Attachment 65782 Details for Bug 97404 – file.diff

[patch] file.diff

file.diff (text/plain), 8.69 KB, created by Jason Bacon on 2006-05-17 17:00:40 UTC

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Creator: Jason Bacon

Created: 2006-05-17 17:00:40 UTC

Size: 8.69 KB

patch

obsolete

>diff -ruN /usr/ports/science/afni/Makefile afni/Makefile
>--- /usr/ports/science/afni/Makefile	Sat Apr 15 13:24:01 2006
>+++ afni/Makefile	Thu May  4 12:16:03 2006
>@@ -3,7 +3,7 @@
> # Date created:        11 Jan 2005
> # Whom:                bacon@smithers.neuro.mcw.edu
> #
>-# $FreeBSD: ports/science/afni/Makefile,v 1.5 2006/04/15 18:24:01 arved Exp $
>+# $FreeBSD: ports/science/afni/Makefile,v 1.4 2006/02/13 10:24:18 vd Exp $
> #
> 
> ############################################################################
>@@ -16,13 +16,14 @@
> # Makefile.BSD, which is included in the source distribution.
> 
> PORTNAME=	afni
>-PORTVERSION=	2005.12.30.0934.2
>+PORTVERSION=	2006.03.21.1314
> CATEGORIES=	science biology graphics
>-MASTER_SITES=	http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/${PORTVERSION}/
>-DISTFILES=	afni_src.tgz afni_doc.tgz afni.1 \
>-		Makefile.FreeBSD_PORT TTatlas+tlrc.BRIK.gz TTatlas+tlrc.HEAD
>+MASTER_SITES=	http://afni.nimh.nih.gov/pub/dist/tgz/ \
>+		http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/${PORTVERSION}/
>+DISTFILES=	afni_src.tgz afni_doc.tgz afni.1 Makefile.FreeBSD_PORT \
>+		TTatlas+tlrc.BRIK.gz TTatlas+tlrc.HEAD CA_EZ_v1.3b-Mar1506.tgz
> DIST_SUBDIR=	AFNI-${PORTVERSION}
>-EXTRACT_ONLY=	afni_src.tgz afni_doc.tgz
>+EXTRACT_ONLY=	afni_src.tgz afni_doc.tgz CA_EZ_v1.3b-Mar1506.tgz
> 
> MAINTAINER=	bacon@smithers.neuro.mcw.edu
> COMMENT=	Advanced Functional Neuro Imaging
>@@ -35,7 +36,8 @@
> 
> RUN_DEPENDS=	cjpeg:${PORTSDIR}/graphics/jpeg \
> 		mpeg_encode:${PORTSDIR}/multimedia/mpeg_encode \
>-		whirlgif:${PORTSDIR}/graphics/whirlgif
>+		whirlgif:${PORTSDIR}/graphics/whirlgif \
>+		ppmtogif:${PORTSDIR}/graphics/netpbm
> 
> USE_GETTEXT=	yes
> USE_GMAKE=	yes
>@@ -85,9 +87,11 @@
> 	@clip_volume \
> 	@fix_FSsphere \
> 	@make_stim_file \
>+	@np \
> 	@parse_afni_name \
> 	@parse_name \
>-	suma_change_spec \
>+	3dMax \
>+	suma_change_spec
> 
> PLIST_FILES+=	${SCRIPTS:S|^|bin/|}
> 
>@@ -122,6 +126,7 @@
> .endfor
> 	${INSTALL_PROGRAM} ${INSTALL_WRKSRC}/* ${PREFIX}/bin
> 	${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/TTatlas* ${DATADIR}
