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(-)emboss/Makefile (-20 / +15 lines)
Lines 6-31 Link Here
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#
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#
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7
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PORTNAME=	emboss
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PORTNAME=	emboss
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PORTVERSION=	3.0.0
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PORTVERSION=	5.0.0
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PORTREVISION=	2
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RELEASE=	${PORTNAME:U}-${PORTVERSION}
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CATEGORIES=	biology
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CATEGORIES=	biology
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MASTER_SITES=	ftp://emboss.open-bio.org/pub/EMBOSS/ \
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MASTER_SITES=	ftp://emboss.open-bio.org/pub/EMBOSS/ \
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		ftp://ftp.uk.embnet.org/pub/EMBOSS/ \
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		ftp://ftp.es.embnet.org/pub/software/emboss/EMBOSS/ \
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		ftp://ftp.ebi.ac.uk/pub/software/unix/EMBOSS/
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		ftp://ftp.ebi.ac.uk/pub/software/unix/EMBOSS/
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DISTNAME=	${PORTNAME:U}-${PORTVERSION}
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DISTNAME=	${RELEASE}
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DISTFILES=	${PORTNAME:U}-${PORTVERSION}${EXTRACT_SUFX}
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DISTFILES=	${RELEASE}${EXTRACT_SUFX}
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DIST_SUBDIR=	${PORTNAME}
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DIST_SUBDIR=	${PORTNAME}
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PATCH_WRKSRC=	${WRKDIR}
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MAINTAINER=	fernan@iib.unsam.edu.ar
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MAINTAINER=	fernan@iib.unsam.edu.ar
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COMMENT=	A collection of open source tools for genetic sequence analysis
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COMMENT=	A collection of open source tools for genetic sequence analysis
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BUILD_DEPENDS=	clustalw:${PORTSDIR}/biology/clustalw \
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BUILD_DEPENDS=	clustalw:${PORTSDIR}/biology/clustalw \
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		primer3:${PORTSDIR}/biology/primer3
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		primer3:${PORTSDIR}/biology/primer3
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LIB_DEPENDS=	gd.4:${PORTSDIR}/graphics/gd \
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		png.5:${PORTSDIR}/graphics/png
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CONFLICTS=	qmail-ldap-[0-9]* digest-[0-9]*
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CONFLICTS=	qmail-ldap-[0-9]* digest-[0-9]*
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Lines 40-60 Link Here
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SUB_FILES=	pkg-message
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SUB_FILES=	pkg-message
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SUB_LIST=	PREFIX=${PREFIX} DATADIR=${DATADIR}
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SUB_LIST=	PREFIX=${PREFIX} DATADIR=${DATADIR}
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DOCSDIR=	${PREFIX}/share/doc/${PORTNAME:U}
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DOCSDIR=	${PREFIX}/share/${PORTNAME:U}/doc
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DATADIR=	${PREFIX}/share/${PORTNAME:U}
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DATADIR=	${PREFIX}/share/${PORTNAME:U}
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DOC_DIRS=	doc/manuals doc/tutorials doc/programs/text doc/programs/html
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CONFIGURE_ARGS+= --with-docroot=${DOCSDIR}
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CONFIG_FILE=	${WRKSRC}/emboss/emboss.default.template
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post-patch:
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.if defined(WITHOUT_X11)
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.if !defined(NOPORTDOCS)
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USE_XLIB=	yes
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.for DIR in ${DOC_DIRS}
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USE_MOTIF=	yes
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	@ ${REINPLACE_CMD} -e \
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LIB_DEPENDS=	gd.4:${PORTSDIR}/graphics/gd \
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	  's#$$(prefix)/share/$$(PACKAGE)/doc#$$(datadir)/doc/$$(PACKAGE)#' \
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		png.5:${PORTSDIR}/graphics/png
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	  ${WRKSRC}/${DIR}/Makefile.in
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CONFIGURE_ARGS+= --without-x
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.endfor
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.endif
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.endif
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DOC_DIRS=	doc/manuals doc/tutorials doc/programs/text doc/programs/html
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CONFIG_FILE=	${WRKSRC}/emboss/emboss.default.template
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pre-install:
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pre-install:
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	@ ${REINPLACE_CMD} -e 's#%%DATADIR%%#${DATADIR}#' ${CONFIG_FILE}
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	@ ${REINPLACE_CMD} -e 's#%%DATADIR%%#${DATADIR}#' ${CONFIG_FILE}
