From da92e16334a78c88ad449bc096a093e69b5a535c Mon Sep 17 00:00:00 2001
From: Älven <alster@vinterdalen.se>
Date: Mon, 4 Nov 2024 18:17:03 +0400
Subject: [PATCH] biology/abyss: update 2.3.9 → 2.3.10
MIME-Version: 1.0
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---
biology/abyss/Makefile | 13 +++++++------
biology/abyss/distinfo | 6 +++---
2 files changed, 10 insertions(+), 9 deletions(-)
diff --git a/biology/abyss/Makefile b/biology/abyss/Makefile
index 9f4072a59815..866362583846 100644
--- a/biology/abyss/Makefile
+++ b/biology/abyss/Makefile
@@ -1,10 +1,10 @@
PORTNAME= abyss
-DISTVERSION= 2.3.9
+DISTVERSION= 2.3.10
CATEGORIES= biology
MAINTAINER= yuri@FreeBSD.org
COMMENT= Assembly By Short Sequences: parallel, paired-end sequence assembler
-WWW= https://www.bcgsc.ca/resources/software/abyss
+WWW= https://www.bcgsc.ca/resources/software/abyss/
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/LICENSE
@@ -33,15 +33,16 @@ make_CMD= ${PREFIX}/bin/gmake
GNU_CONFIGURE= yes
CONFIGURE_ARGS= --without-sparsehash # configure fails to find std::hash, reported to the ML: https://groups.google.com/forum/#!topic/trans-abyss/SZDBKR5bKxs
-GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
-TEST_TARGET= check # tests fail to compile, see https://github.com/bcgsc/abyss/issues/453
+TEST_TARGET= check
-OPTIONS_DEFINE= DOCS
+PORTSCOUT= limit:^[0-9\.]*$$ # to ignore alpha-numeric tags
PORTDOCS= *
-PORTSCOUT= limit:^[0-9\.]*$$ # to ignore alpha-numeric tags
+OPTIONS_DEFINE= DOCS
+
+TESTING_UNSAFE= yes # tests fail to compile, see https://github.com/bcgsc/abyss/issues/453
.include <bsd.port.pre.mk>
diff --git a/biology/abyss/distinfo b/biology/abyss/distinfo
index c57848eae017..9846a81f350c 100644
--- a/biology/abyss/distinfo
+++ b/biology/abyss/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1726117023
-SHA256 (bcgsc-abyss-2.3.9_GH0.tar.gz) = 68e0bb05526a1daaeea91e036fb227e7adde938fa2eeaa7c7225997c00e367d5
-SIZE (bcgsc-abyss-2.3.9_GH0.tar.gz) = 1323783
+TIMESTAMP = 1730727252
+SHA256 (bcgsc-abyss-2.3.10_GH0.tar.gz) = 08ff30002113280ae75228eb1e29cf835318c7ef783ccf24fbe7350d49b4043c
+SIZE (bcgsc-abyss-2.3.10_GH0.tar.gz) = 1323490
--
2.47.0