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(-)afni/Makefile (-8 / +13 lines)
Lines 3-9 Link Here
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# Date created:        11 Jan 2005
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# Date created:        11 Jan 2005
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# Whom:                bacon@smithers.neuro.mcw.edu
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# Whom:                bacon@smithers.neuro.mcw.edu
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#
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#
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# $FreeBSD: ports/science/afni/Makefile,v 1.5 2006/04/15 18:24:01 arved Exp $
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# $FreeBSD: ports/science/afni/Makefile,v 1.4 2006/02/13 10:24:18 vd Exp $
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#
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#
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############################################################################
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############################################################################
Lines 16-28 Link Here
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# Makefile.BSD, which is included in the source distribution.
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# Makefile.BSD, which is included in the source distribution.
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PORTNAME=	afni
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PORTNAME=	afni
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PORTVERSION=	2005.12.30.0934.2
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PORTVERSION=	2006.03.21.1314
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CATEGORIES=	science biology graphics
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CATEGORIES=	science biology graphics
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MASTER_SITES=	http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/${PORTVERSION}/
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MASTER_SITES=	http://afni.nimh.nih.gov/pub/dist/tgz/ \
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DISTFILES=	afni_src.tgz afni_doc.tgz afni.1 \
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		http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/${PORTVERSION}/
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		Makefile.FreeBSD_PORT TTatlas+tlrc.BRIK.gz TTatlas+tlrc.HEAD
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DISTFILES=	afni_src.tgz afni_doc.tgz afni.1 Makefile.FreeBSD_PORT \
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		TTatlas+tlrc.BRIK.gz TTatlas+tlrc.HEAD CA_EZ_v1.3b-Mar1506.tgz
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DIST_SUBDIR=	AFNI-${PORTVERSION}
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DIST_SUBDIR=	AFNI-${PORTVERSION}
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EXTRACT_ONLY=	afni_src.tgz afni_doc.tgz
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EXTRACT_ONLY=	afni_src.tgz afni_doc.tgz CA_EZ_v1.3b-Mar1506.tgz
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MAINTAINER=	bacon@smithers.neuro.mcw.edu
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MAINTAINER=	bacon@smithers.neuro.mcw.edu
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COMMENT=	Advanced Functional Neuro Imaging
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COMMENT=	Advanced Functional Neuro Imaging
Lines 35-41 Link Here
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RUN_DEPENDS=	cjpeg:${PORTSDIR}/graphics/jpeg \
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RUN_DEPENDS=	cjpeg:${PORTSDIR}/graphics/jpeg \
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		mpeg_encode:${PORTSDIR}/multimedia/mpeg_encode \
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		mpeg_encode:${PORTSDIR}/multimedia/mpeg_encode \
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		whirlgif:${PORTSDIR}/graphics/whirlgif
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		whirlgif:${PORTSDIR}/graphics/whirlgif \
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		ppmtogif:${PORTSDIR}/graphics/netpbm
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USE_GETTEXT=	yes
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USE_GETTEXT=	yes
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USE_GMAKE=	yes
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USE_GMAKE=	yes
Lines 85-93 Link Here
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	@clip_volume \
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	@clip_volume \
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	@fix_FSsphere \
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	@fix_FSsphere \
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	@make_stim_file \
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	@make_stim_file \
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	@np \
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	@parse_afni_name \
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	@parse_afni_name \
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	@parse_name \
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	@parse_name \
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	suma_change_spec \
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	3dMax \
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	suma_change_spec
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PLIST_FILES+=	${SCRIPTS:S|^|bin/|}
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PLIST_FILES+=	${SCRIPTS:S|^|bin/|}
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Lines 122-127 Link Here
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.endfor
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.endfor
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	${INSTALL_PROGRAM} ${INSTALL_WRKSRC}/* ${PREFIX}/bin
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	${INSTALL_PROGRAM} ${INSTALL_WRKSRC}/* ${PREFIX}/bin
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	${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/TTatlas* ${DATADIR}
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	${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/TTatlas* ${DATADIR}