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(-)emboss/distinfo (-3 / +3 lines)
Lines 1-3 Link Here
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MD5 (emboss/EMBOSS-3.0.0.tar.gz) = fa72feded9ab9272e3e731c09f545dcc
1
MD5 (emboss/EMBOSS-5.0.0.tar.gz) = be4c895220ad34afd65d450ba7d8e34b
2
SHA256 (emboss/EMBOSS-3.0.0.tar.gz) = 47a51ba7aeb9f6e7f4cd23c28cffad7c6d28432e92f37d6f08121791ef894dea
2
SHA256 (emboss/EMBOSS-5.0.0.tar.gz) = 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae
3
SIZE (emboss/EMBOSS-3.0.0.tar.gz) = 16257908
3
SIZE (emboss/EMBOSS-5.0.0.tar.gz) = 20666560
(-)emboss/pkg-descr (-6 / +2 lines)
Lines 12-23 Link Here
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EMBASSY packages are third party applications which have been integrated with
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EMBASSY packages are third party applications which have been integrated with
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the EMBOSS suite, but which are not included in the base EMBOSS distribution
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the EMBOSS suite, but which are not included in the base EMBOSS distribution
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for licensing or other reasons.  This port includes the currently available
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for licensing or other reasons. The EMBASSY packages live in the
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EMBASSY applications.  During an interactive install the user will be asked
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biology/embassy port. 
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to choose which of these will be installed (default: all).  Note that the
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EMBASSY versions of PHYLIP and HMMER should not clash with the standalone
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versions (also in ports/biology) due to the fact that their binaries have been
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renamed.
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WWW: http://www.emboss.org/
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WWW: http://www.emboss.org/
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(-)emboss/pkg-plist (-754 / +533 lines)
Lines 6-11 Link Here
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bin/acdtrace
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bin/acdtrace
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bin/acdvalid
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bin/acdvalid
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bin/antigenic
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bin/antigenic
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bin/backtranambig
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bin/backtranseq
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bin/backtranseq
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bin/banana
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bin/banana
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bin/biosed
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bin/biosed
Lines 43-48 Link Here
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bin/dotpath
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bin/dotpath
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bin/dottup
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bin/dottup
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bin/dreg
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bin/dreg
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bin/edialign
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bin/einverted
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bin/einverted
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bin/embossdata
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bin/embossdata
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bin/embossversion
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bin/embossversion
Lines 54-59 Link Here
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bin/equicktandem
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bin/equicktandem
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bin/est2genome
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bin/est2genome
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bin/etandem
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bin/etandem
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bin/extractalign
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bin/extractfeat
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bin/extractfeat
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bin/extractseq
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bin/extractseq
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bin/findkm
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bin/findkm
Lines 73-78 Link Here
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bin/jembossctl
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bin/jembossctl
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bin/lindna
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bin/lindna
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bin/listor
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bin/listor
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bin/makenucseq
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bin/makeprotseq
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bin/marscan
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bin/marscan
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bin/maskfeat
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bin/maskfeat
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bin/maskseq
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bin/maskseq
Lines 138-148 Link Here
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bin/sirna
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bin/sirna
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bin/sixpack
