Attachment 84177 Details for Bug 120129 – file.shar

file.shar

file.shar (text/plain), 8.12 KB, created by Jason Bacon on 2008-01-29 21:50:01 UTC

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Creator: Jason Bacon

Created: 2008-01-29 21:50:01 UTC

Size: 8.12 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	science/dtiquery
>#	science/dtiquery/files
>#	science/dtiquery/files/dtiquery.1
>#	science/dtiquery/files/pkg-message.in
>#	science/dtiquery/files/patch-DTIQuery-Makefile
>#	science/dtiquery/files/patch-Makefile.definitions
>#	science/dtiquery/files/patch-precompute-Makefile
>#	science/dtiquery/Makefile
>#	science/dtiquery/distinfo
>#	science/dtiquery/pkg-descr
>#
>echo c - science/dtiquery
>mkdir -p science/dtiquery > /dev/null 2>&1
>echo c - science/dtiquery/files
>mkdir -p science/dtiquery/files > /dev/null 2>&1
>echo x - science/dtiquery/files/dtiquery.1
>sed 's/^X//' >science/dtiquery/files/dtiquery.1 << 'END-of-science/dtiquery/files/dtiquery.1'
>X.TH DTIQUERY 1
>X.SH NAME    \" Section header
>X.PP
>X
>XDTIQuery - DTI Visualization Software
>X
>X.SH SYNOPSIS
>X.PP
>X.nf 
>X.na 
>Xdtiquery
>Xdtiprecompute_cmd [args]
>Xdtiprecompute_gui
>X
>X.ad
>X.fi
>X
>X.SH "DESCRIPTION"
>X
>XDTIQuery is a software suite for analyzing DTI (Diffusion Tensor Imaging)
>Xdata obtained via MRI (Magnetic Resonence Imaging).  For full documentation,
>Xplease visit 
>X
>Xhttp://graphics.stanford.edu/projects/dti/software/.
>X
>X.SH "SEE ALSO"
>X
>Xafni(1), caret(1), freesurfer(1), fsl(1)
>X
>X.SH AUTHOR
>X.nf
>X.na
>XDavid Akers
>XStanford University
>X
>END-of-science/dtiquery/files/dtiquery.1
>echo x - science/dtiquery/files/pkg-message.in
>sed 's/^X//' >science/dtiquery/files/pkg-message.in << 'END-of-science/dtiquery/files/pkg-message.in'
>X=============================================================================
>XDTI Query users will need %%PREFIX%%/bin in their PATH.
>X
>XFor questions or comments regarding this port, please contact the
>Xport maintainer.
>X
>XFor dtiquery usage, please visit the WEB site at
>X
>Xhttp://graphics.stanford.edu/projects/dti/
>X=============================================================================
>END-of-science/dtiquery/files/pkg-message.in
>echo x - science/dtiquery/files/patch-DTIQuery-Makefile
>sed 's/^X//' >science/dtiquery/files/patch-DTIQuery-Makefile << 'END-of-science/dtiquery/files/patch-DTIQuery-Makefile'
>X--- DTIQuery/Makefile.orig	Thu Dec  6 13:48:54 2007
>X+++ DTIQuery/Makefile	Thu Dec  6 13:49:24 2007
>X@@ -12,8 +12,8 @@
>X 
>X VTK_LIBS = -lvtkIO \
>X         -lvtkRendering -lvtkGraphics -lvtkImaging \
>X-        -lvtkFiltering -lvtkCommon -lvtkHybrid -lvtkpng -lvtkzlib \
>X-        -lvtkftgl -lvtkfreetype -lvtkjpeg -lvtkDICOMParser \
>X+        -lvtkFiltering -lvtkCommon -lvtkHybrid -lpng -lz \
>X+        -lvtkftgl -lvtkfreetype -ljpeg -lvtkDICOMParser \
>X 