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	${INSTALL_DATA} ${WRKDIR}/CA_EZ_v1.3b-Mar1506/* ${DATADIR}
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	${INSTALL_MAN} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${PREFIX}/man/man1
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	${INSTALL_MAN} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${PREFIX}/man/man1
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	@${MV} ${INSTALL_TEMP}/* ${INSTALL_WRKSRC}
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	@${MV} ${INSTALL_TEMP}/* ${INSTALL_WRKSRC}
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.if !defined(NOPORTDOCS)
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.if !defined(NOPORTDOCS)
(-)afni/distinfo (-18 / +21 lines)
Lines 1-18 Link Here
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MD5 (AFNI-2005.12.30.0934.2/afni_src.tgz) = 3c711d3ba5295953f0e8acbb3062ab65
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MD5 (AFNI-2006.03.21.1314/afni_src.tgz) = 8af3ae355ba30d802ebc60a826ee5f6c
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SHA256 (AFNI-2005.12.30.0934.2/afni_src.tgz) = a7341ffa0f8725cd0c7bc3bd9ccb097d05ec5d56b60f92037a5f8a5e0d0e6316
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SHA256 (AFNI-2006.03.21.1314/afni_src.tgz) = 74a991f8689d4e717956d292552cb300fa574e33819941b7719b3390f9c9bfc3
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SIZE (AFNI-2005.12.30.0934.2/afni_src.tgz) = 10863304
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SIZE (AFNI-2006.03.21.1314/afni_src.tgz) = 10931595
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MD5 (AFNI-2005.12.30.0934.2/afni_doc.tgz) = 3b085de85fc46908652ae287d1cceb38
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MD5 (AFNI-2006.03.21.1314/afni_doc.tgz) = 3b085de85fc46908652ae287d1cceb38
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SHA256 (AFNI-2005.12.30.0934.2/afni_doc.tgz) = 28bfcb085d97f63a7e6b753d784908d7f90d9d3ba735d96b18c1e893af4d6cd1
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SHA256 (AFNI-2006.03.21.1314/afni_doc.tgz) = 28bfcb085d97f63a7e6b753d784908d7f90d9d3ba735d96b18c1e893af4d6cd1
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SIZE (AFNI-2005.12.30.0934.2/afni_doc.tgz) = 3267095
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SIZE (AFNI-2006.03.21.1314/afni_doc.tgz) = 3267095
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MD5 (AFNI-2005.12.30.0934.2/afni.1) = 39c9a1a39b207cd957f0f0d5ec220e4e
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MD5 (AFNI-2006.03.21.1314/afni.1) = 39c9a1a39b207cd957f0f0d5ec220e4e
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SHA256 (AFNI-2005.12.30.0934.2/afni.1) = f14991934a8b78f2497cd1d0f48b849c1a6debef01c666eafd70993ba63c99da
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SHA256 (AFNI-2006.03.21.1314/afni.1) = f14991934a8b78f2497cd1d0f48b849c1a6debef01c666eafd70993ba63c99da
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SIZE (AFNI-2005.12.30.0934.2/afni.1) = 1103
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SIZE (AFNI-2006.03.21.1314/afni.1) = 1103
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MD5 (AFNI-2005.12.30.0934.2/Makefile.FreeBSD_PORT) = 77fd9306b8e5c73c555edcf04aeaf562
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MD5 (AFNI-2006.03.21.1314/Makefile.FreeBSD_PORT) = 77fd9306b8e5c73c555edcf04aeaf562
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SHA256 (AFNI-2005.12.30.0934.2/Makefile.FreeBSD_PORT) = f29118dbe49cc95de62a6b3ca2b31cfae0017247854d764dc5e0069ed58f589b
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SHA256 (AFNI-2006.03.21.1314/Makefile.FreeBSD_PORT) = f29118dbe49cc95de62a6b3ca2b31cfae0017247854d764dc5e0069ed58f589b
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SIZE (AFNI-2005.12.30.0934.2/Makefile.FreeBSD_PORT) = 3101
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SIZE (AFNI-2006.03.21.1314/Makefile.FreeBSD_PORT) = 3101
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MD5 (AFNI-2005.12.30.0934.2/TTatlas+tlrc.BRIK.gz) = f5a107b049bc426af5342565f4e5beee
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MD5 (AFNI-2006.03.21.1314/TTatlas+tlrc.BRIK.gz) = f5a107b049bc426af5342565f4e5beee
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SHA256 (AFNI-2005.12.30.0934.2/TTatlas+tlrc.BRIK.gz) = 0b5b087006e07e05c5f0c8306acaade955924f744457cec0c00844cc2e9e67cd
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SHA256 (AFNI-2006.03.21.1314/TTatlas+tlrc.BRIK.gz) = 0b5b087006e07e05c5f0c8306acaade955924f744457cec0c00844cc2e9e67cd
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SIZE (AFNI-2005.12.30.0934.2/TTatlas+tlrc.BRIK.gz) = 159912
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SIZE (AFNI-2006.03.21.1314/TTatlas+tlrc.BRIK.gz) = 159912
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MD5 (AFNI-2005.12.30.0934.2/TTatlas+tlrc.HEAD) = a0ca787a2996d7e66548176808503ac5
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MD5 (AFNI-2006.03.21.1314/TTatlas+tlrc.HEAD) = a0ca787a2996d7e66548176808503ac5
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SHA256 (AFNI-2005.12.30.0934.2/TTatlas+tlrc.HEAD) = 51c3fb158990616f355fea56886fc7c85d80ac96779f5a65a8f69207c2a85919
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SHA256 (AFNI-2006.03.21.1314/TTatlas+tlrc.HEAD) = 51c3fb158990616f355fea56886fc7c85d80ac96779f5a65a8f69207c2a85919
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SIZE (AFNI-2005.12.30.0934.2/TTatlas+tlrc.HEAD) = 1750
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SIZE (AFNI-2006.03.21.1314/TTatlas+tlrc.HEAD) = 1750
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MD5 (AFNI-2006.03.21.1314/CA_EZ_v1.3b-Mar1506.tgz) = a66e4abb3385878a945351e761d12723
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SHA256 (AFNI-2006.03.21.1314/CA_EZ_v1.3b-Mar1506.tgz) = c9e884370a1580b1101c01f44cc76f81fc0fd64af7796b76762091ee9de4feed
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SIZE (AFNI-2006.03.21.1314/CA_EZ_v1.3b-Mar1506.tgz) = 2645818
(-)afni/pkg-message (+21 lines)
Line 0 Link Here
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=============================================================================