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bin/sixpack
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bin/skipseq
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bin/skipseq
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bin/syco
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bin/splitter
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bin/splitter
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bin/stretcher
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bin/stretcher
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bin/stssearch
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bin/stssearch
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bin/supermatcher
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bin/supermatcher
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bin/syco
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bin/tcode
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bin/tcode
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bin/textsearch
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bin/textsearch
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bin/tfextract
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bin/tfextract
Lines 160-181 Link Here
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bin/whichdb
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bin/whichdb
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bin/wobble
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bin/wobble
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bin/wordcount
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bin/wordcount
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bin/wordfinder
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bin/wordmatch
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bin/wordmatch
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bin/wossname
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bin/wossname
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bin/yank
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bin/yank
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bin/runJemboss.csh
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bin/runJemboss.csh
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include/drivers.h
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include/eplplot/drivers.h
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include/pdf.h
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include/eplplot/pdf.h
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include/plcore.h
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include/eplplot/plcore.h
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include/plevent.h
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include/eplplot/plevent.h
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include/plplotP.h
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include/eplplot/plplotP.h
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include/plxwd.h
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include/eplplot/plxwd.h
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include/metadefs.h
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include/eplplot/metadefs.h
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include/plConfig.h
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include/eplplot/plConfig.h
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include/pldebug.h
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include/eplplot/pldebug.h
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include/plplot.h
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include/eplplot/plplot.h
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include/plstrm.h
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include/eplplot/plstrm.h
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include/plDevs.h
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include/eplplot/plDevs.h
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include/eplplot/disptab.h
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include/eplplot/pldll.h
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include/eplplot/plhershey-unicode.h
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include/eplplot/ps.h
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include/eplplot/plunicode-type1.h
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include/eplplot/plfci-type1.h
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include/ajax.h
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include/ajax.h
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include/ajarch.h
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include/ajarch.h
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include/ajdefine.h
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include/ajdefine.h
Lines 188-193 Link Here
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include/ajcod.h
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include/ajcod.h
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include/ajdan.h
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include/ajdan.h
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include/ajdmx.h
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include/ajdmx.h
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include/ajdom.h
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include/ajdomain.h
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include/ajdomain.h
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include/ajexcept.h
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include/ajexcept.h
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include/ajfeat.h
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include/ajfeat.h
Lines 207-212 Link Here
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include/ajmess.h
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include/ajmess.h
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include/ajnam.h
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include/ajnam.h
