Attachment 86064 Details for Bug 122437 – file.diff

[patch] file.diff

file.diff (text/plain), 42.13 KB, created by Fernan Aguero on 2008-04-04 06:00:12 UTC

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Creator: Fernan Aguero

Created: 2008-04-04 06:00:12 UTC

Size: 42.13 KB

patch

obsolete

>diff -ruN --exclude CVS /usr/ports/biology/embassy/Makefile embassy/Makefile
>--- /usr/ports/biology/embassy/Makefile	Mon Mar 24 11:54:11 2008
>+++ embassy/Makefile	Fri Aug 17 12:09:48 2007
>@@ -3,23 +3,20 @@
> # Date created:		1.November.2004
> # Whom:	      		Fernan Aguero <fernan@iib.unsamn.edu.ar>
> #
>-# $FreeBSD: ports/biology/embassy/Makefile,v 1.9 2008/03/23 16:44:05 miwi Exp $
>+# $FreeBSD: ports/biology/embassy/Makefile,v 1.6 2006/03/31 09:43:21 thierry Exp $
> #
> 
> PORTNAME=	embassy
>-PORTVERSION=	3.0.0
>-PORTREVISION=	2
>+PORTVERSION=	5.0.0
> CATEGORIES=	biology
> MASTER_SITES=	ftp://emboss.open-bio.org/pub/EMBOSS/ \
>-		ftp://ftp.uk.embnet.org/pub/EMBOSS/ \
>-		ftp://ftp.es.embnet.org/pub/software/emboss/EMBOSS/ \
> 		ftp://ftp.ebi.ac.uk/pub/software/unix/EMBOSS/
> DIST_SUBDIR=	emboss
> 
> MAINTAINER=	fernan@iib.unsam.edu.ar
> COMMENT=	A collection of contributed EMBOSS applications
> 
>-LIB_DEPENDS=	nucleus.3:${PORTSDIR}/biology/emboss
>+LIB_DEPENDS=	nucleus.5:${PORTSDIR}/biology/emboss
> 
> PREFIX?=	${LOCALBASE}/emboss
> NO_MTREE=	yes
>@@ -27,7 +24,9 @@
> USE_ICONV=	yes
> USE_GMAKE=	yes
> GNU_CONFIGURE=	yes
>+USE_XLIB=	yes
> USE_MOTIF=	yes
>+USE_LDCONFIG=	yes
> 
> OPTIONS=	DOMAINATRIX	"Protein domain apps" on \
> 		DOMALIGN	"Protein domain apps" on \
>@@ -41,7 +40,8 @@
> 		MSE		"A multiple sequence screen editor" on \
> 		MYEMBOSS	"Examples for developers of EMBOSS apps" on \
> 		PHYLIP		"Phylogeny inference" on \
>-		TOPO		"Transmembrane display" on
>+		TOPO		"Transmembrane display" on \
>+		VIENNA		"RNA folding" on
> 
> CONFIGURE_ENV+=	CPPFLAGS="-I${PREFIX}/include -I${LOCALBASE}/include" \
> 		LDFLAGS="-L${PREFIX}/lib -L${LOCALBASE}/lib"
>@@ -50,8 +50,8 @@
> DOMAINATRIX_VERSION=	0.1.0
> EMNU_VERSION=		1.05
> ESIM4_VERSION=		1.0.0
>-HMMER_VERSION=		2.1.1
>-MEME_VERSION=		2.3.1
>+HMMER_VERSION=		2.3.2
>+MEME_VERSION=		0.1.0
> MSE_VERSION=		1.0.0
> TOPO_VERSION=		1.0.0
> PHYLIP_VERSION=		3.6b
>@@ -60,8 +60,10 @@
> SIGNATURE_VERSION=	0.1.0
> STRUCTURE_VERSION=	0.1.0
> MYEMBOSS_VERSION=	3.0.0
>-EMBASSY_APPS=		DOMAINATRIX EMNU ESIM4 HMMER MEME MSE PHYLIP TOPO \
>-			DOMALIGN DOMSEARCH SIGNATURE STRUCTURE MYEMBOSS
>+VIENNA_VERSION=		1.6
>+EMBASSY_APPS=		DOMAINATRIX EMNU ESIM4 HMMER MEME MSE PHYLIP \
>+			TOPO DOMALIGN DOMSEARCH SIGNATURE STRUCTURE MYEMBOSS \
>+			VIENNA
> 
> .include <bsd.port.pre.mk>
> 
>@@ -88,9 +90,6 @@
> 	    ${CHOWN} -R 0:0 ${${app}_WRKSRC}; \
> 	  fi
> .endfor
>-
>-post-patch:
>-	@${FIND} ${WRKSRC} -name configure | ${XARGS} ${REINPLACE_CMD} -e 's|echo aout|echo elf|'
> 
> do-configure:
> .for app in ${APPLIST}
>diff -ruN --exclude CVS /usr/ports/biology/embassy/distinfo embassy/distinfo
>--- /usr/ports/biology/embassy/distinfo	Fri Mar 31 06:43:21 2006
>+++ embassy/distinfo	Fri Aug 17 12:59:16 2007
>@@ -1,39 +1,42 @@
>-MD5 (emboss/DOMAINATRIX-0.1.0.tar.gz) = 655f6ec58e0b9dfdac111fd9481359cb
>-SHA256 (emboss/DOMAINATRIX-0.1.0.tar.gz) = 6bc374c5275dead68ef09d8273bf4d73a03bc56990e795d6eddcee4de25c12a0
>-SIZE (emboss/DOMAINATRIX-0.1.0.tar.gz) = 349882
>-MD5 (emboss/EMNU-1.05.tar.gz) = b3a7fc11e46f7166ddeec11f2fe03d9b
>-SHA256 (emboss/EMNU-1.05.tar.gz) = d7261d615d6547a9824d3d9e3f82ff756c0db5786e8356bc54cc5fa0c516b26f
>-SIZE (emboss/EMNU-1.05.tar.gz) = 348924
>-MD5 (emboss/ESIM4-1.0.0.tar.gz) = 835393b3246eb4543a694362c6f335ff
>-SHA256 (emboss/ESIM4-1.0.0.tar.gz) = f8241c9e37ccc17dbd29df2d9c90063ba7caf4e64cc5c368b6878c3aa3895620
>-SIZE (emboss/ESIM4-1.0.0.tar.gz) = 384396
>-MD5 (emboss/HMMER-2.1.1.tar.gz) = 382594654e45a7e8d5872b4b1016a494
>-SHA256 (emboss/HMMER-2.1.1.tar.gz) = 78647dfb7841e8b52b4c3de34400c68d17a877b698956ac9a5ee5e030569cca6
>-SIZE (emboss/HMMER-2.1.1.tar.gz) = 561289
>-MD5 (emboss/MEME-2.3.1.tar.gz) = 6f4e516e413582268a34e91fb12e21c3
>-SHA256 (emboss/MEME-2.3.1.tar.gz) = bec2c8002b8b551ef9c639bcb58633499060cd8a1bfe4754db5ed201a6a0dffa
>-SIZE (emboss/MEME-2.3.1.tar.gz) = 423966
>-MD5 (emboss/MSE-1.0.0.tar.gz) = 3b9810e870937ec32220b5c9fe7a83cd
>-SHA256 (emboss/MSE-1.0.0.tar.gz) = ddf9092721666d64c56733d9b6d04e749957848cafa8ba4ec6eee083a0ffcab3
>-SIZE (emboss/MSE-1.0.0.tar.gz) = 415051
>-MD5 (emboss/PHYLIP-3.6b.tar.gz) = 6f2c10438d788acf4a1dff23441b2a2c
>-SHA256 (emboss/PHYLIP-3.6b.tar.gz) = 32aba94d0be011ee304e974657db11544297c008e53341cd000a1f412eb874e2