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Users must have ${PREFIX}/${AFNI}/bin in their PATH in order
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to run programs in the AFNI distribution.
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Documentation can be found in ${PREFIX}/${AFNI}/afni_doc.
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The environment variable AFNI_PLUGIN_PATH must also be set to 
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${PREFIX}/${AFNI}/bin in order to run AFNI plugins.
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Each user is advised to create a .afnirc file in their home directory
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to customize settings.
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For questions or comments regarding the FreeBSD port, please contact the
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port maintainer: 
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bacon@smithers.neuro.mcw.edu
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For AFNI configuration and usage, please visit the AFNI WEB site at 
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http://afni.nimh.nih.gov.
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=============================================================================
(-)afni/pkg-plist (-2 / +20 lines)
Lines 3-8 Link Here
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bin/1deval
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bin/1deval
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bin/1dfft
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bin/1dfft
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bin/1dgrayplot
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bin/1dgrayplot
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bin/1dmatcalc
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bin/1dnorm
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bin/1dnorm
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bin/1dplot
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bin/1dplot
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bin/1dsum
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bin/1dsum
Lines 11-17 Link Here
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bin/24swap
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bin/24swap
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bin/2dImReg
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bin/2dImReg
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bin/2swap
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bin/2swap
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bin/3T_toafni
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bin/3dAFNIto3D
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bin/3dAFNIto3D
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bin/3dAFNItoANALYZE
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bin/3dAFNItoANALYZE
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bin/3dAFNItoMINC
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bin/3dAFNItoMINC
Lines 29-34 Link Here
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bin/3dAutobox
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bin/3dAutobox
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bin/3dAutomask
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bin/3dAutomask
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bin/3dBRAIN_VOYAGERtoAFNI
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bin/3dBRAIN_VOYAGERtoAFNI
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bin/3dBrickStat
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bin/3dCM
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bin/3dCM
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bin/3dCRUISEtoAFNI
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bin/3dCRUISEtoAFNI
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bin/3dClipLevel
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bin/3dClipLevel
Lines 47-58 Link Here
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bin/3dFriedman
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bin/3dFriedman
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bin/3dGetrow
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bin/3dGetrow
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bin/3dIntracranial
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bin/3dIntracranial
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bin/3dInvFMRI
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bin/3dKruskalWallis
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bin/3dKruskalWallis
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bin/3dLRflip
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bin/3dLRflip
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bin/3dLocalstat
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bin/3dLocalstat
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bin/3dMINCtoAFNI
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bin/3dMINCtoAFNI
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bin/3dMannWhitney
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bin/3dMannWhitney
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bin/3dMax
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bin/3dMean
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bin/3dMean
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bin/3dMedianFilter
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bin/3dMedianFilter
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bin/3dNLfim
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bin/3dNLfim
Lines 76-81 Link Here
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bin/3dTshift
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bin/3dTshift
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bin/3dTsmooth
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bin/3dTsmooth
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bin/3dTstat
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bin/3dTstat
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bin/3dTwotoComplex
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bin/3dUndump
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bin/3dUndump