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include/ajnexus.h
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include/ajnexus.h
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include/ajpat.h
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include/ajpdb.h
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include/ajpdb.h
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include/ajpdbio.h
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include/ajpdbio.h
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include/ajphylo.h
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include/ajphylo.h
Lines 255-970 Link Here
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include/embmol.h
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include/embmol.h
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include/embnmer.h
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include/embnmer.h
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include/embpat.h
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include/embpat.h
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include/embpatlist.h
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include/embprop.h
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include/embprop.h
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include/embpdb.h
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include/embpdb.h
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include/embread.h
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include/embread.h
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include/embsig.h
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include/embsig.h
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include/embshow.h
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include/embshow.h
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include/embword.h
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include/embword.h
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lib/libplplot.so.5
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lib/libeplplot.so.5
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lib/libplplot.so
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lib/libeplplot.so
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lib/libplplot.la
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lib/libeplplot.la
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lib/libplplot.a
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lib/libeplplot.a
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lib/libajax.so.3
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lib/libajax.so.5
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lib/libajax.so
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lib/libajax.so
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lib/libajax.la
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lib/libajax.la
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lib/libajax.a
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lib/libajax.a
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lib/libajaxg.so.3
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lib/libajaxg.so.5
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lib/libajaxg.so
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lib/libajaxg.so
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lib/libajaxg.la
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lib/libajaxg.la
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lib/libajaxg.a
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lib/libajaxg.a
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lib/libnucleus.so.3
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lib/libnucleus.so.5
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lib/libnucleus.so
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lib/libnucleus.so
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lib/libnucleus.la
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lib/libnucleus.la
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lib/libnucleus.a
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lib/libnucleus.a
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%%PORTDOCS%%%%DOCSDIR%%/manuals/admin.sty
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%%PORTDOCS%%%%DOCSDIR%%/manuals/admin.tex
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%%PORTDOCS%%%%DOCSDIR%%/manuals/admin.aux
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%%PORTDOCS%%%%DOCSDIR%%/manuals/admin.dvi
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%%PORTDOCS%%%%DOCSDIR%%/manuals/admin.log
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%%PORTDOCS%%%%DOCSDIR%%/manuals/admin.pdf
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%%PORTDOCS%%%%DOCSDIR%%/manuals/admin.ps
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%%PORTDOCS%%%%DOCSDIR%%/manuals/admin.toc
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%%PORTDOCS%%%%DOCSDIR%%/manuals/adminguide.tar.gz
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%%PORTDOCS%%%%DOCSDIR%%/manuals/domainatrix.doc
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%%PORTDOCS%%%%DOCSDIR%%/manuals/program.ps.gz
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%%PORTDOCS%%%%DOCSDIR%%/manuals/EMBOSS-FreeBSD-HOWTO.txt
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%%PORTDOCS%%%%DOCSDIR%%/manuals/emboss_qg.pdf
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%%PORTDOCS%%%%DOCSDIR%%/manuals/emboss_qg.ps
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%%PORTDOCS%%%%DOCSDIR%%/manuals/emboss.sty
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%%PORTDOCS%%%%DOCSDIR%%/manuals/fdl.txt
