FreeBSD Bugzilla – Attachment 50092 Details for
Bug 76379
New port:biology/p5-Bio-Das
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file.shar
file.shar (text/plain), 7.78 KB, created by
Razi Khaja
on 2005-01-17 22:40:20 UTC
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Description:
file.shar
Filename:
MIME Type:
Creator:
Razi Khaja
Created:
2005-01-17 22:40:20 UTC
Size:
7.78 KB
patch
obsolete
># This is a shell archive. Save it in a file, remove anything before ># this line, and then unpack it by entering "sh file". Note, it may ># create directories; files and directories will be owned by you and ># have default permissions. ># ># This archive contains: ># ># p5-Bio-Das ># p5-Bio-Das/Makefile ># p5-Bio-Das/pkg-descr ># p5-Bio-Das/distinfo ># p5-Bio-Das/pkg-plist ># >echo c - p5-Bio-Das >mkdir -p p5-Bio-Das > /dev/null 2>&1 >echo x - p5-Bio-Das/Makefile >sed 's/^X//' >p5-Bio-Das/Makefile << 'END-of-p5-Bio-Das/Makefile' >X# New ports collection makefile for: p5-Bio-Das >X# Date created: 17 January 2005 >X# Whom: Razi Khaja <razi@genet.sickkids.on.ca> >X# >X# $FreeBSD$ >X# >X >XPORTNAME= Bio-Das >XPORTVERSION= 0.99 >XCATEGORIES= biology >XMASTER_SITES= http://www.biodas.org/download/Bio::Das/ \ >X ${MASTER_SITE_PERL_CPAN} >XPKGNAMEPREFIX= p5- >X >XMAINTAINER= razi@genet.sickkids.on.ca >XCOMMENT= Client-side library for Distributed Genome Annotation System >X >XBUILD_DEPENDS= ${SITE_PERL}/${PERL_ARCH}/Compress/Zlib.pm:${PORTSDIR}/archivers/p5-Compress-Zlib \ >X ${SITE_PERL}/${PERL_ARCH}/HTML/Parser.pm:${PORTSDIR}/www/p5-HTML-Parser \ >X ${SITE_PERL}/LWP/UserAgent.pm:${PORTSDIR}/www/p5-libwww \ >X ${SITE_PERL}/${PERL_ARCH}/MIME/Base64.pm:${PORTSDIR}/converters/p5-MIME-Base64 \ >X ${SITE_PERL}/Bio/Root/Root.pm:${PORTSDIR}/biology/p5-bioperl >X >XRUN_DEPENDS= ${BUILD_DEPENDS} >X >XPERL_CONFIGURE= YES >X >XMAN3= Bio::Das.3 \ >X Bio::Das::AGPServer::Config.3 \ >X Bio::Das::AGPServer::Daemon.3 \ >X Bio::Das::AGPServer::Parser.3 \ >X Bio::Das::AGPServer::SQLStorage.3 \ >X Bio::Das::AGPServer::SQLStorage::CSV::DB.3 \ >X Bio::Das::AGPServer::SQLStorage::MySQL::DB.3 \ >X Bio::Das::DSN.3 \ >X Bio::Das::Feature.3 \ >X Bio::Das::FeatureIterator.3 \ >X Bio::Das::HTTP::Fetch.3 \ >X Bio::Das::Map.3 \ >X Bio::Das::ProServer::Config.3 \ >X Bio::Das::ProServer::Daemon.3 \ >X Bio::Das::ProServer::Loader::agp.3 \ >X Bio::Das::ProServer::SourceAdaptor.3 \ >X Bio::Das::ProServer::SourceAdaptor::Transport::dbi.3 \ >X Bio::Das::ProServer::SourceAdaptor::Transport::file.3 \ >X Bio::Das::ProServer::SourceAdaptor::Transport::generic.3 \ >X Bio::Das::ProServer::SourceAdaptor::Transport::getz.3 \ >X Bio::Das::ProServer::SourceAdaptor::Transport::getzc.3 \ >X Bio::Das::ProServer::SourceAdaptor::Transport::oracle.3 \ >X Bio::Das::ProServer::SourceAdaptor::agp.3 \ >X Bio::Das::ProServer::SourceAdaptor::cosmic.3 \ >X Bio::Das::ProServer::SourceAdaptor::gensat.3 \ >X Bio::Das::ProServer::SourceAdaptor::haplotype.3 \ >X Bio::Das::ProServer::SourceAdaptor::image.3 \ >X Bio::Das::ProServer::SourceAdaptor::interpro.3 \ >X Bio::Das::ProServer::SourceAdaptor::simple.3 \ >X Bio::Das::ProServer::SourceAdaptor::snp.3 \ >X Bio::Das::ProServer::SourceAdaptor::sts.3 \ >X Bio::Das::ProServer::SourceAdaptor::swissprot.3 \ >X Bio::Das::ProServer::SourceAdaptor::trace.3 \ >X Bio::Das::Request.3 \ >X Bio::Das::Request::Dnas.3 \ >X Bio::Das::Request::Dsn.3 \ >X Bio::Das::Request::Entry_points.3 \ >X Bio::Das::Request::Feature2Segments.3 \ >X Bio::Das::Request::Stylesheet.3 \ >X Bio::Das::Request::Types.3 \ >X Bio::Das::Segment.3 \ >X Bio::Das::Stylesheet.3 \ >X Bio::Das::Type.3 \ >X Bio::Das::TypeHandler.3 \ >X Bio::Das::Util.3 >X >X.include <bsd.port.mk> >END-of-p5-Bio-Das/Makefile >echo x - p5-Bio-Das/pkg-descr >sed 's/^X//' >p5-Bio-Das/pkg-descr << 'END-of-p5-Bio-Das/pkg-descr' >XBio::Das provides access to genome sequencing and annotation databases >Xthat export their data in Distributed Annotation System (DAS) format >Xversion 1.5. This system is described at http://biodas.org. Both >Xunencrypted (http:) and SSL-encrypted (https:) DAS servers are sup- >Xported. (To run SSL, you will need IO::Socket::SSL and Net::SSLeay >Xinstalled). >X >XWWW: http://www.biodas.org >X >X-- Razi Khaja <razi@genet.sickkids.on.ca> >END-of-p5-Bio-Das/pkg-descr >echo x - p5-Bio-Das/distinfo >sed 's/^X//' >p5-Bio-Das/distinfo << 'END-of-p5-Bio-Das/distinfo' >XMD5 (Bio-Das-0.99.tar.gz) = fc9f965815603b4de148a7f46e3bce4e >XSIZE (Bio-Das-0.99.tar.gz) = 124838 >END-of-p5-Bio-Das/distinfo >echo x - p5-Bio-Das/pkg-plist >sed 's/^X//' >p5-Bio-Das/pkg-plist << 'END-of-p5-Bio-Das/pkg-plist' >Xlib/perl5/site_perl/5.8.5/Bio/Das.