>X # for FreeBSD, need -lpng -ljpeg -lz instead of -lvtkpng -lvtkzlib -lvtkjpeg
>X 
>END-of-science/dtiquery/files/patch-DTIQuery-Makefile
>echo x - science/dtiquery/files/patch-Makefile.definitions
>sed 's/^X//' >science/dtiquery/files/patch-Makefile.definitions << 'END-of-science/dtiquery/files/patch-Makefile.definitions'
>X--- Makefile.definitions.orig	Wed Dec 19 10:50:50 2007
>X+++ Makefile.definitions	Wed Dec 19 10:51:13 2007
>X@@ -1,6 +1,6 @@
>X-CYGWIN = 1
>X+# CYGWIN = 1
>X # mac = 1
>X-# FreeBSD = 1
>X+FreeBSD = 1
>X # linux = 1
>X 
>X # Uncomment the line above corresponding to your system. Then find the 
>X@@ -46,18 +46,19 @@
>X 
>X ifdef FreeBSD
>X 
>X-WX_CONFIG_BIN		?= /usr/X11R6/bin/wxgtk2-2.8-config
>X+WX_CONFIG_BIN		?= ${X11BASE}/bin/wxgtk2-2.8-config
>X VTK_INCLUDE_PATHS	?= -I/usr/local/include/vtk-5.0/
>X VTK_LIB_PATHS		?= -L/usr/local/lib/vtk-5.0/
>X WX_INCLUDE_PATHS	?= `$(WX_CONFIG_BIN) --cxxflags`
>X WX_LIB_PATHS		?= `$(WX_CONFIG_BIN) --libs` `$(WX_CONFIG_BIN) \
>X 				--gl-libs`
>X-RAPID_INCLUDE_PATH	?= -I/usr/local/include
>X+RAPID_INCLUDE_PATH	?= -I/usr/local/include/RAPID
>X RAPID_LIB_PATH		?= -L/usr/local/lib
>X TNT_INCLUDE_PATH	?= -I/usr/local/include/tnt/
>X JAMA_INCLUDE_PATH	?= -I/usr/local/include/
>X ZLIB_INCLUDE_PATH	?= -I/usr/include
>X-SYS_INCLUDE_PATHS	?= -I/usr/include -I/usr/X11R6/include -I/usr/local/include/gtk-2.0 -I/usr/X11R6/include/gtk-2.0 -I/usr/local/include/glib-2.0 -I/usr/local/include/cairo -I/usr/local/include/pango-1.0 -I/usr/X11R6/include/pango-1.0 -I/usr/local/include/atk-1.0 
>X+SYS_INCLUDE_PATHS	?= -I/usr/include -I${X11BASE}/include -I/usr/local/include/gtk-2.0 -I${X11BASE}/include/gtk-2.0 -I/usr/local/include/glib-2.0 -I/usr/local/include/cairo -I/usr/local/include/pango-1.0 -I${X11BASE}/include/pango-1.0 -I/usr/local/include/atk-1.0 
>X+SYS_CXXFLAGS 		?= -g
>X SYS_LIBS		?= -L/usr/local/lib -lXt -lGL -lpng
>X 
>X else
>END-of-science/dtiquery/files/patch-Makefile.definitions
>echo x - science/dtiquery/files/patch-precompute-Makefile
>sed 's/^X//' >science/dtiquery/files/patch-precompute-Makefile << 'END-of-science/dtiquery/files/patch-precompute-Makefile'
>X--- precompute/Makefile.orig	Thu Dec  6 13:51:44 2007
>X+++ precompute/Makefile	Thu Dec  6 13:52:16 2007
>X@@ -21,8 +21,8 @@
>X 
>X VTK_LIBS = -lvtkIO \
>X         -lvtkRendering -lvtkGraphics -lvtkImaging \
>X-        -lvtkFiltering -lvtkCommon -lvtkHybrid -lvtkpng -lvtkzlib \
>X-        -lvtkftgl -lvtkfreetype -lvtkjpeg -lvtkDICOMParser \
>X+        -lvtkFiltering -lvtkCommon -lvtkHybrid -lpng -lz \
>X+        -lvtkftgl -lvtkfreetype -ljpeg -lvtkDICOMParser \
>X 
>X # for FreeBSD, need -lpng -ljpeg -lz instead of -lvtkpng -lvtkzlib -lvtkjpeg
>X 
>END-of-science/dtiquery/files/patch-precompute-Makefile
>echo x - science/dtiquery/Makefile
>sed 's/^X//' >science/dtiquery/Makefile << 'END-of-science/dtiquery/Makefile'