>-SIZE (emboss/PHYLIP-3.6b.tar.gz) = 1136746
>-MD5 (emboss/TOPO-1.0.0.tar.gz) = 7b3355570ba36f7daf57dcbc717215ce
>-SHA256 (emboss/TOPO-1.0.0.tar.gz) = ff10378b4ecad69ddb374cd47a7d3c7fa5975d6695057f05ea264940258ebaa3
>-SIZE (emboss/TOPO-1.0.0.tar.gz) = 351796
>-MD5 (emboss/DOMALIGN-0.1.0.tar.gz) = 4332d7de49b27f257b58a90510223eb7
>-SHA256 (emboss/DOMALIGN-0.1.0.tar.gz) = de66ddfdb72ccf7291be614c9a83fd8fc47363191cb2c045b372de5cc334a594
>-SIZE (emboss/DOMALIGN-0.1.0.tar.gz) = 347672
>-MD5 (emboss/DOMSEARCH-0.1.0.tar.gz) = c62f9b69a9ed9580d4489a8de9ea4863
>-SHA256 (emboss/DOMSEARCH-0.1.0.tar.gz) = f4933b62e19ee6b23a78b70c3cf2d5a9a18eff1d7532f92e2d33b1d683877916
>-SIZE (emboss/DOMSEARCH-0.1.0.tar.gz) = 352793
>-MD5 (emboss/SIGNATURE-0.1.0.tar.gz) = 1e30e12048609a468b7b4d4affb177cf
>-SHA256 (emboss/SIGNATURE-0.1.0.tar.gz) = c6bb252beaccac5256d99301933b15da6ef90af3f20d7f92fed1f78b271785ee
>-SIZE (emboss/SIGNATURE-0.1.0.tar.gz) = 400125
>-MD5 (emboss/STRUCTURE-0.1.0.tar.gz) = 6efc35eb2855738252e0537198f5225d
>-SHA256 (emboss/STRUCTURE-0.1.0.tar.gz) = 7142e207987da46cd85c81088ea475abb866da90ff57e4c3ca1c63bd8f209b64
>-SIZE (emboss/STRUCTURE-0.1.0.tar.gz) = 362563
>-MD5 (emboss/MYEMBOSS-3.0.0.tar.gz) = 15d5bc7b0ce9dfb113777c06c4e18906
>-SHA256 (emboss/MYEMBOSS-3.0.0.tar.gz) = 0a19ebbe52da849fb87799edaea2281a1bf235e6045725789b9b29e58f0a0dc5
>-SIZE (emboss/MYEMBOSS-3.0.0.tar.gz) = 323628
>+MD5 (emboss/DOMAINATRIX-0.1.0.tar.gz) = 0be3c59550e1e22924ea2540b11af275
>+SHA256 (emboss/DOMAINATRIX-0.1.0.tar.gz) = b81fde3ab329ab75482b341568ef2965d99803765438f3825688a0d2abc05ca6
>+SIZE (emboss/DOMAINATRIX-0.1.0.tar.gz) = 420051
>+MD5 (emboss/EMNU-1.05.tar.gz) = 64d8b9c2cd1a566aebb3355eb684bd35
>+SHA256 (emboss/EMNU-1.05.tar.gz) = 56a55f336b0083ecfd2fd2dae0613f46e802eacb3214c16fc1966e6516795b95
>+SIZE (emboss/EMNU-1.05.tar.gz) = 389665
>+MD5 (emboss/ESIM4-1.0.0.tar.gz) = ee65d0da0f2d75959f370b13f2218c1c
>+SHA256 (emboss/ESIM4-1.0.0.tar.gz) = eee1cc8fef40e19fab74b16f1c1cb0883a49561eb9fdc2075f428085c6722bda
>+SIZE (emboss/ESIM4-1.0.0.tar.gz) = 431329
>+MD5 (emboss/HMMER-2.3.2.tar.gz) = 3aa5707db81854f2674bf27aaeb1362e
>+SHA256 (emboss/HMMER-2.3.2.tar.gz) = 31bbcca1f71b82170a65c4438f9cb9f1dfe3d4e066037a852060b010e3e39b5b
>+SIZE (emboss/HMMER-2.3.2.tar.gz) = 565223
>+MD5 (emboss/MEME-0.1.0.tar.gz) = d304f3b8a8e15af4dfa7b295655d80ec
>+SHA256 (emboss/MEME-0.1.0.tar.gz) = ed4c02010af036515203661c28776b5e773e77eccad59990b7ac1410399d45ef
>+SIZE (emboss/MEME-0.1.0.tar.gz) = 448413
>+MD5 (emboss/MSE-1.0.0.tar.gz) = 3978a06e3651104f622a5834523c45de
>+SHA256 (emboss/MSE-1.0.0.tar.gz) = e35560310ece8bb2dec7eeb88e99f39f313bf7366afc445e3b074b687e7f36b2
>+SIZE (emboss/MSE-1.0.0.tar.gz) = 445013
>+MD5 (emboss/PHYLIP-3.6b.tar.gz) = 760a90bea49872aba95fd7dd2b67570c
>+SHA256 (emboss/PHYLIP-3.6b.tar.gz) = c2397937f4b827844192a33b31f13271a3560c81045543d912a9c28eb6ad894f
>+SIZE (emboss/PHYLIP-3.6b.tar.gz) = 1594433
>+MD5 (emboss/TOPO-1.0.0.tar.gz) = d45602a1b1f22da50a775c41df5fe672
>+SHA256 (emboss/TOPO-1.0.0.tar.gz) = ed1921e92d1bbd9fcc16ab36f2fcbafca9e60cc0d4b4fd1da77660ffd3e7b2f2
>+SIZE (emboss/TOPO-1.0.0.tar.gz) = 379381
>+MD5 (emboss/DOMALIGN-0.1.0.tar.gz) = e5d004c1223116abaebb6657ae4a80fa
>+SHA256 (emboss/DOMALIGN-0.1.0.tar.gz) = aa61cfc6da3cc478dd7f476537cdc6d966b00b90e2adedc709eb75e39e840c5c
>+SIZE (emboss/DOMALIGN-0.1.0.tar.gz) = 460530
>+MD5 (emboss/DOMSEARCH-0.1.0.tar.gz) = 778ab15bce09a6440fc6859b3a27157d
>+SHA256 (emboss/DOMSEARCH-0.1.0.tar.gz) = 23e069161ec56df5eab5fc491ca3493c056cfee42f2e05f1b5ef258498792a87
>+SIZE (emboss/DOMSEARCH-0.1.0.tar.gz) = 469776
>+MD5 (emboss/SIGNATURE-0.1.0.tar.gz) = 26deae308cc5aac3dee5dd03df2ae9e8
>+SHA256 (emboss/SIGNATURE-0.1.0.tar.gz) = 9b0529befdbe5d56b3370cfffe0a4b4cc523f350b50ddd4a61dd24776a1770e8
>+SIZE (emboss/SIGNATURE-0.1.0.tar.gz) = 573992
>+MD5 (emboss/STRUCTURE-0.1.0.tar.gz) = 6736b4741b15d4cba488a5422fcfaee1
>+SHA256 (emboss/STRUCTURE-0.1.0.tar.gz) = 3ed8ea5373232cd80302ff3b8727838b4de2f6b39aa263ab9530bbbe71d730c1
>+SIZE (emboss/STRUCTURE-0.1.0.tar.gz) = 530874
>+MD5 (emboss/MYEMBOSS-3.0.0.tar.gz) = 9c3d6ea80166f62cd6ee63dfcb7e57a4
>+SHA256 (emboss/MYEMBOSS-3.0.0.tar.gz) = dc21b1772c2d76ed1c717eba6f8443b86cdf2e3cbcf71e056cdb9723138e4440
>+SIZE (emboss/MYEMBOSS-3.0.0.tar.gz) = 354179
>+MD5 (emboss/VIENNA-1.6.tar.gz) = 282ed7ac9c1741160fcb1e8d48539311
>+SHA256 (emboss/VIENNA-1.6.tar.gz) = 04c4a57486e23c2cc8ef396d9012c396519b2ab1b13b2500199e6457a34cfa58
>+SIZE (emboss/VIENNA-1.6.tar.gz) = 635638
>diff -ruN --exclude CVS /usr/ports/biology/embassy/pkg-plist embassy/pkg-plist
