Attachment 43423 Details for Bug 67429 – biology::migrate-1.7.6.1.patch

[patch] biology::migrate-1.7.6.1.patch

biology::migrate-1.7.6.1.patch (text/plain), 4.42 KB, created by Roman Neuhauser on 2004-06-01 01:30:21 UTC

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Creator: Roman Neuhauser

Created: 2004-06-01 01:30:21 UTC

Size: 4.42 KB

patch

obsolete

>Index: biology/migrate/Makefile
>===================================================================
>RCS file: /home/ncvs/ports/biology/migrate/Makefile,v
>retrieving revision 1.4
>diff -u -r1.4 Makefile
>--- biology/migrate/Makefile	23 Feb 2004 03:59:05 -0000	1.4
>+++ biology/migrate/Makefile	1 Jun 2004 00:16:55 -0000
>@@ -6,7 +6,7 @@
> #
> 
> PORTNAME=	migrate
>-PORTVERSION=	1.2.4
>+PORTVERSION=	1.7.6.1
> CATEGORIES=	biology
> MASTER_SITES=	ftp://evolution.genetics.washington.edu/pub/lamarc/migrate/
> DISTNAME=	${PORTNAME}-${PORTVERSION}.src
>@@ -14,22 +14,32 @@
> MAINTAINER=	wjv@FreeBSD.org
> COMMENT=	A program to estimate population sizes and migration rates
> 
>-WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}
>-CONFIGURE_WRKSRC=	${WRKSRC}/src
>-BUILD_WRKSRC=	${CONFIGURE_WRKSRC}
>-INSTALL_WRKSRC=	${CONFIGURE_WRKSRC}
>+WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}/src
> GNU_CONFIGURE=	yes
>+CONFIGURE_TARGET=	--build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
> 
> MAN1=		migrate.1
>+MLINKS=		migrate.1 migrate-n.1
> 
>-post-install:
>+DOCS=		HISTORY HOWTO-PARALLEL README migrate.html
>+EXAMPLES=	README infile.benchmark infile.ep infile.msat infile.seq \
>+		parmfile parmfile.benchmark parmfile.ep parmfile.msat \
>+		parmfile.seq
>+
>+do-install:
>+	@ ${INSTALL_PROGRAM} ${WRKSRC}/migrate-n ${PREFIX}/bin
> 	@ cd ${PREFIX}/bin && ${LN} -s migrate-n migrate
>+	@ ${INSTALL_MAN} ${WRKSRC}/migrate.1 ${MAN1PREFIX}/man/man1
> .if !defined(NOPORTDOCS)
> 	@ ${MKDIR} ${DOCSDIR}/graphics
>-.for docfile in HISTORY HOWTO-PARALLEL README migrate.html
>-	@ ${INSTALL_DATA} ${WRKSRC}/${docfile} ${DOCSDIR}
>+.for file in ${DOCS}
>+	@ ${INSTALL_DATA} ${WRKSRC}/../${file} ${DOCSDIR}
>+.endfor
>+	@ ${MKDIR} ${EXAMPLESDIR}
>+.for file in ${EXAMPLES}
>+	@ ${INSTALL_DATA} ${WRKSRC}/../example/${file} ${EXAMPLESDIR}
> .endfor
>-	@ ${INSTALL_DATA} ${WRKSRC}/graphics/* ${DOCSDIR}/graphics
>+	@ ${INSTALL_DATA} ${WRKSRC}/../graphics/* ${DOCSDIR}/graphics
> .endif
> 
> .include <bsd.port.pre.mk>
>Index: biology/migrate/distinfo
>===================================================================
>RCS file: /home/ncvs/ports/biology/migrate/distinfo,v
>retrieving revision 1.3
>diff -u -r1.3 distinfo
>--- biology/migrate/distinfo	31 Mar 2004 03:06:19 -0000	1.3
>+++ biology/migrate/distinfo	31 May 2004 22:48:00 -0000
>@@ -1,2 +1,2 @@
>-MD5 (migrate-1.2.4.src.tar.gz) = d5b90497336bee7d559ac3a654043e13
>-SIZE (migrate-1.2.4.src.tar.gz) = 312245
>+MD5 (migrate-1.7.6.1.src.tar.gz) = 5e8f03923ca2a12e7d3dd460c17679a1
>+SIZE (migrate-1.7.6.1.src.tar.gz) = 384925
>Index: biology/migrate/pkg-plist
>===================================================================
>RCS file: /home/ncvs/ports/biology/migrate/pkg-plist,v
>retrieving revision 1.2
>diff -u -r1.2 pkg-plist
>--- biology/migrate/pkg-plist	22 Oct 2003 09:29:51 -0000	1.2
>+++ biology/migrate/pkg-plist	31 May 2004 23:45:34 -0000
>@@ -8,5 +8,16 @@
> %%PORTDOCS%%%%DOCSDIR%%/graphics/migrate.gif
> %%PORTDOCS%%%%DOCSDIR%%/graphics/packet.gif
> %%PORTDOCS%%%%DOCSDIR%%/migrate.html
>+%%PORTDOCS%%%%EXAMPLESDIR%%/README
>+%%PORTDOCS%%%%EXAMPLESDIR%%/infile.benchmark
>+%%PORTDOCS%%%%EXAMPLESDIR%%/infile.ep
>+%%PORTDOCS%%%%EXAMPLESDIR%%/infile.msat
>+%%PORTDOCS%%%%EXAMPLESDIR%%/infile.seq
>+%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile
>+%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile.benchmark
>+%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile.ep
>+%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile.msat
>+%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile.seq
>+%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%
> %%PORTDOCS%%@dirrm %%DOCSDIR%%/graphics
> %%PORTDOCS%%@dirrm %%DOCSDIR%%
>Index: biology/migrate/files/patch-Makefile.in
>===================================================================
>RCS file: biology/migrate/files/patch-Makefile.in
>diff -N biology/migrate/files/patch-Makefile.in
>--- /dev/null	1 Jan 1970 00:00:00 -0000
>+++ biology/migrate/files/patch-Makefile.in	1 Jun 2004 00:20:44 -0000
>@@ -0,0 +1,11 @@
>+--- Makefile.in.orig	Mon May 10 15:58:32 2004
>++++ Makefile.in	Tue Jun  1 01:44:25 2004
>+@@ -39,7 +39,7 @@
>+ COMMONFLAGS =  -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DNEWSTYLE
>+ #COMMONFLAGS =  -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DNEWSTYLE -DMERSENNE_TWISTER
>+ COMMONVFLAGS =  $(COMMONFLAGS)
>+-CFLAGS = @CFLAGS@ $(COMMONVFLAGS)  -DMIGRATEVERSION=\"\\\" $(MIGRATEVERSION)\\\"\"
>++CFLAGS += @CFLAGS@ $(COMMONVFLAGS)  -DMIGRATEVERSION=\"\\\" $(MIGRATEVERSION)\\\"\"
>+ # IBM PowerPC compiler on macosx needs also CC=xlc
>+ #CFLAGS = -O3 -Q -qunroll -qalloca -qhot -qipa -qthreaded -Dpowerpc $(COMMONVFLAGS)  -DMIGRATEVERSION=\"\\\" $(MIGRATEVERSION)\\\"\"
>+ THREADCFLAGS= @THREADCFLAGS@

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Attachments on bug 67429: 43423