Index: biology/migrate/Makefile
===================================================================
RCS file: /home/ncvs/ports/biology/migrate/Makefile,v
retrieving revision 1.4
diff -u -r1.4 Makefile
--- biology/migrate/Makefile	23 Feb 2004 03:59:05 -0000	1.4
+++ biology/migrate/Makefile	1 Jun 2004 00:16:55 -0000
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	migrate
-PORTVERSION=	1.2.4
+PORTVERSION=	1.7.6.1
 CATEGORIES=	biology
 MASTER_SITES=	ftp://evolution.genetics.washington.edu/pub/lamarc/migrate/
 DISTNAME=	${PORTNAME}-${PORTVERSION}.src
@@ -14,22 +14,32 @@
 MAINTAINER=	wjv@FreeBSD.org
 COMMENT=	A program to estimate population sizes and migration rates
 
-WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}
-CONFIGURE_WRKSRC=	${WRKSRC}/src
-BUILD_WRKSRC=	${CONFIGURE_WRKSRC}
-INSTALL_WRKSRC=	${CONFIGURE_WRKSRC}
+WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}/src
 GNU_CONFIGURE=	yes
+CONFIGURE_TARGET=	--build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
 
 MAN1=		migrate.1
+MLINKS=		migrate.1 migrate-n.1
 
-post-install:
+DOCS=		HISTORY HOWTO-PARALLEL README migrate.html
+EXAMPLES=	README infile.benchmark infile.ep infile.msat infile.seq \
+		parmfile parmfile.benchmark parmfile.ep parmfile.msat \
+		parmfile.seq
+
+do-install:
+	@ ${INSTALL_PROGRAM} ${WRKSRC}/migrate-n ${PREFIX}/bin
 	@ cd ${PREFIX}/bin && ${LN} -s migrate-n migrate
+	@ ${INSTALL_MAN} ${WRKSRC}/migrate.1 ${MAN1PREFIX}/man/man1
 .if !defined(NOPORTDOCS)
 	@ ${MKDIR} ${DOCSDIR}/graphics
-.for docfile in HISTORY HOWTO-PARALLEL README migrate.html
-	@ ${INSTALL_DATA} ${WRKSRC}/${docfile} ${DOCSDIR}
+.for file in ${DOCS}
+	@ ${INSTALL_DATA} ${WRKSRC}/../${file} ${DOCSDIR}
+.endfor
+	@ ${MKDIR} ${EXAMPLESDIR}
+.for file in ${EXAMPLES}
+	@ ${INSTALL_DATA} ${WRKSRC}/../example/${file} ${EXAMPLESDIR}
 .endfor
-	@ ${INSTALL_DATA} ${WRKSRC}/graphics/* ${DOCSDIR}/graphics
+	@ ${INSTALL_DATA} ${WRKSRC}/../graphics/* ${DOCSDIR}/graphics
 .endif
 
 .include <bsd.port.pre.mk>
Index: biology/migrate/distinfo
===================================================================
RCS file: /home/ncvs/ports/biology/migrate/distinfo,v
retrieving revision 1.3
diff -u -r1.3 distinfo
--- biology/migrate/distinfo	31 Mar 2004 03:06:19 -0000	1.3
+++ biology/migrate/distinfo	31 May 2004 22:48:00 -0000
@@ -1,2 +1,2 @@
-MD5 (migrate-1.2.4.src.tar.gz) = d5b90497336bee7d559ac3a654043e13
-SIZE (migrate-1.2.4.src.tar.gz) = 312245
+MD5 (migrate-1.7.6.1.src.tar.gz) = 5e8f03923ca2a12e7d3dd460c17679a1
+SIZE (migrate-1.7.6.1.src.tar.gz) = 384925
Index: biology/migrate/pkg-plist
===================================================================
RCS file: /home/ncvs/ports/biology/migrate/pkg-plist,v
retrieving revision 1.2
diff -u -r1.2 pkg-plist
--- biology/migrate/pkg-plist	22 Oct 2003 09:29:51 -0000	1.2
+++ biology/migrate/pkg-plist	31 May 2004 23:45:34 -0000
@@ -8,5 +8,16 @@
 %%PORTDOCS%%%%DOCSDIR%%/graphics/migrate.gif
 %%PORTDOCS%%%%DOCSDIR%%/graphics/packet.gif
 %%PORTDOCS%%%%DOCSDIR%%/migrate.html
+%%PORTDOCS%%%%EXAMPLESDIR%%/README
+%%PORTDOCS%%%%EXAMPLESDIR%%/infile.benchmark
+%%PORTDOCS%%%%EXAMPLESDIR%%/infile.ep
+%%PORTDOCS%%%%EXAMPLESDIR%%/infile.msat
+%%PORTDOCS%%%%EXAMPLESDIR%%/infile.seq
+%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile
+%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile.benchmark
+%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile.ep
+%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile.msat
+%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile.seq
+%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/graphics
 %%PORTDOCS%%@dirrm %%DOCSDIR%%
Index: biology/migrate/files/patch-Makefile.in
===================================================================
RCS file: biology/migrate/files/patch-Makefile.in
diff -N biology/migrate/files/patch-Makefile.in
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ biology/migrate/files/patch-Makefile.in	1 Jun 2004 00:20:44 -0000
@@ -0,0 +1,11 @@
+--- Makefile.in.orig	Mon May 10 15:58:32 2004
++++ Makefile.in	Tue Jun  1 01:44:25 2004
+@@ -39,7 +39,7 @@
+ COMMONFLAGS =  -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DNEWSTYLE
+ #COMMONFLAGS =  -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DNEWSTYLE -DMERSENNE_TWISTER
+ COMMONVFLAGS =  $(COMMONFLAGS)
+-CFLAGS = @CFLAGS@ $(COMMONVFLAGS)  -DMIGRATEVERSION=\"\\\" $(MIGRATEVERSION)\\\"\"
++CFLAGS += @CFLAGS@ $(COMMONVFLAGS)  -DMIGRATEVERSION=\"\\\" $(MIGRATEVERSION)\\\"\"
+ # IBM PowerPC compiler on macosx needs also CC=xlc
+ #CFLAGS = -O3 -Q -qunroll -qalloca -qhot -qipa -qthreaded -Dpowerpc $(COMMONVFLAGS)  -DMIGRATEVERSION=\"\\\" $(MIGRATEVERSION)\\\"\"
+ THREADCFLAGS= @THREADCFLAGS@