FreeBSD Bugzilla – Attachment 66924 Details for
Bug 98764
[maintainer-update] update BLAST, add executable for other architectures
Home
|
New
|
Browse
|
Search
|
[?]
|
Reports
|
Help
|
New Account
|
Log In
Remember
[x]
|
Forgot Password
Login:
[x]
[patch]
blast.diff
blast.diff (text/plain), 2.89 KB, created by
Fernan Aguero
on 2006-06-09 20:10:18 UTC
(
hide
)
Description:
blast.diff
Filename:
MIME Type:
Creator:
Fernan Aguero
Created:
2006-06-09 20:10:18 UTC
Size:
2.89 KB
patch
obsolete
>diff -ruN /usr/ports/biology/blast/Makefile blast/Makefile >--- /usr/ports/biology/blast/Makefile Sun Jan 15 12:12:49 2006 >+++ blast/Makefile Fri Jun 9 15:54:06 2006 >@@ -8,7 +8,7 @@ > > PORTNAME= wu-blast > PORTVERSION= 2.0 >-PORTREVISION= 20060101 >+PORTREVISION= 20060322 # YYYYMMDD > CATEGORIES= biology > MASTER_SITES= # > EXTRACT_SUFX= .tar.Z >@@ -21,7 +21,7 @@ > IGNOREFILES= ${DISTFILES} > > RESTRICTED= "License does not allow redistribution of binaries. You should first register for the software, which is free for academic use." >-ONLY_FOR_ARCHS= i386 >+ONLY_FOR_ARCHS= i386 amd64 > > NO_BUILD= yes > DOWNLOAD_URL= http://blast.wustl.edu/licensing >@@ -30,7 +30,7 @@ > PKGMESSAGE= ${WRKDIR}/pkg-message > > PORTDOCS= COPYRIGHT FAQ-Indexing.html HISTORY LICENSE Memory.html \ >- README.html parameters.html >+ README.html parameters.html tabular.html > BINS= blasta gb2fasta gt2fasta memfile nrdb pam patdb \ > pir2fasta sp2fasta xdformat xdget > SCRIPTS= wu-blastall wu-formatdb >@@ -39,10 +39,22 @@ > > .include <bsd.port.pre.mk> > >+.if ${ARCH} == amd64 >+.if ${OSVERSION} >= 500001 >+DISTNAME= blast${PORTVERSION:S/.0//}.freebsd-5.x-x64 >+.elsif ${OSVERSION} >= 600000 >+DISTNAME= blast${PORTVERSION:S/.0//}.freebsd-6.x-x64 >+.else >+IGNORE= "There are no WU-BLAST executables for your combination of architecture and FreeBSD version. Consider moving to one of the supported versions for your architecture" >+.endif >+.else > .if ${OSVERSION} < 500000 > DISTNAME= blast${PORTVERSION:S/.0//}.freebsd-4.x-i686 >+.elsif ${OSVERSION} >= 50000 && ${OSVERSION} < 600000 >+DISTNAME= blast${PORTVERSION:S/.0//}.freebsd-5.x-i686 > .else >-DISTNAME= blast${PORTVERSION:S/.0//}.freebsd-i686 >+DISTNAME= blast${PORTVERSION:S/.0//}.freebsd-6.x-i686 >+.endif > .endif > > .if !exists(${DISTDIR}/${DISTNAME}${EXTRACT_SUFX}) >diff -ruN /usr/ports/biology/blast/distinfo blast/distinfo >--- /usr/ports/biology/blast/distinfo Sun Jan 15 12:12:49 2006 >+++ blast/distinfo Fri Jun 9 15:59:39 2006 >@@ -1,4 +1,10 @@ > MD5 (blast2.freebsd-4.x-i686.tar.Z) = IGNORE >-MD5 (blast2.freebsd-i686.tar.Z) = IGNORE >+MD5 (blast2.freebsd-5.x-i686.tar.Z) = IGNORE >+MD5 (blast2.freebsd-6.x-i686.tar.Z) = IGNORE >+MD5 (blast2.freebsd-5.x-x64.tar.Z) = IGNORE >+MD5 (blast2.freebsd-6.x-x64.tar.Z) = IGNORE > SHA256 (blast2.freebsd-4.x-i686.tar.Z) = IGNORE >-SHA256 (blast2.freebsd-i686.tar.Z) = IGNORE >+SHA256 (blast2.freebsd-5.x-i686.tar.Z) = IGNORE >+SHA256 (blast2.freebsd-6.x-i686.tar.Z) = IGNORE >+SHA256 (blast2.freebsd-5.x-x64.tar.Z) = IGNORE >+SHA256 (blast2.freebsd-6.x-x64.tar.Z) = IGNORE >diff -ruN /usr/ports/biology/blast/pkg-plist blast/pkg-plist >--- /usr/ports/biology/blast/pkg-plist Fri Mar 18 10:01:07 2005 >+++ blast/pkg-plist Fri Jun 9 15:57:18 2006 >@@ -26,6 +26,7 @@ > %%PORTDOCS%%%%DOCSDIR%%/README.html > %%PORTDOCS%%%%DOCSDIR%%/parameters.html > %%PORTDOCS%%%%DOCSDIR%%/parameters.pdf >+%%PORTDOCS%%%%DOCSDIR%%/tabular.html > %%DATADIR%%/matrix/aa/nuc.4.4 > %%DATADIR%%/matrix/aa/BLOSUM30 > %%DATADIR%%/matrix/aa/BLOSUM35
You cannot view the attachment while viewing its details because your browser does not support IFRAMEs.
View the attachment on a separate page
.
View Attachment As Diff
View Attachment As Raw
Actions:
View
|
Diff
Attachments on
bug 98764
: 66924