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PORTNAME= abyss |
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PORTNAME= abyss |
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DISTVERSION= 2.3.9 |
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DISTVERSION= 2.3.10 |
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CATEGORIES= biology |
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CATEGORIES= biology |
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MAINTAINER= yuri@FreeBSD.org |
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MAINTAINER= yuri@FreeBSD.org |
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COMMENT= Assembly By Short Sequences: parallel, paired-end sequence assembler |
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COMMENT= Assembly By Short Sequences: parallel, paired-end sequence assembler |
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WWW= https://www.bcgsc.ca/resources/software/abyss |
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WWW= https://www.bcgsc.ca/resources/software/abyss/ |
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LICENSE= GPLv3 |
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LICENSE= GPLv3 |
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LICENSE_FILE= ${WRKSRC}/LICENSE |
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LICENSE_FILE= ${WRKSRC}/LICENSE |
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make_CMD= ${PREFIX}/bin/gmake
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GNU_CONFIGURE= yes |
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GNU_CONFIGURE= yes |
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CONFIGURE_ARGS= --without-sparsehash # configure fails to find std::hash, reported to the ML: https://groups.google.com/forum/#!topic/trans-abyss/SZDBKR5bKxs |
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CONFIGURE_ARGS= --without-sparsehash # configure fails to find std::hash, reported to the ML: https://groups.google.com/forum/#!topic/trans-abyss/SZDBKR5bKxs |
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GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share |
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TEST_TARGET= check # tests fail to compile, see https://github.com/bcgsc/abyss/issues/453 |
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TEST_TARGET= check |
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OPTIONS_DEFINE= DOCS |
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PORTSCOUT= limit:^[0-9\.]*$$ # to ignore alpha-numeric tags |
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PORTDOCS= * |
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PORTDOCS= * |
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PORTSCOUT= limit:^[0-9\.]*$$ # to ignore alpha-numeric tags |
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OPTIONS_DEFINE= DOCS |
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TESTING_UNSAFE= yes # tests fail to compile, see https://github.com/bcgsc/abyss/issues/453 |
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.include <bsd.port.pre.mk> |
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.include <bsd.port.pre.mk> |
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