>--- /usr/ports/biology/embassy/pkg-plist	Fri Mar 31 06:43:21 2006
>+++ embassy/pkg-plist	Wed Apr  2 13:10:24 2008
>@@ -1,201 +1,441 @@
>-%%PLIST_DOMAINATRIX%%bin/cathparse
>-%%PLIST_DOMAINATRIX%%bin/domainnr
>-%%PLIST_DOMAINATRIX%%bin/domainreso
>-%%PLIST_DOMAINATRIX%%bin/domainseqs
>-%%PLIST_DOMAINATRIX%%bin/domainsse
>-%%PLIST_DOMAINATRIX%%bin/scopparse
>-%%PLIST_DOMAINATRIX%%bin/ssematch
>-%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/cathparse.acd
>-%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainnr.acd
>-%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainreso.acd
>-%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainseqs.acd
>-%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainsse.acd
>-%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/scopparse.acd
>-%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/ssematch.acd
>-%%PLIST_DOMALIGN%%bin/allversusall
>-%%PLIST_DOMALIGN%%bin/domainalign
>-%%PLIST_DOMALIGN%%bin/domainrep
>-%%PLIST_DOMALIGN%%bin/seqalign
>-%%PLIST_DOMALIGN%%share/EMBOSS/acd/allversusall.acd
>-%%PLIST_DOMALIGN%%share/EMBOSS/acd/domainalign.acd
>-%%PLIST_DOMALIGN%%share/EMBOSS/acd/domainrep.acd
>-%%PLIST_DOMALIGN%%share/EMBOSS/acd/seqalign.acd
>-%%PLIST_DOMSEARCH%%bin/seqfraggle
>-%%PLIST_DOMSEARCH%%bin/seqnr
>-%%PLIST_DOMSEARCH%%bin/seqsearch
>-%%PLIST_DOMSEARCH%%bin/seqsort
>-%%PLIST_DOMSEARCH%%bin/seqwords
>-%%PLIST_DOMSEARCH%%share/EMBOSS/acd/seqfraggle.acd
>-%%PLIST_DOMSEARCH%%share/EMBOSS/acd/seqnr.acd
>-%%PLIST_DOMSEARCH%%share/EMBOSS/acd/seqsearch.acd
>-%%PLIST_DOMSEARCH%%share/EMBOSS/acd/seqsort.acd
>-%%PLIST_DOMSEARCH%%share/EMBOSS/acd/seqwords.acd
>-%%PLIST_EMNU%%bin/emnu
>-%%PLIST_EMNU%%share/EMBOSS/acd/emnu.acd
>-%%PLIST_HMMER%%bin/ealistat
>-%%PLIST_HMMER%%bin/ehmmalign
>-%%PLIST_HMMER%%bin/ehmmbuild
>-%%PLIST_HMMER%%bin/ehmmcalibrate
>-%%PLIST_HMMER%%bin/ehmmconvert
>-%%PLIST_HMMER%%bin/ehmmemit
>-%%PLIST_HMMER%%bin/ehmmfetch
>-%%PLIST_HMMER%%bin/ehmmindex
>-%%PLIST_HMMER%%bin/ehmmpfam
>-%%PLIST_HMMER%%bin/ehmmsearch
>-%%PLIST_HMMER%%lib/libhmmer.a
>-%%PLIST_HMMER%%lib/libhmmer.la
>-%%PLIST_HMMER%%lib/libhmmer.so
>-%%PLIST_HMMER%%lib/libhmmer.so.2
>-%%PLIST_HMMER%%share/EMBOSS/acd/ealistat.acd
>-%%PLIST_HMMER%%share/EMBOSS/acd/ehmmalign.acd
>-%%PLIST_HMMER%%share/EMBOSS/acd/ehmmbuild.acd
>-%%PLIST_HMMER%%share/EMBOSS/acd/ehmmcalibrate.acd
>-%%PLIST_HMMER%%share/EMBOSS/acd/ehmmconvert.acd
>-%%PLIST_HMMER%%share/EMBOSS/acd/ehmmemit.acd
>-%%PLIST_HMMER%%share/EMBOSS/acd/ehmmfetch.acd
>-%%PLIST_HMMER%%share/EMBOSS/acd/ehmmindex.acd
>-%%PLIST_HMMER%%share/EMBOSS/acd/ehmmpfam.acd
>-%%PLIST_HMMER%%share/EMBOSS/acd/ehmmsearch.acd
>-%%PLIST_MEME%%bin/meme
>-%%PLIST_MEME%%lib/libmeme.a
>-%%PLIST_MEME%%lib/libmeme.la
>-%%PLIST_MEME%%lib/libmeme.so
>-%%PLIST_MEME%%lib/libmeme.so.2
>-%%PLIST_MEME%%share/EMBOSS/acd/meme.acd
>-%%PLIST_MSE%%bin/mse
>-%%PLIST_MSE%%lib/libckit.a
>-%%PLIST_MSE%%lib/libckit.la
>-%%PLIST_MSE%%lib/libckit.so
>-%%PLIST_MSE%%lib/libckit.so.1
>-%%PLIST_MSE%%share/EMBOSS/acd/mse.acd
>-%%PLIST_MYEMBOSS%%bin/myseq
>-%%PLIST_MYEMBOSS%%bin/mytest
>-%%PLIST_MYEMBOSS%%share/EMBOSS/acd/myseq.acd
>-%%PLIST_MYEMBOSS%%share/EMBOSS/acd/mytest.acd
>-%%PLIST_PHYLIP%%bin/fclique
>-%%PLIST_PHYLIP%%bin/fconsense
>-%%PLIST_PHYLIP%%bin/fcontml
>-%%PLIST_PHYLIP%%bin/fcontrast
>-%%PLIST_PHYLIP%%bin/fdiscboot
>-%%PLIST_PHYLIP%%bin/fdnacomp
>-%%PLIST_PHYLIP%%bin/fdnadist
>-%%PLIST_PHYLIP%%bin/fdnainvar
>-%%PLIST_PHYLIP%%bin/fdnaml
>-%%PLIST_PHYLIP%%bin/fdnamlk
>-%%PLIST_PHYLIP%%bin/fdnamove
>-%%PLIST_PHYLIP%%bin/fdnapars
>-%%PLIST_PHYLIP%%bin/fdnapenny
>-%%PLIST_PHYLIP%%bin/fdollop
>-%%PLIST_PHYLIP%%bin/fdolmove
>-%%PLIST_PHYLIP%%bin/fdolpenny
>-%%PLIST_PHYLIP%%bin/fdrawgram
>-%%PLIST_PHYLIP%%bin/fdrawtree
>-%%PLIST_PHYLIP%%bin/ffactor
>-%%PLIST_PHYLIP%%bin/ffitch
>-%%PLIST_PHYLIP%%bin/ffreqboot
>-%%PLIST_PHYLIP%%bin/fgendist
>-%%PLIST_PHYLIP%%bin/fkitsch
>-%%PLIST_PHYLIP%%bin/fmix
>-%%PLIST_PHYLIP%%bin/fmove
>-%%PLIST_PHYLIP%%bin/fneighbor
>-%%PLIST_PHYLIP%%bin/fpars
>-%%PLIST_PHYLIP%%bin/fpenny
>-%%PLIST_PHYLIP%%bin/fproml
>-%%PLIST_PHYLIP%%bin/fpromlk
>-%%PLIST_PHYLIP%%bin/fprotdist
>-%%PLIST_PHYLIP%%bin/fprotpars
>-%%PLIST_PHYLIP%%bin/frestboot
>-%%PLIST_PHYLIP%%bin/frestdist
>-%%PLIST_PHYLIP%%bin/frestml
>-%%PLIST_PHYLIP%%bin/fretree
>-%%PLIST_PHYLIP%%bin/fseqboot
>-%%PLIST_PHYLIP%%bin/fseqbootall
>-%%PLIST_PHYLIP%%bin/ftreedist
>-%%PLIST_PHYLIP%%bin/ftreedistpair
