile.in (-33 lines)
1	--- doc/Makefile.in.orig 2014-09-10 12:40:48 UTC
2	+++ doc/Makefile.in
3	@@ -227,8 +227,8 @@ tei_xsl_ns = @tei_xsl_ns@
4	trang_cmd = @trang_cmd@
5	var_dir = @var_dir@
6	xml_decl = @xml_decl@
7	-docdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/refdb-manual
8	-doc_DATA = refdb-manual.pdf refdb-manual/*
9	+docdir = $(datadir)/doc/refdb
10	+doc_DATA = refdb-manual/*
11	indexdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/
12	index_DATA = index.html
13	citestylexdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/citestylex
14	@@ -779,7 +779,7 @@ uninstall-am: uninstall-citationlistxDAT
15	uninstall-xnoteelementsDATA
16
17
18	-all: refdb-manual.pdf refdb-manual/* citestylex/elements.html risx/elements.html citationlistx/elements.html xnote/elements.html
19	+all: refdb-manual-html citestylex/elements.html risx/elements.html citationlistx/elements.html xnote/elements.html
20
21	####################################################################
22	# building the manual
23	@@ -804,9 +804,8 @@ refdb-manual.pdf: $(manual_sources) $(ma
24	# we have to give Java a little extra memory lest fop will die a horrible death
25	JAVA_OPTS=-Xmx256M fop -fo refdb-manual.fo -pdf refdb-manual.pdf
26
27	-refdb-manual/*: $(manual_sources) $(manpage_sources) $(png_images) refdb-manual-statustable.xml include/manual-xhtml.xsl
28	+refdb-manual-html: $(manual_sources) $(manpage_sources) $(png_images) refdb-manual-statustable.xml include/manual-xhtml.xsl
29	@echo "Creating HTML manual...";
30	- rm -rf refdb-manual/*
31	# building outside the source dir won't work here because the docbook
32	# stylesheets screw up the location of the image files for HTML output
33	mkdir -p refdb-manual && cp $(html_extra_files) refdb-manual/ && xsltproc -o refdb-manual/ --nonet --xinclude include/manual-xhtml.xsl refdb-manual.xml

Added Link Here

(-)b/textproc/refdb/files/patch-doc__Makefile.am (+79 lines)
1	--- doc/Makefile.am.orig 2022-08-12 09:25:26 UTC
2	+++ doc/Makefile.am
3	@@ -1,45 +1,45 @@
4	## Process this with automake to create Makefile.in
5
6	-docdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/refdb-manual
7	-doc_DATA = refdb-manual.pdf refdb-manual/*
8	+docdir = $(datadir)/doc/refdb
9	+doc_DATA = refdb-manual/*
10
11	-indexdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/
12	+indexdir = $(datadir)/doc/refdb/
13	index_DATA = index.html
14
15	-citestylexdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/citestylex
16	+citestylexdir = $(datadir)/doc/refdb/citestylex
17	citestylex_DATA = citestylex/*.html
18	-citestylexdtdelemdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/citestylex/dtdelem
19	+citestylexdtdelemdir = $(datadir)/doc/refdb/citestylex/dtdelem
20	citestylexdtdelem_DATA = citestylex/dtdelem/*
21	-citestylexeledescdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/citestylex/ele-desc
22	+citestylexeledescdir = $(datadir)/doc/refdb/citestylex/ele-desc
23	citestylexeledesc_DATA = $(top_srcdir)/doc/citestylex/ele-desc/*.html