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/lindna.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/listor.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/marscan.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/maskfeat.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/maskseq.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/matcher.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/matgen3d.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/megamerger.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/meme.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/menus_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/merger.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/msbar.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/mse.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/mwcontam.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/mwfilter.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/myseq.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/nawalign.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/nawalignrunner.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/needle.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/needlerunner.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/newcpgreport.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/newcpgseek.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/newseq.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/noreturn.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/notseq.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/nthseq.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_2d_structure_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_codon_usage_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_codon_usage_nucleic_gene_finding_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_composition_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_cpg_islands_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_gene_finding_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_motifs_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_mutation_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_primers_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_profiles_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_repeats_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_restriction_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_transcription_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_translation_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/octanol.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/oddcomp.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/palindrome.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/pasteseq.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/patmatdb.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/patmatmotifs.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/pdbparse.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/pdbplus.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/pdbtosp.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepcoil.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepinfo.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepnet.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepstats.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepwheel.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepwindow.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepwindowall.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/phylogeny_consensus_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/phylogeny_continuous_characters_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/phylogeny_discrete_characters_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/phylogeny_distance_matrix_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/phylogeny_gene_frequencies_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/phylogeny_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/phylogeny_molecular_sequence_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/phylogeny_tree_drawing_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/plotcon.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/plotorf.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/polydot.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/preg.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/prettyplot.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/prettyseq.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/primersearch.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/printsextract.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/profit.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/prophecy.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/prophet.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/prosextract.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/protein_2d_structure_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/protein_3d_structure_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/protein_composition_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/protein_motifs_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/protein_mutation_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/protein_profiles_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/protein_sequence_alignment_group.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/pscan.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/psiphi.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/rebaseextract.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/recoder.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/redata.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/remap.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/restover.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/restrict.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/revseq.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/rocon.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/rocplot.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/scope.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/scopparse.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/scorecmapdir.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/scorer.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/scorerrunner.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/seealso.