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fclique.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fconsense.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fcontml.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fcontrast.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fdiscboot.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fdnacomp.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fdnadist.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fdnainvar.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fdnaml.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fdnamlk.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fdnamove.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fdnapars.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fdnapenny.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fdollop.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fdolmove.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fdolpenny.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fdrawgram.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fdrawtree.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/ffactor.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/ffitch.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/ffreqboot.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fgendist.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fkitsch.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fmix.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fmove.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fneighbor.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fpars.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fpenny.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fproml.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fpromlk.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fprotdist.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fprotpars.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/frestboot.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/frestdist.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/frestml.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fretree.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fseqboot.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/fseqbootall.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/ftreedist.acd
>-%%PLIST_PHYLIP%%share/EMBOSS/acd/ftreedistpair.acd
>-%%PLIST_PHYLIP%%share/PHYLIP/data/phylipnew/font1
>-%%PLIST_PHYLIP%%share/PHYLIP/data/phylipnew/font2
>-%%PLIST_PHYLIP%%share/PHYLIP/data/phylipnew/font3
>-%%PLIST_PHYLIP%%share/PHYLIP/data/phylipnew/font4
>-%%PLIST_PHYLIP%%share/PHYLIP/data/phylipnew/font5
>-%%PLIST_PHYLIP%%share/PHYLIP/data/phylipnew/font6
>-%%PLIST_PHYLIP%%@dirrm share/PHYLIP/data/phylipnew
>-%%PLIST_PHYLIP%%@dirrm share/PHYLIP/data
>-%%PLIST_PHYLIP%%@dirrm share/PHYLIP
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>-%%PLIST_SIGNATURE%%bin/matgen3d
>-%%PLIST_SIGNATURE%%bin/rocon
>-%%PLIST_SIGNATURE%%bin/rocplot
>-%%PLIST_SIGNATURE%%bin/siggen
>-%%PLIST_SIGNATURE%%bin/siggenlig
>-%%PLIST_SIGNATURE%%bin/sigscan
>-%%PLIST_SIGNATURE%%bin/sigscanlig
>-%%PLIST_SIGNATURE%%share/EMBOSS/acd/libgen.acd
>-%%PLIST_SIGNATURE%%share/EMBOSS/acd/matgen3d.acd
>-%%PLIST_SIGNATURE%%share/EMBOSS/acd/rocon.acd
>-%%PLIST_SIGNATURE%%share/EMBOSS/acd/rocplot.acd
>-%%PLIST_SIGNATURE%%share/EMBOSS/acd/siggen.acd
>-%%PLIST_SIGNATURE%%share/EMBOSS/acd/siggenlig.acd
>-%%PLIST_SIGNATURE%%share/EMBOSS/acd/sigscan.acd
>-%%PLIST_SIGNATURE%%share/EMBOSS/acd/sigscanlig.acd
>-%%PLIST_ESIM4%%bin/esim4
>-%%PLIST_ESIM4%%share/EMBOSS/acd/esim4.acd
>-%%PLIST_STRUCTURE%%bin/contacts
>-%%PLIST_STRUCTURE%%bin/domainer
>-%%PLIST_STRUCTURE%%bin/hetparse
>-%%PLIST_STRUCTURE%%bin/interface
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>-%%PLIST_STRUCTURE%%bin/pdbplus
>-%%PLIST_STRUCTURE%%bin/pdbtosp
>-%%PLIST_STRUCTURE%%bin/sites
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>-%%PLIST_STRUCTURE%%share/EMBOSS/acd/domainer.acd
>-%%PLIST_STRUCTURE%%share/EMBOSS/acd/hetparse.acd
>-%%PLIST_STRUCTURE%%share/EMBOSS/acd/interface.acd
>-%%PLIST_STRUCTURE%%share/EMBOSS/acd/pdbparse.acd
>-%%PLIST_STRUCTURE%%share/EMBOSS/acd/pdbplus.acd
>-%%PLIST_STRUCTURE%%share/EMBOSS/acd/pdbtosp.acd
>-%%PLIST_STRUCTURE%%share/EMBOSS/acd/sites.acd
>-%%PLIST_TOPO%%bin/topo
>-%%PLIST_TOPO%%share/EMBOSS/acd/topo.acd
>-@dirrmtry share/EMBOSS/acd
>-@dirrmtry share/EMBOSS
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>+%%PLIST_DOMAINATRIX%%emboss/bin/domainnr
>+%%PLIST_DOMAINATRIX%%emboss/bin/domainreso
>+%%PLIST_DOMAINATRIX%%emboss/bin/domainseqs
>+%%PLIST_DOMAINATRIX%%emboss/bin/domainsse
>+%%PLIST_DOMAINATRIX%%emboss/bin/scopparse
>+%%PLIST_DOMAINATRIX%%emboss/bin/ssematch