24	-citestylexelementsdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/citestylex/elements
25	+citestylexelementsdir = $(datadir)/doc/refdb/citestylex/elements
26	citestylexelements_DATA = citestylex/elements/*
27
28	-risxdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/risx
29	+risxdir = $(datadir)/doc/refdb/risx
30	risx_DATA = risx/*.html
31	-risxdtdelemdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/risx/dtdelem
32	+risxdtdelemdir = $(datadir)/doc/refdb/risx/dtdelem
33	risxdtdelem_DATA = risx/dtdelem/*
34	-risxeledescdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/risx/ele-desc
35	+risxeledescdir = $(datadir)/doc/refdb/risx/ele-desc
36	risxeledesc_DATA = $(top_srcdir)/doc/risx/ele-desc/*.html
37	-risxelementsdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/risx/elements
38	+risxelementsdir = $(datadir)/doc/refdb/risx/elements
39	risxelements_DATA = risx/elements/*
40
41	-citationlistxdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/citationlistx
42	+citationlistxdir = $(datadir)/doc/refdb/citationlistx
43	citationlistx_DATA = citationlistx/*.html
44	-citationlistxdtdelemdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/citationlistx/dtdelem
45	+citationlistxdtdelemdir = $(datadir)/doc/refdb/citationlistx/dtdelem
46	citationlistxdtdelem_DATA = citationlistx/dtdelem/*
47	-citationlistxeledescdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/citationlistx/ele-desc
48	+citationlistxeledescdir = $(datadir)/doc/refdb/citationlistx/ele-desc
49	citationlistxeledesc_DATA = $(top_srcdir)/doc/citationlistx/ele-desc/*.html
50	-citationlistxelementsdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/citationlistx/elements
51	+citationlistxelementsdir = $(datadir)/doc/refdb/citationlistx/elements
52	citationlistxelements_DATA = citationlistx/elements/*
53
54	-xnotedir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/xnote
55	+xnotedir = $(datadir)/doc/refdb/xnote
56	xnote_DATA = xnote/*.html
57	-xnotedtdelemdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/xnote/dtdelem
58	+xnotedtdelemdir = $(datadir)/doc/refdb/xnote/dtdelem
59	xnotedtdelem_DATA = xnote/dtdelem/*
60	-xnoteeledescdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/xnote/ele-desc
61	+xnoteeledescdir = $(datadir)/doc/refdb/xnote/ele-desc
62	xnoteeledesc_DATA = $(top_srcdir)/doc/xnote/ele-desc/*.html
63	-xnoteelementsdir = $(datadir)/doc/$(PACKAGE)-$(VERSION)/xnote/elements
64	+xnoteelementsdir = $(datadir)/doc/refdb/xnote/elements
65	xnoteelements_DATA = xnote/elements/*
66
67	####################################################################
68	@@ -87,10 +87,7 @@ include/fotitlepages.xsl: include/fotitlepage.template
69
70	refdb-manual.pdf: $(manual_sources) $(manpage_sources) $(svg_images) refdb-manual-statustable.xml include/fotitlepages.xsl include/manual-fo.xsl
71	@echo "Creating PDF manual...";
72	-# xsltproc -o refdb-manual.fo --nonet --xinclude $(top_srcdir)/doc/include/manual-fo.xsl $(top_srcdir)/doc/refdb-manual.xml