>+	${INSTALL_DATA} ${WRKDIR}/CA_EZ_v1.3b-Mar1506/* ${DATADIR}
> 	${INSTALL_MAN} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${PREFIX}/man/man1
> 	@${MV} ${INSTALL_TEMP}/* ${INSTALL_WRKSRC}
> .if !defined(NOPORTDOCS)
>diff -ruN /usr/ports/science/afni/distinfo afni/distinfo
>--- /usr/ports/science/afni/distinfo	Sat Apr 15 13:24:01 2006
>+++ afni/distinfo	Wed May 17 10:42:08 2006
>@@ -1,18 +1,21 @@
>-MD5 (AFNI-2005.12.30.0934.2/afni_src.tgz) = 3c711d3ba5295953f0e8acbb3062ab65
>-SHA256 (AFNI-2005.12.30.0934.2/afni_src.tgz) = a7341ffa0f8725cd0c7bc3bd9ccb097d05ec5d56b60f92037a5f8a5e0d0e6316
>-SIZE (AFNI-2005.12.30.0934.2/afni_src.tgz) = 10863304
>-MD5 (AFNI-2005.12.30.0934.2/afni_doc.tgz) = 3b085de85fc46908652ae287d1cceb38
>-SHA256 (AFNI-2005.12.30.0934.2/afni_doc.tgz) = 28bfcb085d97f63a7e6b753d784908d7f90d9d3ba735d96b18c1e893af4d6cd1
>-SIZE (AFNI-2005.12.30.0934.2/afni_doc.tgz) = 3267095
>-MD5 (AFNI-2005.12.30.0934.2/afni.1) = 39c9a1a39b207cd957f0f0d5ec220e4e
>-SHA256 (AFNI-2005.12.30.0934.2/afni.1) = f14991934a8b78f2497cd1d0f48b849c1a6debef01c666eafd70993ba63c99da
>-SIZE (AFNI-2005.12.30.0934.2/afni.1) = 1103
>-MD5 (AFNI-2005.12.30.0934.2/Makefile.FreeBSD_PORT) = 77fd9306b8e5c73c555edcf04aeaf562
>-SHA256 (AFNI-2005.12.30.0934.2/Makefile.FreeBSD_PORT) = f29118dbe49cc95de62a6b3ca2b31cfae0017247854d764dc5e0069ed58f589b
>-SIZE (AFNI-2005.12.30.0934.2/Makefile.FreeBSD_PORT) = 3101
>-MD5 (AFNI-2005.12.30.0934.2/TTatlas+tlrc.BRIK.gz) = f5a107b049bc426af5342565f4e5beee
>-SHA256 (AFNI-2005.12.30.0934.2/TTatlas+tlrc.BRIK.gz) = 0b5b087006e07e05c5f0c8306acaade955924f744457cec0c00844cc2e9e67cd
>-SIZE (AFNI-2005.12.30.0934.2/TTatlas+tlrc.BRIK.gz) = 159912
>-MD5 (AFNI-2005.12.30.0934.2/TTatlas+tlrc.HEAD) = a0ca787a2996d7e66548176808503ac5
>-SHA256 (AFNI-2005.12.30.0934.2/TTatlas+tlrc.HEAD) = 51c3fb158990616f355fea56886fc7c85d80ac96779f5a65a8f69207c2a85919
>-SIZE (AFNI-2005.12.30.0934.2/TTatlas+tlrc.HEAD) = 1750
>+MD5 (AFNI-2006.03.21.1314/afni_src.tgz) = 8af3ae355ba30d802ebc60a826ee5f6c
>+SHA256 (AFNI-2006.03.21.1314/afni_src.tgz) = 74a991f8689d4e717956d292552cb300fa574e33819941b7719b3390f9c9bfc3
>+SIZE (AFNI-2006.03.21.1314/afni_src.tgz) = 10931595
>+MD5 (AFNI-2006.03.21.1314/afni_doc.tgz) = 3b085de85fc46908652ae287d1cceb38
>+SHA256 (AFNI-2006.03.21.1314/afni_doc.tgz) = 28bfcb085d97f63a7e6b753d784908d7f90d9d3ba735d96b18c1e893af4d6cd1