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/AGPServer/Config.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/AGPServer/Daemon.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/AGPServer/Parser.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/AGPServer/Proxy.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/AGPServer/SQLStorage.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/AGPServer/SQLStorage/CSV/DB.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/AGPServer/SQLStorage/MySQL/DB.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/DSN.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/Feature.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/FeatureIterator.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/HTTP/Fetch.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/Map.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/Config.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/Daemon.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/Loader/agp.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/Transport/bioseqio.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/Transport/dbi.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/Transport/file.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/Transport/generic.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/Transport/getz.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/Transport/getzc.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/Transport/oracle.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/Transport/wgetz.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/agp.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/bioseq.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/cosmic.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/gensat.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/haplotype.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/image.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/interpro.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/simple.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/snp.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/sts.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/swissprot.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/trace.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/Request.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/Request/Dnas.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/Request/Dsn.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/Request/Entry_points.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/Request/Feature2Segments.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/Request/Features.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/Request/Stylesheet.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/Request/Types.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/Segment.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/Stylesheet.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/Type.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/TypeHandler.pm >Xlib/perl5/site_perl/5.8.5/Bio/Das/Util.pm >Xlib/perl5/site_perl/5.8.5/mach/auto/Bio/Das/.packlist >Xshare/nls/POSIX >Xshare/nls/en_US.US-ASCII >X@dirrm lib/perl5/site_perl/5.8.5/mach/auto/Bio/Das >X@dirrm lib/perl5/site_perl/5.8.5/Bio/Das/Request >X@dirrm lib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor/Transport >X@dirrm lib/perl5/site_perl/5.8.5/Bio/Das/ProServer/SourceAdaptor >X@dirrm lib/perl5/site_perl/5.8.5/Bio/Das/ProServer/Loader >X@dirrm lib/perl5/site_perl/5.8.5/Bio/Das/ProServer >X@dirrm lib/perl5/site_perl/5.8.5/Bio/Das/HTTP >X@dirrm lib/perl5/site_perl/5.8.5/Bio/Das/AGPServer/SQLStorage/MySQL >X@dirrm lib/perl5/site_perl/5.8.5/Bio/Das/AGPServer/SQLStorage/CSV >X@dirrm lib/perl5/site_perl/5.8.5/Bio/Das/AGPServer/SQLStorage >X@dirrm lib/perl5/site_perl/5.8.5/Bio/Das/AGPServer >X >END-of-p5-Bio-Das/pkg-plist >exit
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bug 76379
: 50092