73	-# workaround for a null pointer exception in fop 1.0: disable hyphenation
74	- @echo "hyphenation temporarily unavailable"
75	- xsltproc -o refdb-manual.fo --stringparam hyphenate 0 --nonet --xinclude $(top_srcdir)/doc/include/manual-fo.xsl $(top_srcdir)/doc/refdb-manual.xml
76	+ xsltproc -o refdb-manual.fo --nonet --xinclude $(top_srcdir)/doc/include/manual-fo.xsl $(top_srcdir)/doc/refdb-manual.xml
77	# we have to give Java a little extra memory lest fop will die a horrible death
78	JAVA_OPTS=-Xmx256M fop -fo refdb-manual.fo -pdf refdb-manual.pdf
79

Added Link Here

(-)b/textproc/refdb/files/patch-phpweb-index.php.in (+13 lines)
1	--- phpweb/index.php.in.orig 2017-03-01 22:44:01 UTC
2	+++ phpweb/index.php.in
3	@@ -504,8 +504,8 @@ switch($thisPage) {
4	echo "<div class=\"warning\"><p><strong class=\"warning\">" . $warning . "</strong></p></div>\n";
5	unset($warning);
6	}
7	- echo " <p>Username:<br/><input type=\"text\" name=\"name\" size=\"16\" maxlength=\"16\"/></p>\n";
8	- echo " <p>Password:<br/><input type=\"password\" name=\"passwd\" size=\"16\" maxlength=\"16\"/></p>\n";
9	+ echo " <p>Username (max 16):<br/><input type=\"text\" name=\"name\" size=\"16\" maxlength=\"16\"/></p>\n";
10	+ echo " <p>Password (max. 128):<br/><input type=\"password\" name=\"passwd\" size=\"16\" maxlength=\"128\"/></p>\n";
11	echo " <p>Remember me on this computer <input type=\"checkbox\" name=\"rememberMe\" value=\"rememberMe\"/></p>\n";
12	echo " <p><input id=\"loginbutton\" type=\"submit\" name=\"sendQuery\" value=\"Login\"/></p>\n";
13	echo " </form>\n";

Lines 1-6 Link Here

(-)b/textproc/refdb/files/refdbd.in (-13 / +15 lines)
1	#!/bin/sh	1	#!/bin/sh
2		2
3	# O. Hartmann, Berlin, 2014	3	# O. Hartmann, 2014 - 2022
4	#	4	#
5	#	5	#
6	# PROVIDE: refdbd	6	# PROVIDE: refdbd
Lines 13-25 Link Here
13	#	13	#
14	# in /etc/rc.conf[.local]	14	# in /etc/rc.conf[.local]
15	#	15	#
16	# and optionally set the the following variables upon your environment:	16	# and optionally set the the following variables according to your environment:
17	#	17	#
18	# Choose another PIDFILE as the configured and/or default one:	18	# Choose another PIDFILE as the configured and/or default one:
19	# refdbd_pidfile="/var/run/refdbd.pid"	19	# refdbd_pidfile="/var/run/refdbd.pid"
20	#	20	#
21	# To make the refdbd daemon accessible local only (127.0.0.1):	21	# To make the refdbd daemon accessible local only (127.0.0.1), set:
22	# refdbd_local="YES"	22	# refdbd_local="YES"
		23	#
23		24
24	. /etc/rc.subr	25	. /etc/rc.subr
25		26
Lines 29-44 rcvar=refdbd_enable Link Here
29	# read settings, set defaults	30	# read settings, set defaults
30	load_rc_config ${name}	31	load_rc_config ${name}
31		32
		33	: ${refdbd_enable:="NO"}
		34	: ${refdbd_local:="NO"}
		35
32	command="%%PREFIX%%/bin/${name}"	36	command="%%PREFIX%%/bin/${name}"
33	globalconfig="%%PREFIX%%/etc/refdb/refdbdrc"	37	globalconfig="%%PREFIX%%/etc/refdb/refdbdrc"