>+SIZE (AFNI-2006.03.21.1314/afni_doc.tgz) = 3267095
>+MD5 (AFNI-2006.03.21.1314/afni.1) = 39c9a1a39b207cd957f0f0d5ec220e4e
>+SHA256 (AFNI-2006.03.21.1314/afni.1) = f14991934a8b78f2497cd1d0f48b849c1a6debef01c666eafd70993ba63c99da
>+SIZE (AFNI-2006.03.21.1314/afni.1) = 1103
>+MD5 (AFNI-2006.03.21.1314/Makefile.FreeBSD_PORT) = 77fd9306b8e5c73c555edcf04aeaf562
>+SHA256 (AFNI-2006.03.21.1314/Makefile.FreeBSD_PORT) = f29118dbe49cc95de62a6b3ca2b31cfae0017247854d764dc5e0069ed58f589b
>+SIZE (AFNI-2006.03.21.1314/Makefile.FreeBSD_PORT) = 3101
>+MD5 (AFNI-2006.03.21.1314/TTatlas+tlrc.BRIK.gz) = f5a107b049bc426af5342565f4e5beee
>+SHA256 (AFNI-2006.03.21.1314/TTatlas+tlrc.BRIK.gz) = 0b5b087006e07e05c5f0c8306acaade955924f744457cec0c00844cc2e9e67cd
>+SIZE (AFNI-2006.03.21.1314/TTatlas+tlrc.BRIK.gz) = 159912
>+MD5 (AFNI-2006.03.21.1314/TTatlas+tlrc.HEAD) = a0ca787a2996d7e66548176808503ac5
>+SHA256 (AFNI-2006.03.21.1314/TTatlas+tlrc.HEAD) = 51c3fb158990616f355fea56886fc7c85d80ac96779f5a65a8f69207c2a85919
>+SIZE (AFNI-2006.03.21.1314/TTatlas+tlrc.HEAD) = 1750
>+MD5 (AFNI-2006.03.21.1314/CA_EZ_v1.3b-Mar1506.tgz) = a66e4abb3385878a945351e761d12723
>+SHA256 (AFNI-2006.03.21.1314/CA_EZ_v1.3b-Mar1506.tgz) = c9e884370a1580b1101c01f44cc76f81fc0fd64af7796b76762091ee9de4feed
>+SIZE (AFNI-2006.03.21.1314/CA_EZ_v1.3b-Mar1506.tgz) = 2645818
>diff -ruN /usr/ports/science/afni/pkg-message afni/pkg-message
>--- /usr/ports/science/afni/pkg-message	Wed Dec 31 18:00:00 1969
>+++ afni/pkg-message	Fri Jan  6 09:49:01 2006
>@@ -0,0 +1,21 @@
>+=============================================================================
>+Users must have ${PREFIX}/${AFNI}/bin in their PATH in order
>+to run programs in the AFNI distribution.
>+
>+Documentation can be found in ${PREFIX}/${AFNI}/afni_doc.
>+
>+The environment variable AFNI_PLUGIN_PATH must also be set to 
>+${PREFIX}/${AFNI}/bin in order to run AFNI plugins.
>+
>+Each user is advised to create a .afnirc file in their home directory
>+to customize settings.
>+
>+For questions or comments regarding the FreeBSD port, please contact the
>+port maintainer: 
>+
>+bacon@smithers.neuro.mcw.edu
>+
>+For AFNI configuration and usage, please visit the AFNI WEB site at 
>+
>+http://afni.nimh.nih.gov.
>+=============================================================================
>diff -ruN /usr/ports/science/afni/pkg-plist afni/pkg-plist
