Attachment 76792 Details for Bug 110621 – file.txt

file.txt

file.txt (text/plain), 2.93 KB, created by Nemo Liu on 2007-03-21 15:10:03 UTC

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Creator: Nemo Liu

Created: 2007-03-21 15:10:03 UTC

Size: 2.93 KB

patch

obsolete

>? patch-biojava.diff
>Index: Makefile
>===================================================================
>RCS file: /home/ncvs/ports/biology/biojava/Makefile,v
>retrieving revision 1.12
>diff -u -r1.12 Makefile
>--- Makefile	11 Feb 2007 01:23:27 -0000	1.12
>+++ Makefile	21 Mar 2007 14:52:25 -0000
>@@ -2,12 +2,12 @@
> # Date created:	15 September 2000
> # Whom:		FreeBSD Bio porters (bio@freebsd.net)
> #
>-# $FreeBSD: ports/biology/biojava/Makefile,v 1.12 2007/02/11 01:23:27 kris Exp $
>+# $FreeBSD$
> #
> 
> PORTNAME=	biojava
>-DISTVERSION=	1.5-beta
>-PORTEPOCH=	1
>+DISTVERSION=	1.5-beta2
>+#PORTEPOCH=	1
> CATEGORIES=	biology java
> MASTER_SITES=	http://www.biojava.org/download/bj15b/all/:source	\
> 		http://www.biojava.org/download/bj15b/bin/:bin
>@@ -15,7 +15,7 @@
> 		bytecode.jar:bin
> EXTRACT_ONLY=	${PORTNAME}-${DISTVERSION}${EXTRACT_SUFX}
> 
>-MAINTAINER=	ports@FreeBSD.org
>+MAINTAINER=	nemoliu@gmail.com
> COMMENT=	Open-source java tools for processing biological data
> 
> BUILD_DEPENDS=	${JAVALIBDIR}/hsqldb.jar:${PORTSDIR}/databases/hsqldb \
>@@ -33,12 +33,8 @@
> BUILD_DEPENDS+=	${JAVALIBDIR}/junit.jar:${PORTSDIR}/java/junit
> .endif
> 
>-BROKEN=		Does not build
>-DEPRECATED=	${BROKEN}
>-EXPIRATION_DATE=2007-04-10
>-
> USE_JAVA=	yes
>-JAVA_VERSION=	1.4+
>+JAVA_VERSION=	1.5+
> USE_ANT=	yes
> MAKE_ENV=	CLASSPATH="${JAVALIBDIR}"
> ALL_TARGET=	compile-apps
>@@ -48,6 +44,7 @@
> JARFILES=	apps-${DISTVERSION}.jar biojava.jar bytecode.jar
> PORTDOCS=	biojava
> SAMPLES=	demos
>+WRKSRC=${WRKDIR}
> 
> .if !defined(NOPORTDOCS)
> ALL_TARGET+=	javadocs-biojava
>Index: distinfo
>===================================================================
>RCS file: /home/ncvs/ports/biology/biojava/distinfo,v
>retrieving revision 1.5
>diff -u -r1.5 distinfo
>--- distinfo	21 Nov 2006 22:35:28 -0000	1.5
>+++ distinfo	21 Mar 2007 14:52:25 -0000
>@@ -1,6 +1,6 @@
>-MD5 (biojava-1.5-beta.tar.gz) = 8dc7307d9dc4bc9dd9222dfaaee5d047
>-SHA256 (biojava-1.5-beta.tar.gz) = a8e0ba3a393bc70606bf7393255077b32bd1c1980f5daeec07c7362f0d2985e1
>-SIZE (biojava-1.5-beta.tar.gz) = 15777707
>+MD5 (biojava-1.5-beta2.tar.gz) = 904e9a5600102a9a5238b87868e3f09f
>+SHA256 (biojava-1.5-beta2.tar.gz) = f2912bc90d4b9c01ac24e9db9718203af01b098538020989d4519cfabd901208
>+SIZE (biojava-1.5-beta2.tar.gz) = 28767548
> MD5 (bytecode.jar) = 332e0b06b485645802067c92f1055e37
> SHA256 (bytecode.jar) = 745bf5899361565f1a3572f19d4ae9c99354856d8a9f29bf52908650c0e9e48f
> SIZE (bytecode.jar) = 93463
>Index: files/patch-build.xml
>===================================================================
>RCS file: /home/ncvs/ports/biology/biojava/files/patch-build.xml,v
>retrieving revision 1.1
>diff -u -r1.1 patch-build.xml
>--- files/patch-build.xml	21 Nov 2006 22:35:28 -0000	1.1
>+++ files/patch-build.xml	21 Mar 2007 14:52:25 -0000
>@@ -1,5 +1,5 @@
>---- build.xml.orig	Thu Sep  7 11:18:13 2006
>-+++ build.xml	Sun Oct 22 12:43:18 2006
>+--- build.xml.orig	Fri Dec 29 14:12:28 2006
>++++ build.xml	Wed Mar 21 16:14:38 2007
> @@ -49,7 +49,7 @@
>  
>      <property name="build.compiler" value="javac1.4" />

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Attachments on bug 110621: 76792 | 76793