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bin/3dUniformize
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bin/3dUniformize
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bin/3dVol2Surf
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bin/3dVol2Surf
Lines 106-111 Link Here
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bin/3dinfo
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bin/3dinfo
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bin/3dmaskave
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bin/3dmaskave
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bin/3dmaskdump
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bin/3dmaskdump
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bin/3dmatcalc
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bin/3dmaxima
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bin/3dmaxima
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bin/3dmerge
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bin/3dmerge
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bin/3dnewid
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bin/3dnewid
Lines 309-314 Link Here
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lib/plug_volreg.so
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lib/plug_volreg.so
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lib/plug_wavelets.so
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lib/plug_wavelets.so
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lib/plug_zeropad.so
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lib/plug_zeropad.so
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%%DATADIR%%/Dist_Stamp
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%%DATADIR%%/Readme_dist
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%%DATADIR%%/TT_N27+tlrc.BRIK.gz
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%%DATADIR%%/TT_N27+tlrc.HEAD
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%%DATADIR%%/TT_N27_CA_EZ_MPM+tlrc.BRIK.gz
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%%DATADIR%%/TT_N27_CA_EZ_MPM+tlrc.HEAD
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%%DATADIR%%/TT_N27_CA_EZ_PMaps+tlrc.BRIK.gz
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%%DATADIR%%/TT_N27_CA_EZ_PMaps+tlrc.HEAD
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%%DATADIR%%/TT_N27_EZ_LR+tlrc.BRIK.gz
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%%DATADIR%%/TT_N27_EZ_LR+tlrc.HEAD
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%%DATADIR%%/TT_N27_EZ_ML+tlrc.BRIK.gz
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%%DATADIR%%/TT_N27_EZ_ML+tlrc.HEAD
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%%DATADIR%%/TTatlas+tlrc.BRIK.gz
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%%DATADIR%%/TTatlas+tlrc.BRIK.gz
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%%DATADIR%%/TTatlas+tlrc.HEAD
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%%DATADIR%%/TTatlas+tlrc.HEAD
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%%DATADIR%%/face_JimEliassen.jpg
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%%DATADIR%%/face_JimEliassen.jpg
Lines 341-346 Link Here
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%%DATADIR%%/face_claudio.jpg
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%%DATADIR%%/face_claudio.jpg
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%%DATADIR%%/face_cmoritz.jpg
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%%DATADIR%%/face_cmoritz.jpg
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%%DATADIR%%/face_cmyers.jpg
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%%DATADIR%%/face_cmyers.jpg
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%%DATADIR%%/face_cscholl.jpg
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%%DATADIR%%/face_csenior.jpg
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%%DATADIR%%/face_csenior.jpg
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%%DATADIR%%/face_cwettig.jpg
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%%DATADIR%%/face_cwettig.jpg
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%%DATADIR%%/face_dglen.jpg
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%%DATADIR%%/face_dglen.jpg
Lines 376-386 Link Here
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%%DATADIR%%/face_kropella.jpg
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%%DATADIR%%/face_kropella.jpg
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%%DATADIR%%/face_kschreiber.jpg
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%%DATADIR%%/face_kschreiber.jpg
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%%DATADIR%%/face_kuba.jpg
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%%DATADIR%%/face_kuba.jpg
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%%DATADIR%%/face_kylesimmons.jpg
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%%DATADIR%%/face_lask.jpg
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%%DATADIR%%/face_lask.jpg
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%%DATADIR%%/face_laura.jpg
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%%DATADIR%%/face_laura.jpg
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%%DATADIR%%/face_lincoln1.jpg
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%%DATADIR%%/face_lincoln1.jpg
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%%DATADIR%%/face_lincoln2.jpg
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%%DATADIR%%/face_lincoln2.jpg
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%%DATADIR%%/face_lindachao.jpg
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%%DATADIR%%/face_lindachao.jpg
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%%DATADIR%%/face_lisaeyler.jpg
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%%DATADIR%%/face_lizyoder.jpg
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%%DATADIR%%/face_lizyoder.jpg
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%%DATADIR%%/face_ljcox.jpg
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%%DATADIR%%/face_ljcox.jpg
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%%DATADIR%%/face_llatour.jpg
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%%DATADIR%%/face_llatour.jpg

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