>--- /usr/ports/science/afni/pkg-plist	Sat Apr 15 13:24:01 2006
>+++ afni/pkg-plist	Thu May  4 12:24:31 2006
>@@ -3,6 +3,7 @@
> bin/1deval
> bin/1dfft
> bin/1dgrayplot
>+bin/1dmatcalc
> bin/1dnorm
> bin/1dplot
> bin/1dsum
>@@ -11,7 +12,6 @@
> bin/24swap
> bin/2dImReg
> bin/2swap
>-bin/3T_toafni
> bin/3dAFNIto3D
> bin/3dAFNItoANALYZE
> bin/3dAFNItoMINC
>@@ -29,6 +29,7 @@
> bin/3dAutobox
> bin/3dAutomask
> bin/3dBRAIN_VOYAGERtoAFNI
>+bin/3dBrickStat
> bin/3dCM
> bin/3dCRUISEtoAFNI
> bin/3dClipLevel
>@@ -47,12 +48,12 @@
> bin/3dFriedman
> bin/3dGetrow
> bin/3dIntracranial
>+bin/3dInvFMRI
> bin/3dKruskalWallis
> bin/3dLRflip
> bin/3dLocalstat
> bin/3dMINCtoAFNI
> bin/3dMannWhitney
>-bin/3dMax
> bin/3dMean
> bin/3dMedianFilter
> bin/3dNLfim
>@@ -76,6 +77,7 @@
> bin/3dTshift
> bin/3dTsmooth
> bin/3dTstat
>+bin/3dTwotoComplex
> bin/3dUndump
> bin/3dUniformize
> bin/3dVol2Surf
>@@ -106,6 +108,7 @@
> bin/3dinfo
> bin/3dmaskave
> bin/3dmaskdump
>+bin/3dmatcalc
> bin/3dmaxima
> bin/3dmerge
> bin/3dnewid
>@@ -309,6 +312,18 @@
> lib/plug_volreg.so
> lib/plug_wavelets.so
> lib/plug_zeropad.so
>+%%DATADIR%%/Dist_Stamp
>+%%DATADIR%%/Readme_dist
>+%%DATADIR%%/TT_N27+tlrc.BRIK.gz
>+%%DATADIR%%/TT_N27+tlrc.HEAD
>+%%DATADIR%%/TT_N27_CA_EZ_MPM+tlrc.BRIK.gz
>+%%DATADIR%%/TT_N27_CA_EZ_MPM+tlrc.HEAD
>+%%DATADIR%%/TT_N27_CA_EZ_PMaps+tlrc.BRIK.gz
>+%%DATADIR%%/TT_N27_CA_EZ_PMaps+tlrc.HEAD
>+%%DATADIR%%/TT_N27_EZ_LR+tlrc.BRIK.gz
>+%%DATADIR%%/TT_N27_EZ_LR+tlrc.HEAD
>+%%DATADIR%%/TT_N27_EZ_ML+tlrc.BRIK.gz
>+%%DATADIR%%/TT_N27_EZ_ML+tlrc.HEAD
> %%DATADIR%%/TTatlas+tlrc.BRIK.gz
> %%DATADIR%%/TTatlas+tlrc.HEAD
> %%DATADIR%%/face_JimEliassen.jpg
>@@ -341,6 +356,7 @@
> %%DATADIR%%/face_claudio.jpg
> %%DATADIR%%/face_cmoritz.jpg
> %%DATADIR%%/face_cmyers.jpg
>+%%DATADIR%%/face_cscholl.jpg
> %%DATADIR%%/face_csenior.jpg
> %%DATADIR%%/face_cwettig.jpg
> %%DATADIR%%/face_dglen.jpg
>@@ -376,11 +392,13 @@
> %%DATADIR%%/face_kropella.jpg
> %%DATADIR%%/face_kschreiber.jpg
> %%DATADIR%%/face_kuba.jpg
>+%%DATADIR%%/face_kylesimmons.jpg
> %%DATADIR%%/face_lask.jpg
> %%DATADIR%%/face_laura.jpg
> %%DATADIR%%/face_lincoln1.jpg
> %%DATADIR%%/face_lincoln2.jpg
> %%DATADIR%%/face_lindachao.jpg
>+%%DATADIR%%/face_lisaeyler.jpg
> %%DATADIR%%/face_lizyoder.jpg
> %%DATADIR%%/face_ljcox.jpg
> %%DATADIR%%/face_llatour.jpg

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Attachments on bug 97404: 65782