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/acd/cathparse.acd
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/acd/domainnr.acd
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/acd/domainreso.acd
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/acd/domainseqs.acd
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/acd/domainsse.acd
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/acd/scopparse.acd
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/acd/ssematch.acd
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/doc/html/embassy/domainatrix/index.html
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/doc/html/embassy/domainatrix/cathparse.html
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/doc/html/embassy/domainatrix/domainnr.html
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/doc/html/embassy/domainatrix/domainreso.html
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/doc/html/embassy/domainatrix/domainseqs.html
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/doc/html/embassy/domainatrix/domainsse.html
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/doc/html/embassy/domainatrix/scopparse.html
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/doc/html/embassy/domainatrix/ssematch.html
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/doc/programs/text/cathparse.txt
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/doc/programs/text/domainnr.txt
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/doc/programs/text/domainreso.txt
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/doc/programs/text/domainseqs.txt
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/doc/programs/text/domainsse.txt
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/doc/programs/text/scopparse.txt
>+%%PLIST_DOMAINATRIX%%emboss/share/EMBOSS/doc/programs/text/ssematch.txt
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>+%%PLIST_DOMALIGN%%emboss/bin/domainrep
>+%%PLIST_DOMALIGN%%emboss/bin/seqalign
>+%%PLIST_DOMALIGN%%emboss/share/EMBOSS/acd/allversusall.acd
>+%%PLIST_DOMALIGN%%emboss/share/EMBOSS/acd/domainalign.acd
>+%%PLIST_DOMALIGN%%emboss/share/EMBOSS/acd/domainrep.acd
>+%%PLIST_DOMALIGN%%emboss/share/EMBOSS/acd/seqalign.acd
>+%%PLIST_DOMALIGN%%emboss/share/EMBOSS/doc/html/embassy/domalign/index.html
>+%%PLIST_DOMALIGN%%emboss/share/EMBOSS/doc/html/embassy/domalign/allversusall.html
>+%%PLIST_DOMALIGN%%emboss/share/EMBOSS/doc/html/embassy/domalign/domainalign.html
>+%%PLIST_DOMALIGN%%emboss/share/EMBOSS/doc/html/embassy/domalign/domainrep.html
>+%%PLIST_DOMALIGN%%emboss/share/EMBOSS/doc/html/embassy/domalign/seqalign.html
>+%%PLIST_DOMALIGN%%emboss/share/EMBOSS/doc/programs/text/allversusall.txt
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>+%%PLIST_DOMALIGN%%emboss/share/EMBOSS/doc/programs/text/seqalign.txt
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>+%%PLIST_DOMSEARCH%%emboss/share/EMBOSS/acd/seqsearch.acd
>+%%PLIST_DOMSEARCH%%emboss/share/EMBOSS/acd/seqfraggle.acd
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>+%%PLIST_DOMSEARCH%%emboss/share/EMBOSS/acd/seqwords.acd
>+%%PLIST_DOMSEARCH%%emboss/share/EMBOSS/doc/html/embassy/domsearch/index.html
>+%%PLIST_DOMSEARCH%%emboss/share/EMBOSS/doc/html/embassy/domsearch/seqfraggle.html
>+%%PLIST_DOMSEARCH%%emboss/share/EMBOSS/doc/html/embassy/domsearch/seqnr.html
>+%%PLIST_DOMSEARCH%%emboss/share/EMBOSS/doc/html/embassy/domsearch/seqsearch.html
>+%%PLIST_DOMSEARCH%%emboss/share/EMBOSS/doc/html/embassy/domsearch/seqsort.html
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>+%%PLIST_ESIM4%%emboss/share/EMBOSS/acd/esim4.acd
>+%%PLIST_ESIM4%%emboss/share/EMBOSS/doc/html/embassy/esim4/index.html
>+%%PLIST_ESIM4%%emboss/share/EMBOSS/doc/html/embassy/esim4/esim4.html
>+%%PLIST_ESIM4%%emboss/share/EMBOSS/doc/programs/text/esim4.txt
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>+%%PLIST_HMMER%%emboss/share/EMBOSS/acd/ehmmconvert.acd
>+%%PLIST_HMMER%%emboss/share/EMBOSS/acd/ehmmemit.acd
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>+%%PLIST_HMMER%%emboss/share/EMBOSS/acd/ehmmbuild.acd
>+%%PLIST_HMMER%%emboss/share/EMBOSS/acd/ehmmalign.acd
>+%%PLIST_HMMER%%emboss/share/EMBOSS/acd/ehmmpfam.acd
>+%%PLIST_HMMER%%emboss/share/EMBOSS/acd/ehmmsearch.acd
>+%%PLIST_HMMER%%emboss/share/EMBOSS/doc/html/embassy/hmmernew/index.html
>+%%PLIST_HMMER%%emboss/share/EMBOSS/doc/html/embassy/hmmernew/ehmmalign.html
>+%%PLIST_HMMER%%emboss/share/EMBOSS/doc/html/embassy/hmmernew/ehmmbuild.html
>+%%PLIST_HMMER%%emboss/share/EMBOSS/doc/html/embassy/hmmernew/ehmmcalibrate.html