>X############################################################################
>X# New ports collection Makefile for:   DTI-Query
>X# Date created:        10 July 2006
>X# Whom:                Jason W. Bacon <jwbacon@tds.net>
>X#
>X# $FreeBSD$
>X#
>X############################################################################
>X
>XPORTNAME=	dtiquery
>XPORTVERSION=	1.1
>XCATEGORIES=	science biology
>XMASTER_SITES=	http://graphics.stanford.edu/projects/dti/
>X
>XMAINTAINER=	jwbacon@tds.net
>XCOMMENT=	Stanford DTI Visualization tool
>X
>XBUILD_DEPENDS=	${LOCALBASE}/include/tnt/tnt.h:${PORTSDIR}/devel/tnt \
>X		${LOCALBASE}/include/tnt/jama_cholesky.h:${PORTSDIR}/math/jama \
>X		${LOCALBASE}/lib/libRAPID.a:${PORTSDIR}/math/rapid
>XEXTRACT_DEPENDS=	dos2unix:${PORTSDIR}/converters/unix2dos
>XLIB_DEPENDS=	wx_gtk2_core-2.8.0:${PORTSDIR}/x11-toolkits/wxgtk28 \
>X		vtkCommon.5:${PORTSDIR}/math/vtk5
>X
>XCONFLICTS=	dtiquery-1.0*
>X
>XRESTRICTED=	Must register to download at http://graphics.stanford.edu/projects/dti/
>X
>XSUB_FILES=	pkg-message
>XPKGMESSAGE=	${WRKDIR}/pkg-message
>X
>XUSE_GMAKE=	yes
>X
>XPLIST_FILES=	bin/dtiquery \
>X		bin/dtiprecompute_cmd \
>X		bin/dtiprecompute_gui
>X
>XALL_TARGET=
>X
>XMAN1=		dtiquery.1 \
>X		dtiprecompute_cmd.1 \
>X		dtiprecompute_gui.1
>X
>X.include <bsd.port.pre.mk>
>X
>X.if !exists(${DISTDIR}/${DISTNAME}.tar.gz)
>XIGNORE=	you must manually fetch ${DISTNAME}.tar.gz from http://graphics.stanford.edu/projects/dti/, place it in ${DISTDIR}, and then run make again
>X.endif
>X
>Xpost-extract:
>X	dos2unix ${WRKSRC}/*/Makefile ${WRKSRC}/Makefile*
>X	${REINPLACE_CMD} "s/zlib-1.2.2 RAPID201//g" ${WRKSRC}/Makefile
>X
>Xdo-install:
>X	${INSTALL_PROGRAM} ${WRKSRC}/DTIQuery/dtiquery ${PREFIX}/bin
>X	${INSTALL_PROGRAM} ${WRKSRC}/precompute/dtiprecompute_cmd ${PREFIX}/bin
>X	${INSTALL_PROGRAM} ${WRKSRC}/precompute/dtiprecompute_gui ${PREFIX}/bin
>X	${INSTALL_MAN} ${FILESDIR}/dtiquery.1 ${MAN1PREFIX}/man/man1
>X	${INSTALL_MAN} ${FILESDIR}/dtiquery.1 ${MAN1PREFIX}/man/man1/dtiprecompute_cmd.1
>X	${INSTALL_MAN} ${FILESDIR}/dtiquery.1 ${MAN1PREFIX}/man/man1/dtiprecompute_gui.1
>X
>Xpost-install:
>X	@${CAT} ${PKGMESSAGE}
>X
>X.include <bsd.port.post.mk>
>END-of-science/dtiquery/Makefile
>echo x - science/dtiquery/distinfo
>sed 's/^X//' >science/dtiquery/distinfo << 'END-of-science/dtiquery/distinfo'
>XMD5 (dtiquery-1.1.tar.gz) = 4104aece50029d9b3183a244c2bb36fe
>XSHA256 (dtiquery-1.1.tar.gz) = c59f5911e633f1f364cfd03ed18c296f99963184e2c2ddea937109f45f4b456e
>XSIZE (dtiquery-1.1.tar.gz) = 285780
>END-of-science/dtiquery/distinfo
>echo x - science/dtiquery/pkg-descr
>sed 's/^X//' >science/dtiquery/pkg-descr << 'END-of-science/dtiquery/pkg-descr'
>XDTI visualization software from Stanford.
>X
>XWWW: http://graphics.stanford.edu/projects/dti/
>END-of-science/dtiquery/pkg-descr
>exit

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Attachments on bug 120129: 84177