34	pidfile="/var/run/${name}.pid"	38	pidfile="/var/run/${name}.pid"
35	extra_commands="reload"	39	extra_commands="reload"
36		40
37	load_rc_config ${name}
38
39	: ${refdbd_enable:="NO"}
40	: ${refdbd_local:="NO"}
41
42	if checkyesno refdbd_local; then	41	if checkyesno refdbd_local; then
43	refdbd_local_flags="-I"	42	refdbd_local_flags="-I"
44	else	43	else
Lines 55-64 refdbd_prestart() Link Here
55	if [ "x${refdbd_pidfile}" != "x" ]; then	54	if [ "x${refdbd_pidfile}" != "x" ]; then
56	pidfile="${refdbd_pidfile}"	55	pidfile="${refdbd_pidfile}"
57		56
58	# ... if not configured via rc.conf[.local],
59	# read the settings in the configure file. We're only interested in
60	# nonstandard PID file settings
61	else	57	else
		58	# ... if not configured via rc.conf[.local],
		59	# read the settings in the configure file. We're only interested in
		60	# nonstandard PID file settings
		61
62	for config in ${globalconfig}; do	62	for config in ${globalconfig}; do
63	while read refdbvar refdbval; do	63	while read refdbvar refdbval; do
64	if [ -n "${refdbvar}" ]; then	64	if [ -n "${refdbvar}" ]; then
Lines 70-77 refdbd_prestart() Link Here
70	done	70	done
71	fi	71	fi
72		72
73	piddir=`dirname ${pidfile}`	73	piddir=$( dirname ${pidfile} )
74	mkdir -p ${piddir}	74	if [ ! -d "${piddir}" ] ; then
		75	install -d ${piddir}
		76	fi
75		77
76	refdbd_pid_flags="-P ${pidfile}"	78	refdbd_pid_flags="-P ${pidfile}"
77	}	79	}

Added Link Here

(-)b/textproc/refdb/pkg-message (+42 lines)
1	[
2	{ type: install
3	message: <<EOM
4
5	To complete RefDB installation, perform according to DB selection the following:
6
7	For option MYSQL:
8
9	To initialise MySQL, run the following command:
10	mysql -u root -e "CREATE DATABASE refdb"
11	Then, for MySQL older than 4.1, run:
12	mysql -u root refdb < ${PREFIX}/share/refdb/sql/refdb.dump.mysql
13
14	MySQL 4.1 and later, run:
15	mysql -u root refdb < ${PREFIX}/share/refdb/sql/refdb.dump.mysql41
16
17
18	For option PGSQL:
19
20	To initialise PostgreSQL, run the following commands:
21	createdb -U postgres -E UNICODE refdb
22	psql -U postgres refdb < ${PREFIX}/share/refdb/sql/refdb.dump.pgsql
23
24	or, on older PostgreSQL installations, run
25
26	createdb -U pgsql -E UNICODE refdb
27	psql -U pgsql refdb < ${PREFIX}/share/refdb/sql/refdb.dump.pgsql
28
29
30	For option SQLITE:
31
32	To initialise SQLite, run the following commands:
33	cd ${PREFIX}/share/refdb/db
34	sqlite refdb < ${PREFIX}/share/refdb/sql/refdb.dump.sqlite
35
36
37	For more informations, please feel free to visit
38
39	http://refdb.sourceforge.net/index.html
40	EOM
41	}
42	]

Lines 6-13 bin/en2ris Link Here

(-)b/textproc/refdb/pkg-plist (-28 / +61 lines)
6	bin/marc2ris	6	bin/marc2ris
7	bin/med2ris	7	bin/med2ris
8	bin/refdb-backup	8	bin/refdb-backup
		9	bin/refdb-bug
9	bin/refdb-init	10	bin/refdb-init
10	bin/refdb-ms	11	bin/refdb-ms
		12	bin/refdb-pubmed
11	bin/refdb-restore	13	bin/refdb-restore
12	bin/refdb-sruserver	14	bin/refdb-sruserver
13	bin/refdb_dos2unix	15	bin/refdb_dos2unix