>+%%PLIST_HMMER%%emboss/share/EMBOSS/doc/html/embassy/hmmernew/ehmmconvert.html
>+%%PLIST_HMMER%%emboss/share/EMBOSS/doc/html/embassy/hmmernew/ehmmemit.html
>+%%PLIST_HMMER%%emboss/share/EMBOSS/doc/html/embassy/hmmernew/ehmmfetch.html
>+%%PLIST_HMMER%%emboss/share/EMBOSS/doc/html/embassy/hmmernew/ehmmindex.html
>+%%PLIST_HMMER%%emboss/share/EMBOSS/doc/html/embassy/hmmernew/ehmmpfam.html
>+%%PLIST_HMMER%%emboss/share/EMBOSS/doc/html/embassy/hmmernew/ehmmsearch.html
>+%%PLIST_HMMER%%emboss/share/EMBOSS/doc/programs/text/ehmmalign.txt
>+%%PLIST_HMMER%%emboss/share/EMBOSS/doc/programs/text/ehmmbuild.txt
>+%%PLIST_HMMER%%emboss/share/EMBOSS/doc/programs/text/ehmmcalibrate.txt
>+%%PLIST_HMMER%%emboss/share/EMBOSS/doc/programs/text/ehmmconvert.txt
>+%%PLIST_HMMER%%emboss/share/EMBOSS/doc/programs/text/ehmmemit.txt
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>+%%PLIST_HMMER%%emboss/share/EMBOSS/doc/programs/text/ehmmsearch.txt
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>+%%PLIST_MEME%%emboss/bin/ememe
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>+%%PLIST_MEME%%emboss/share/EMBOSS/acd/ememe.acd
>+%%PLIST_MEME%%emboss/share/EMBOSS/doc/html/embassy/memenew/index.html
>+%%PLIST_MEME%%emboss/share/EMBOSS/doc/html/embassy/memenew/emast.html
>+%%PLIST_MEME%%emboss/share/EMBOSS/doc/html/embassy/memenew/ememe.html
>+%%PLIST_MEME%%emboss/share/EMBOSS/doc/programs/text/emast.txt
>+%%PLIST_MEME%%emboss/share/EMBOSS/doc/programs/text/ememe.txt
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>+%%PLIST_MSE%%emboss/share/EMBOSS/acd/mse.acd
>+%%PLIST_MSE%%emboss/share/EMBOSS/doc/html/embassy/mse/index.html
>+%%PLIST_MSE%%emboss/share/EMBOSS/doc/html/embassy/mse/mse.html
>+%%PLIST_MSE%%emboss/share/EMBOSS/doc/programs/text/mse.txt
>+%%PLIST_MSE%%emboss/lib/libckit.so.1
>+%%PLIST_MSE%%emboss/lib/libckit.so
>+%%PLIST_MSE%%emboss/lib/libckit.la
>+%%PLIST_MSE%%emboss/lib/libckit.a
>+%%PLIST_MYEMBOSS%%emboss/bin/myseq
>+%%PLIST_MYEMBOSS%%emboss/bin/mytest
>+%%PLIST_MYEMBOSS%%emboss/share/EMBOSS/acd/myseq.acd
>+%%PLIST_MYEMBOSS%%emboss/share/EMBOSS/acd/mytest.acd
>+%%PLIST_MYEMBOSS%%emboss/share/EMBOSS/doc/html/embassy/myseq/index.html
>+%%PLIST_MYEMBOSS%%emboss/share/EMBOSS/doc/html/embassy/myseq/myseq.html
>+%%PLIST_MYEMBOSS%%emboss/share/EMBOSS/doc/programs/text/myseq.txt
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>+%%PLIST_PHYLIP%%emboss/share/EMBOSS/doc/html/embassy/phylipnew/fmove.html
>+%%PLIST_PHYLIP%%emboss/share/EMBOSS/doc/html/embassy/phylipnew/fneighbor.html
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>+%%PLIST_PHYLIP%%emboss/share/EMBOSS/doc/html/embassy/phylipnew/fpenny.html
>+%%PLIST_PHYLIP%%emboss/share/EMBOSS/doc/html/embassy/phylipnew/fproml.html
>+%%PLIST_PHYLIP%%emboss/share/EMBOSS/doc/html/embassy/phylipnew/fpromlk.html
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>+%%PLIST_PHYLIP%%emboss/share/EMBOSS/doc/html/embassy/phylipnew/fseqboot.html
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>+%%PLIST_PHYLIP%%emboss/share/EMBOSS/doc/html/embassy/phylipnew/ftreedist.html
>+%%PLIST_PHYLIP%%emboss/share/EMBOSS/doc/html/embassy/phylipnew/ftreedistpair.html
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>+%%PLIST_PHYLIP%%emboss/share/EMBOSS/doc/programs/text/fdrawgram.txt
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>+%%PLIST_PHYLIP%%emboss/share/EMBOSS/doc/programs/text/fpenny.txt
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>+%%PLIST_PHYLIP%%emboss/share/PHYLIP/data/phylipnew/font1
>+%%PLIST_PHYLIP%%emboss/share/PHYLIP/data/phylipnew/font2
>+%%PLIST_PHYLIP%%emboss/share/PHYLIP/data/phylipnew/font3
>+%%PLIST_PHYLIP%%emboss/share/PHYLIP/data/phylipnew/font4
>+%%PLIST_PHYLIP%%emboss/share/PHYLIP/data/phylipnew/font5
>+%%PLIST_PHYLIP%%emboss/share/PHYLIP/data/phylipnew/font6
>+%%PLIST_SIGNATURE%%emboss/bin/libgen
>+%%PLIST_SIGNATURE%%emboss/bin/matgen3d
>+%%PLIST_SIGNATURE%%emboss/bin/rocplot
>+%%PLIST_SIGNATURE%%emboss/bin/rocon
>+%%PLIST_SIGNATURE%%emboss/bin/siggen
>+%%PLIST_SIGNATURE%%emboss/bin/siggenlig
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>+%%PLIST_SIGNATURE%%emboss/bin/sigscanlig
>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/acd/libgen.acd
>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/acd/matgen3d.acd
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>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/acd/siggen.acd
>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/acd/siggenlig.acd
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>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/acd/sigscanlig.acd
