Attachment 254932 Details for Bug 282540 – [PATCH] biology/abyss: update 2.3.9 → 2.3.10

[patch] [PATCH] biology/abyss: update 2.3.9 → 2.3.10

0001-biology-abyss-update-2.3.9-2.3.10.patch (text/plain), 2.14 KB, created by Älven on 2024-11-04 15:00:39 UTC

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Creator: Älven

Created: 2024-11-04 15:00:39 UTC

Size: 2.14 KB

patch

obsolete

>From da92e16334a78c88ad449bc096a093e69b5a535c Mon Sep 17 00:00:00 2001
>From: Ãlven <alster@vinterdalen.se>
>Date: Mon, 4 Nov 2024 18:17:03 +0400
>Subject: [PATCH] biology/abyss: update 2.3.9 â 2.3.10
>MIME-Version: 1.0
>Content-Type: text/plain; charset=UTF-8
>Content-Transfer-Encoding: 8bit
>
>---
> biology/abyss/Makefile | 13 +++++++------
> biology/abyss/distinfo |  6 +++---
> 2 files changed, 10 insertions(+), 9 deletions(-)
>
>diff --git a/biology/abyss/Makefile b/biology/abyss/Makefile
>index 9f4072a59815..866362583846 100644
>--- a/biology/abyss/Makefile
>+++ b/biology/abyss/Makefile
>@@ -1,10 +1,10 @@
> PORTNAME=	abyss
>-DISTVERSION=	2.3.9
>+DISTVERSION=	2.3.10
> CATEGORIES=	biology
> 
> MAINTAINER=	yuri@FreeBSD.org
> COMMENT=	Assembly By Short Sequences: parallel, paired-end sequence assembler
>-WWW=		https://www.bcgsc.ca/resources/software/abyss
>+WWW=		https://www.bcgsc.ca/resources/software/abyss/
> 
> LICENSE=	GPLv3
> LICENSE_FILE=	${WRKSRC}/LICENSE
>@@ -33,15 +33,16 @@ make_CMD=	${PREFIX}/bin/gmake
> 
> GNU_CONFIGURE=	yes
> CONFIGURE_ARGS=	--without-sparsehash # configure fails to find std::hash, reported to the ML: https://groups.google.com/forum/#!topic/trans-abyss/SZDBKR5bKxs
>-GNU_CONFIGURE_MANPREFIX=	${PREFIX}/share
> 
>-TEST_TARGET=	check # tests fail to compile, see https://github.com/bcgsc/abyss/issues/453
>+TEST_TARGET=	check
> 
>-OPTIONS_DEFINE=	DOCS
>+PORTSCOUT=	limit:^[0-9\.]*$$ # to ignore alpha-numeric tags
> 
> PORTDOCS=	*
> 
>-PORTSCOUT=	limit:^[0-9\.]*$$ # to ignore alpha-numeric tags
>+OPTIONS_DEFINE=	DOCS
>+
>+TESTING_UNSAFE=	yes # tests fail to compile, see https://github.com/bcgsc/abyss/issues/453
> 
> .include <bsd.port.pre.mk>
> 
>diff --git a/biology/abyss/distinfo b/biology/abyss/distinfo
>index c57848eae017..9846a81f350c 100644
>--- a/biology/abyss/distinfo
>+++ b/biology/abyss/distinfo
>@@ -1,3 +1,3 @@
>-TIMESTAMP = 1726117023
>-SHA256 (bcgsc-abyss-2.3.9_GH0.tar.gz) = 68e0bb05526a1daaeea91e036fb227e7adde938fa2eeaa7c7225997c00e367d5
>-SIZE (bcgsc-abyss-2.3.9_GH0.tar.gz) = 1323783
>+TIMESTAMP = 1730727252
>+SHA256 (bcgsc-abyss-2.3.10_GH0.tar.gz) = 08ff30002113280ae75228eb1e29cf835318c7ef783ccf24fbe7350d49b4043c
>+SIZE (bcgsc-abyss-2.3.10_GH0.tar.gz) = 1323490
>-- 
>2.47.0
>

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alster: maintainer-approval? (yuri)

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Attachments on bug 282540: 254932