Lines 19-28 bin/refdbd Link Here
19	bin/refdbib	21	bin/refdbib
20	bin/refdbjade	22	bin/refdbjade
21	bin/refdbnd	23	bin/refdbnd
		24	bin/refdbrtf
22	bin/refdbsru	25	bin/refdbsru
23	bin/refdbxml	26	bin/refdbxml
24	bin/refdbxp	27	bin/refdbxp
		28	bin/rtfcitations
25	bin/runbib	29	bin/runbib
		30	bin/runbib-missing
26	%%ETCDIR%%/bib2riscgirc.example	31	%%ETCDIR%%/bib2riscgirc.example
27	%%ETCDIR%%/bib2risrc.example	32	%%ETCDIR%%/bib2risrc.example
28	%%ETCDIR%%/db2risrc.example	33	%%ETCDIR%%/db2risrc.example
Lines 38-74 bin/runbib Link Here
38	%%ETCDIR%%/refdbdrc.sqlite3.example	43	%%ETCDIR%%/refdbdrc.sqlite3.example
39	%%ETCDIR%%/refdbibrc.example	44	%%ETCDIR%%/refdbibrc.example
40	%%ETCDIR%%/refdbjaderc.example	45	%%ETCDIR%%/refdbjaderc.example
		46	%%ETCDIR%%/refdbrtfrc.example
41	%%ETCDIR%%/refdbsrurc.example	47	%%ETCDIR%%/refdbsrurc.example
42	%%ETCDIR%%/refdbxmlrc.example	48	%%ETCDIR%%/refdbxmlrc.example
43	%%ETCDIR%%/runbibrc.example	49	%%ETCDIR%%/runbibrc.example
44	man/man1/bib2ris-utf8.1.gz	50	share/man/man1/bib2ris-utf8.1.gz
45	man/man1/bib2ris.1.gz	51	share/man/man1/bib2ris.1.gz
46	man/man1/db2ris.1.gz	52	share/man/man1/db2ris.1.gz
47	man/man1/eenc.1.gz	53	share/man/man1/eenc.1.gz
48	man/man1/en2ris.1.gz	54	share/man/man1/en2ris.1.gz
49	man/man1/marc2ris.1.gz	55	share/man/man1/marc2ris.1.gz
50	man/man1/med2ris.1.gz	56	share/man/man1/med2ris.1.gz
51	man/man1/refdb-backup.1.gz	57	share/man/man1/refdb-backup.1.gz
52	man/man1/refdb-bug.1.gz	58	share/man/man1/refdb-bug.1.gz
53	man/man1/refdb-ms.1.gz	59	share/man/man1/refdb-ms.1.gz
54	man/man1/refdb-restore.1.gz	60	share/man/man1/refdb-pubmed.1.gz
55	man/man1/refdb-sruserver.1.gz	61	share/man/man1/refdb-restore.1.gz
56	man/man1/refdb_dos2unix.1.gz	62	share/man/man1/refdb-sruserver.1.gz
57	man/man1/refdb_latex2utf8txt.1.gz	63	share/man/man1/refdb_dos2unix.1.gz
58	man/man1/refdba.1.gz	64	share/man/man1/refdb_latex2utf8txt.1.gz
59	man/man1/refdbc.1.gz	65	share/man/man1/refdba.1.gz
60	man/man1/refdbctl.1.gz	66	share/man/man1/refdbc.1.gz
61	man/man1/refdbd.1.gz	67	share/man/man1/refdbctl.1.gz
62	man/man1/refdbib.1.gz	68	share/man/man1/refdbd.1.gz
63	man/man1/refdbjade.1.gz	69	share/man/man1/refdbib.1.gz
64	man/man1/refdbnd.1.gz	70	share/man/man1/refdbjade.1.gz
65	man/man1/refdbsru.1.gz	71	share/man/man1/refdbnd.1.gz
66	man/man1/refdbxml.1.gz	72	share/man/man1/refdbrtf.1.gz
67	man/man1/refdbxp.1.gz	73	share/man/man1/refdbsru.1.gz
68	man/man1/runbib.1.gz	74	share/man/man1/refdbxml.1.gz
69	man/man8/refdb-init.8.gz	75	share/man/man1/refdbxp.1.gz
70	man/man8/refdb.8.gz	76	share/man/man1/rtfcitations.1.gz
71	man/man8/refdb.sh.8.gz	77	share/man/man1/runbib-missing.1.gz
		78	share/man/man1/runbib.1.gz
		79	share/man/man8/refdb-init.8.gz
		80	share/man/man8/refdb.8.gz
		81	share/man/man8/refdb.sh.8.gz
72	%%DATADIR%%/declarations/docbook.dcl	82	%%DATADIR%%/declarations/docbook.dcl
73	%%DATADIR%%/declarations/xml.dcl	83	%%DATADIR%%/declarations/xml.dcl