>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/doc/html/embassy/signature/index.html
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>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/doc/html/embassy/signature/matgen3d.html
>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/doc/html/embassy/signature/rocon.html
>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/doc/html/embassy/signature/rocplot.html
>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/doc/html/embassy/signature/siggen.html
>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/doc/html/embassy/signature/siggenlig.html
>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/doc/html/embassy/signature/sigscan.html
>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/doc/html/embassy/signature/sigscanlig.html
>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/doc/programs/text/libgen.txt
>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/doc/programs/text/matgen3d.txt
>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/doc/programs/text/rocon.txt
>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/doc/programs/text/rocplot.txt
>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/doc/programs/text/siggen.txt
>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/doc/programs/text/siggenlig.txt
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>+%%PLIST_SIGNATURE%%emboss/share/EMBOSS/doc/programs/text/sigscanlig.txt
>+%%PLIST_SRTRUCTURE%%emboss/bin/contacts
>+%%PLIST_SRTRUCTURE%%emboss/bin/domainer
>+%%PLIST_SRTRUCTURE%%emboss/bin/hetparse
>+%%PLIST_SRTRUCTURE%%emboss/bin/interface
>+%%PLIST_SRTRUCTURE%%emboss/bin/pdbparse
>+%%PLIST_SRTRUCTURE%%emboss/bin/pdbplus
>+%%PLIST_SRTRUCTURE%%emboss/bin/pdbtosp
>+%%PLIST_SRTRUCTURE%%emboss/bin/sites
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/acd/contacts.acd
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/acd/domainer.acd
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/acd/hetparse.acd
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/acd/interface.acd
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/acd/pdbparse.acd
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/acd/pdbplus.acd
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/acd/pdbtosp.acd
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/acd/sites.acd
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/doc/html/embassy/structure/index.html
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/doc/html/embassy/structure/contacts.html
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/doc/html/embassy/structure/domainer.html
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/doc/html/embassy/structure/hetparse.html
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/doc/html/embassy/structure/interface.html
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/doc/html/embassy/structure/pdbparse.html
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/doc/html/embassy/structure/pdbplus.html
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/doc/html/embassy/structure/pdbtosp.html
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/doc/html/embassy/structure/sites.html
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/doc/programs/text/contacts.txt
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/doc/programs/text/domainer.txt
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/doc/programs/text/hetparse.txt
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/doc/programs/text/interface.txt
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/doc/programs/text/pdbparse.txt
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/doc/programs/text/pdbplus.txt
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/doc/programs/text/pdbtosp.txt
>+%%PLIST_SRTRUCTURE%%emboss/share/EMBOSS/doc/programs/text/sites.txt
>+%%PLIST_TOPO%%emboss/bin/topo
>+%%PLIST_TOPO%%emboss/share/EMBOSS/acd/topo.acd
>+%%PLIST_TOPO%%emboss/share/EMBOSS/doc/html/embassy/topo/index.html
>+%%PLIST_TOPO%%emboss/share/EMBOSS/doc/html/embassy/topo/topo.html
>+%%PLIST_TOPO%%emboss/share/EMBOSS/doc/programs/text/topo.txt
>+%%PLIST_VIENNA%%emboss/bin/vrnaalifold
>+%%PLIST_VIENNA%%emboss/bin/vrnacofoldpf
>+%%PLIST_VIENNA%%emboss/bin/vrnaevalpair
>+%%PLIST_VIENNA%%emboss/bin/vrnainverse
>+%%PLIST_VIENNA%%emboss/bin/vrnaalifoldpf
>+%%PLIST_VIENNA%%emboss/bin/vrnadistance
>+%%PLIST_VIENNA%%emboss/bin/vrnafold
>+%%PLIST_VIENNA%%emboss/bin/vrnalfold
>+%%PLIST_VIENNA%%emboss/bin/vrnacofold
>+%%PLIST_VIENNA%%emboss/bin/vrnaduplex