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqalign.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqfraggle.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqmatchall.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqnr.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqret.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqretsplit.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqsearch.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqsort.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqwords.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/showalign.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/showdb.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/showfeat.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/showorf.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/showseq.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/shuffleseq.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/sigcleave.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/siggen.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/siggenlig.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/sigscan.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/sigscanlig.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/silent.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/sirna.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/sites.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/sixpack.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/skipseq.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/splitter.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/ssematch.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/stretcher.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/stssearch.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/substitute.html
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%%PORTDOCS%%%%DOCSDIR%%/programs/html/tcode.html
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484
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487
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495
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501
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502
%%PORTDOCS%%%%DOCSDIR%%/programs/html/allversusall.html
503
%%PORTDOCS%%%%DOCSDIR%%/programs/html/backtranseq.html
504
%%PORTDOCS%%%%DOCSDIR%%/programs/html/banana.html
505
%%PORTDOCS%%%%DOCSDIR%%/programs/html/biosed.html
506
%%PORTDOCS%%%%DOCSDIR%%/programs/html/btwisted.html
507
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cai.html
508
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509
%%PORTDOCS%%%%DOCSDIR%%/programs/html/chaos.html
510
%%PORTDOCS%%%%DOCSDIR%%/programs/html/charge.html
511
%%PORTDOCS%%%%DOCSDIR%%/programs/html/checktrans.html
512
%%PORTDOCS%%%%DOCSDIR%%/programs/html/chips.html
513
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cirdna.html
514
%%PORTDOCS%%%%DOCSDIR%%/programs/html/codcmp.html
515
%%PORTDOCS%%%%DOCSDIR%%/programs/html/codcopy.html
516
%%PORTDOCS%%%%DOCSDIR%%/programs/html/coderet.html
517
%%PORTDOCS%%%%DOCSDIR%%/programs/html/comparator.html
518
%%PORTDOCS%%%%DOCSDIR%%/programs/html/compseq.html
519
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cons.html
520
%%PORTDOCS%%%%DOCSDIR%%/programs/html/contactalign.html
521
%%PORTDOCS%%%%DOCSDIR%%/programs/html/contacts.html
522
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cpgplot.html
523
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cpgreport.html
524
%%PORTDOCS%%%%DOCSDIR%%/programs/html/crystalball.html
525
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cusp.html
526
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cutgextract.html
527
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cutseq.html
528
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dan.html
529
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbiblast.html
530
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbifasta.html
531
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbiflat.html
532
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbigcg.html
533
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbxfasta.html
534
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbxflat.html
535
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbxgcg.html
536
%%PORTDOCS%%%%DOCSDIR%%/programs/html/degapseq.html
537
%%PORTDOCS%%%%DOCSDIR%%/programs/html/degapseqrunner.html
538
%%PORTDOCS%%%%DOCSDIR%%/programs/html/descseq.html
539
%%PORTDOCS%%%%DOCSDIR%%/programs/html/diffseq.html
540
%%PORTDOCS%%%%DOCSDIR%%/programs/html/digest.html
541
%%PORTDOCS%%%%DOCSDIR%%/programs/html/display_group.html
542
%%PORTDOCS%%%%DOCSDIR%%/programs/html/distmat.html
543
%%PORTDOCS%%%%DOCSDIR%%/programs/html/domainalign.html
544
%%PORTDOCS%%%%DOCSDIR%%/programs/html/domainer.html
545
%%PORTDOCS%%%%DOCSDIR%%/programs/html/domainnr.html
546
%%PORTDOCS%%%%DOCSDIR%%/programs/html/domainrep.html
547
%%PORTDOCS%%%%DOCSDIR%%/programs/html/domainreso.html
548
%%PORTDOCS%%%%DOCSDIR%%/programs/html/domainseqs.html
549
%%PORTDOCS%%%%DOCSDIR%%/programs/html/domainsse.html
550
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dotmatcher.html
551
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dotpath.html
552
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dottup.html
553
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dreg.html
554
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ealistat.html
555
%%PORTDOCS%%%%DOCSDIR%%/programs/html/eclique.html
556
%%PORTDOCS%%%%DOCSDIR%%/programs/html/econsense.html
557
%%PORTDOCS%%%%DOCSDIR%%/programs/html/econtml.html
558
%%PORTDOCS%%%%DOCSDIR%%/programs/html/econtrast.html
559
%%PORTDOCS%%%%DOCSDIR%%/programs/html/edit_group.html
560
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ednacomp.html
561
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ednadist.html
562
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ednainvar.html
563
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ednaml.html
564
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ednamlk.html
565
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ednapars.html