74	%%DATADIR%%/dsssl/bibdb2tei.dsl	84	%%DATADIR%%/dsssl/bibdb2tei.dsl
Lines 93-98 man/man8/refdb.sh.8.gz Link Here
93	%%DATADIR%%/dtd/xnote.dtd	103	%%DATADIR%%/dtd/xnote.dtd
94	%%DATADIR%%/dtd/xnote.rnc	104	%%DATADIR%%/dtd/xnote.rnc
95	%%DATADIR%%/dtd/xnote.rng	105	%%DATADIR%%/dtd/xnote.rng
		106	%%DATADIR%%/examples/Makefile.rtf.template
96	%%DATADIR%%/examples/Makefile.template	107	%%DATADIR%%/examples/Makefile.template
97	%%DATADIR%%/examples/dbtest.sgml	108	%%DATADIR%%/examples/dbtest.sgml
98	%%DATADIR%%/examples/dbtest.short.sgml	109	%%DATADIR%%/examples/dbtest.short.sgml
Lines 122-136 man/man8/refdb.sh.8.gz Link Here
122	%%DATADIR%%/sru/refdbsru.css	133	%%DATADIR%%/sru/refdbsru.css
123	%%DATADIR%%/sru/refdbsru.xsl	134	%%DATADIR%%/sru/refdbsru.xsl
124	%%DATADIR%%/sru/risx.xsl	135	%%DATADIR%%/sru/risx.xsl
		136	%%DATADIR%%/styles/AMA.xml
125	%%DATADIR%%/styles/APA.xml	137	%%DATADIR%%/styles/APA.xml
		138	%%DATADIR%%/styles/Anesth.Analg.xml
		139	%%DATADIR%%/styles/Ann.Biomed.Eng.xml
		140	%%DATADIR%%/styles/Ann.Thorac.Surg.xml
		141	%%DATADIR%%/styles/Artif.Organs.xml
		142	%%DATADIR%%/styles/Biochem.Biophys.Res.Commun.xml
		143	%%DATADIR%%/styles/Biochem.Pharmacol.xml
126	%%DATADIR%%/styles/Biomaterials.xml	144	%%DATADIR%%/styles/Biomaterials.xml
		145	%%DATADIR%%/styles/Br.J.Pharmacol.xml
		146	%%DATADIR%%/styles/CHA-MC.xml
		147	%%DATADIR%%/styles/Chicago.xml
		148	%%DATADIR%%/styles/Eur.J.Cardiothorac.Surg.xml
127	%%DATADIR%%/styles/Eur.J.Pharmacol.xml	149	%%DATADIR%%/styles/Eur.J.Pharmacol.xml
		150	%%DATADIR%%/styles/Harvard.xml
128	%%DATADIR%%/styles/J.Biol.Chem.xml	151	%%DATADIR%%/styles/J.Biol.Chem.xml
		152	%%DATADIR%%/styles/J.Pharmacol.Exp.Ther.xml
		153	%%DATADIR%%/styles/J.Tissue_Eng.Regen.Med.xml
		154	%%DATADIR%%/styles/J.Vasc.Res.xml
		155	%%DATADIR%%/styles/MLA.xml
129	%%DATADIR%%/styles/Murdoch.Law.xml	156	%%DATADIR%%/styles/Murdoch.Law.xml
		157	%%DATADIR%%/styles/Thromb.Haemost.xml
130	%%DATADIR%%/styles/Tissue_Eng.xml	158	%%DATADIR%%/styles/Tissue_Eng.xml
		159	%%DATADIR%%/styles/Turabian.xml
		160	%%DATADIR%%/styles/Z.Geburtsh.Neonatol.xml
		161	%%DATADIR%%/styles/authoryear-de.xml
131	%%DATADIR%%/styles/bibtex-abbrev.xml	162	%%DATADIR%%/styles/bibtex-abbrev.xml
132	%%DATADIR%%/styles/bibtex-full.xml	163	%%DATADIR%%/styles/bibtex-full.xml
133	%%DATADIR%%/styles/citekey.xml	164	%%DATADIR%%/styles/citekey.xml
		165	%%DATADIR%%/styles/ifmbe_proceedings.xml
134	%%DATADIR%%/styles/schemas.xml	166	%%DATADIR%%/styles/schemas.xml
135	%%DATADIR%%/www/css/main.css	167	%%DATADIR%%/www/css/main.css
136	%%DATADIR%%/www/css/navigationlist.css	168	%%DATADIR%%/www/css/navigationlist.css
Lines 176-180 man/man8/refdb.sh.8.gz Link Here
176	%%DATADIR%%/xsl/tei-refdb-xsl/tei-lib/tei-refdblib.xsl	208	%%DATADIR%%/xsl/tei-refdb-xsl/tei-lib/tei-refdblib.xsl
177	@dir %%DATADIR%%/db	209	@dir %%DATADIR%%/db
178	@dir var/lib/refdb/db	210	@dir var/lib/refdb/db
		211	@dir var/lib/refdb
179	@dir var/log	212	@dir var/log
180	@dir var/run	213	@dir var/run