>+%%PLIST_VIENNA%%emboss/bin/vrnafoldpf
>+%%PLIST_VIENNA%%emboss/bin/vrnaplot
>+%%PLIST_VIENNA%%emboss/bin/vrnacofoldconc
>+%%PLIST_VIENNA%%emboss/bin/vrnaeval
>+%%PLIST_VIENNA%%emboss/bin/vrnaheat
>+%%PLIST_VIENNA%%emboss/bin/vrnasubopt
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/acd/vrnaalifold.acd
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/acd/vrnadistance.acd
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/acd/vrnafoldpf.acd
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/acd/vrnaplot.acd
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/acd/vrnaalifoldpf.acd
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/acd/vrnaduplex.acd
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/acd/vrnaheat.acd
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/acd/vrnasubopt.acd
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/acd/vrnacofold.acd
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/acd/vrnaeval.acd
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/acd/vrnainverse.acd
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/acd/vrnacofoldconc.acd
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/acd/vrnaevalpair.acd
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/acd/vrnalfold.acd
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/acd/vrnacofoldpf.acd
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/acd/vrnafold.acd
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/acd/vrnapaln.acd
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/html/embassy/vienna/index.html
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/html/embassy/vienna/vrnaalifold.html
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/html/embassy/vienna/vrnaalifoldpf.html
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/html/embassy/vienna/vrnacofold.html
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/html/embassy/vienna/vrnacofoldconc.html
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/html/embassy/vienna/vrnacofoldpf.html
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/html/embassy/vienna/vrnadistance.html
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/html/embassy/vienna/vrnaduplex.html
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/html/embassy/vienna/vrnaeval.html
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/html/embassy/vienna/vrnaevalpair.html
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/html/embassy/vienna/vrnafold.html
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/html/embassy/vienna/vrnafoldpf.html
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/html/embassy/vienna/vrnaheat.html
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/html/embassy/vienna/vrnainverse.html
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/html/embassy/vienna/vrnalfold.html
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/html/embassy/vienna/vrnaplot.html
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/html/embassy/vienna/vrnasubopt.html
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/programs/text/vrnaalifold.txt
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/programs/text/vrnaalifoldpf.txt
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/programs/text/vrnacofold.txt
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/programs/text/vrnacofoldconc.txt
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/programs/text/vrnacofoldpf.txt
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/programs/text/vrnadistance.txt
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/programs/text/vrnaduplex.txt
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/programs/text/vrnaeval.txt
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/programs/text/vrnaevalpair.txt
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/programs/text/vrnafold.txt
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/programs/text/vrnafoldpf.txt
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/programs/text/vrnaheat.txt
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/programs/text/vrnainverse.txt
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/programs/text/vrnalfold.txt
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/programs/text/vrnaplot.txt
>+%%PLIST_VIENNA%%emboss/share/EMBOSS/doc/programs/text/vrnasubopt.txt
>+%%PLIST_VIENNA%%emboss/lib/libviennarna.so.1
>+%%PLIST_VIENNA%%emboss/lib/libviennarna.so
>+%%PLIST_VIENNA%%emboss/lib/libviennarna.la
>+%%PLIST_VIENNA%%emboss/lib/libviennarna.a

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Attachments on bug 122437: 86064 | 86065