566
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ednapenny.html
567
%%PORTDOCS%%%%DOCSDIR%%/programs/html/edollop.html
568
%%PORTDOCS%%%%DOCSDIR%%/programs/html/edolpenny.html
569
%%PORTDOCS%%%%DOCSDIR%%/programs/html/efactor.html
570
%%PORTDOCS%%%%DOCSDIR%%/programs/html/efitch.html
571
%%PORTDOCS%%%%DOCSDIR%%/programs/html/egendist.html
572
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ehmmalign.html
573
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ehmmbuild.html
574
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ehmmcalibrate.html
575
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ehmmconvert.html
576
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ehmmemit.html
577
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ehmmfetch.html
578
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ehmmindex.html
579
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ehmmpfam.html
580
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ehmmsearch.html
581
%%PORTDOCS%%%%DOCSDIR%%/programs/html/einverted.html
582
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ekitsch.html
583
%%PORTDOCS%%%%DOCSDIR%%/programs/html/embossdata.html
584
%%PORTDOCS%%%%DOCSDIR%%/programs/html/embossversion.html
585
%%PORTDOCS%%%%DOCSDIR%%/programs/html/emix.html
586
%%PORTDOCS%%%%DOCSDIR%%/programs/html/emma.html
587
%%PORTDOCS%%%%DOCSDIR%%/programs/html/emnu.html
588
%%PORTDOCS%%%%DOCSDIR%%/programs/html/emowse.html
589
%%PORTDOCS%%%%DOCSDIR%%/programs/html/eneighbor.html
590
%%PORTDOCS%%%%DOCSDIR%%/programs/html/entret.html
591
%%PORTDOCS%%%%DOCSDIR%%/programs/html/enzyme_kinetics_group.html
592
%%PORTDOCS%%%%DOCSDIR%%/programs/html/epenny.html
593
%%PORTDOCS%%%%DOCSDIR%%/programs/html/epestfind.html
594
%%PORTDOCS%%%%DOCSDIR%%/programs/html/eprimer3.html
595
%%PORTDOCS%%%%DOCSDIR%%/programs/html/eprotdist.html
596
%%PORTDOCS%%%%DOCSDIR%%/programs/html/eprotpars.html
597
%%PORTDOCS%%%%DOCSDIR%%/programs/html/equicktandem.html
598
%%PORTDOCS%%%%DOCSDIR%%/programs/html/erestml.html
599
%%PORTDOCS%%%%DOCSDIR%%/programs/html/eseqboot.html
600
%%PORTDOCS%%%%DOCSDIR%%/programs/html/esim4.html
601
%%PORTDOCS%%%%DOCSDIR%%/programs/html/est2genome.html
602
%%PORTDOCS%%%%DOCSDIR%%/programs/html/etandem.html
603
%%PORTDOCS%%%%DOCSDIR%%/programs/html/extractfeat.html
604
%%PORTDOCS%%%%DOCSDIR%%/programs/html/extractseq.html
605
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fclique.html
606
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fconsense.html
607
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fcontml.html
608
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fcontrast.html
609
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdiscboot.html
610
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdnacomp.html
611
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdnadist.html
612
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdnainvar.html
613
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdnaml.html
614
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdnamlk.html
615
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdnamove.html
616
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdnapars.html
617
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdnapenny.html
618
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdollop.html
619
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdolmove.html
620
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdolpenny.html
621
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdrawgram.html
622
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdrawtree.html
623
%%PORTDOCS%%%%DOCSDIR%%/programs/html/feature_tables_group.html
624
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ffactor.html
625
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ffitch.html
626
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ffreqboot.html
627
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fgendist.html
628
%%PORTDOCS%%%%DOCSDIR%%/programs/html/findkm.html
629
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fkitsch.html
630
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fmix.html
631
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fmove.html
632
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fneighbor.html
633
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fpars.html
634
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fpenny.html
635
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fproml.html
636
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fpromlk.html
637
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fprotdist.html
638
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fprotpars.html
639
%%PORTDOCS%%%%DOCSDIR%%/programs/html/freak.html
640
%%PORTDOCS%%%%DOCSDIR%%/programs/html/frestboot.html
641
%%PORTDOCS%%%%DOCSDIR%%/programs/html/frestdist.html
642
%%PORTDOCS%%%%DOCSDIR%%/programs/html/frestml.html
643
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fretree.html
644
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fseqboot.html
645
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fseqbootall.html
646
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ftreedist.html
647
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ftreedistpair.html
648
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fuzznuc.html
649
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fuzzpro.html
650
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fuzztran.html
651
%%PORTDOCS%%%%DOCSDIR%%/programs/html/garnier.html
652
%%PORTDOCS%%%%DOCSDIR%%/programs/html/geecee.html
653
%%PORTDOCS%%%%DOCSDIR%%/programs/html/getorf.html
654
%%PORTDOCS%%%%DOCSDIR%%/programs/html/groups.html
655
%%PORTDOCS%%%%DOCSDIR%%/programs/html/helixturnhelix.html
656
%%PORTDOCS%%%%DOCSDIR%%/programs/html/hetparse.html
657
%%PORTDOCS%%%%DOCSDIR%%/programs/html/hmm_group.html
658
%%PORTDOCS%%%%DOCSDIR%%/programs/html/hmoment.html
659
%%PORTDOCS%%%%DOCSDIR%%/programs/html/iep.html
660
%%PORTDOCS%%%%DOCSDIR%%/programs/html/index.html
661
%%PORTDOCS%%%%DOCSDIR%%/programs/html/infoalign.html
662
%%PORTDOCS%%%%DOCSDIR%%/programs/html/information_group.html
663
%%PORTDOCS%%%%DOCSDIR%%/programs/html/infoseq.html
664
%%PORTDOCS%%%%DOCSDIR%%/programs/html/interface.html
665
%%PORTDOCS%%%%DOCSDIR%%/programs/html/isochore.html
666
%%PORTDOCS%%%%DOCSDIR%%/programs/html/jembossctl.html
667
%%PORTDOCS%%%%DOCSDIR%%/programs/html/libgen.html
668
%%PORTDOCS%%%%DOCSDIR%%/programs/html/libscan.html
669
%%PORTDOCS%%%%DOCSDIR%%/programs/text/jembossctl.txt
670
%%PORTDOCS%%%%DOCSDIR%%/programs/text/libgen.txt
671
%%PORTDOCS%%%%DOCSDIR%%/programs/text/libscan.txt
672
%%PORTDOCS%%%%DOCSDIR%%/programs/text/lindna.txt
673
%%PORTDOCS%%%%DOCSDIR%%/programs/text/listor.txt
674
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675
%%PORTDOCS%%%%DOCSDIR%%/programs/text/maskfeat.txt
676
%%PORTDOCS%%%%DOCSDIR%%/programs/text/maskseq.txt
677
%%PORTDOCS%%%%DOCSDIR%%/programs/text/matcher.txt
678
%%PORTDOCS%%%%DOCSDIR%%/programs/text/matgen3d.txt
679
%%PORTDOCS%%%%DOCSDIR%%/programs/text/megamerger.txt
680
%%PORTDOCS%%%%DOCSDIR%%/programs/text/meme.txt
681
%%PORTDOCS%%%%DOCSDIR%%/programs/text/merger.txt
682
%%PORTDOCS%%%%DOCSDIR%%/programs/text/msbar.txt
683
%%PORTDOCS%%%%DOCSDIR%%/programs/text/mse.txt
684
%%PORTDOCS%%%%DOCSDIR%%/programs/text/mwcontam.txt
685
%%PORTDOCS%%%%DOCSDIR%%/programs/text/mwfilter.txt
686
%%PORTDOCS%%%%DOCSDIR%%/programs/text/myseq.txt
687
%%PORTDOCS%%%%DOCSDIR%%/programs/text/nawalign.txt
688
%%PORTDOCS%%%%DOCSDIR%%/programs/text/nawalignrunner.txt
689
%%PORTDOCS%%%%DOCSDIR%%/programs/text/needle.txt
690
%%PORTDOCS%%%%DOCSDIR%%/programs/text/needlerunner.txt
691
%%PORTDOCS%%%%DOCSDIR%%/programs/text/newcpgreport.txt
692
%%PORTDOCS%%%%DOCSDIR%%/programs/text/newcpgseek.txt
693
%%PORTDOCS%%%%DOCSDIR%%/programs/text/newseq.txt
694
%%PORTDOCS%%%%DOCSDIR%%/programs/text/noreturn.txt
695
%%PORTDOCS%%%%DOCSDIR%%/programs/text/notseq.txt
696
%%PORTDOCS%%%%DOCSDIR%%/programs/text/nthseq.txt
697
%%PORTDOCS%%%%DOCSDIR%%/programs/text/octanol.txt
698
%%PORTDOCS%%%%DOCSDIR%%/programs/text/oddcomp.txt
699
%%PORTDOCS%%%%DOCSDIR%%/programs/text/palindrome.txt
700
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pasteseq.txt
701
%%PORTDOCS%%%%DOCSDIR%%/programs/text/patmatdb.txt
702
%%PORTDOCS%%%%DOCSDIR%%/programs/text/patmatmotifs.txt
703
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pdbparse.txt
704
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pdbplus.txt
705
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pdbtosp.txt
706
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepcoil.txt
707
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepinfo.txt
708
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepnet.txt
709
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepstats.txt
710
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepwheel.txt
711
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepwindow.txt
712
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepwindowall.txt
713
%%PORTDOCS%%%%DOCSDIR%%/programs/text/plotcon.txt
714
%%PORTDOCS%%%%DOCSDIR%%/programs/text/plotorf.txt
715
%%PORTDOCS%%%%DOCSDIR%%/programs/text/polydot.txt
716
%%PORTDOCS%%%%DOCSDIR%%/programs/text/preg.txt
717
%%PORTDOCS%%%%DOCSDIR%%/programs/text/prettyplot.txt
718
%%PORTDOCS%%%%DOCSDIR%%/programs/text/prettyseq.txt
719
%%PORTDOCS%%%%DOCSDIR%%/programs/text/primersearch.txt
720
%%PORTDOCS%%%%DOCSDIR%%/programs/text/printsextract.txt
721
%%PORTDOCS%%%%DOCSDIR%%/programs/text/profit.txt
722
%%PORTDOCS%%%%DOCSDIR%%/programs/text/prophecy.txt
723
%%PORTDOCS%%%%DOCSDIR%%/programs/text/prophet.txt
724
%%PORTDOCS%%%%DOCSDIR%%/programs/text/prosextract.txt
725
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pscan.txt
726
%%PORTDOCS%%%%DOCSDIR%%/programs/text/psiphi.txt
727
%%PORTDOCS%%%%DOCSDIR%%/programs/text/rebaseextract.txt
728
%%PORTDOCS%%%%DOCSDIR%%/programs/text/recoder.txt
729
%%PORTDOCS%%%%DOCSDIR%%/programs/text/redata.txt
730
%%PORTDOCS%%%%DOCSDIR%%/programs/text/remap.txt
731
%%PORTDOCS%%%%DOCSDIR%%/programs/text/restover.txt
732
%%PORTDOCS%%%%DOCSDIR%%/programs/text/restrict.txt
733
%%PORTDOCS%%%%DOCSDIR%%/programs/text/revseq.txt
734
%%PORTDOCS%%%%DOCSDIR%%/programs/text/rocon.txt
735
%%PORTDOCS%%%%DOCSDIR%%/programs/text/rocplot.txt
736
%%PORTDOCS%%%%DOCSDIR%%/programs/text/scope.txt
737
%%PORTDOCS%%%%DOCSDIR%%/programs/text/scopparse.txt
738
%%PORTDOCS%%%%DOCSDIR%%/programs/text/scorecmapdir.txt
739
%%PORTDOCS%%%%DOCSDIR%%/programs/text/scorer.txt
740
%%PORTDOCS%%%%DOCSDIR%%/programs/text/scorerrunner.txt
741
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seealso.txt
742
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqalign.txt
743
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqfraggle.txt
744
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqmatchall.txt
745
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqnr.txt
746
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqret.txt
747
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqretsplit.txt
748
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%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/TextFieldSink.java
1689
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/TextFieldSink.java
1914
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/JembossComboPopup.java
1690
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/JembossComboPopup.java
1915
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/MultiLineToolTipUI.java
1691
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/MultiLineToolTipUI.java
1692
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/MultiTextField.java
1916
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/PlafMacros.java
1693
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/PlafMacros.java
1917
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/ReportFormat.java
1694
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/ReportFormat.java
1918
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/AlignFormat.java
1695
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/AlignFormat.java
Lines 2006-2033 Link Here
2006
%%DATADIR%%/jemboss/readme.html
1783
%%DATADIR%%/jemboss/readme.html
2007
%%DATADIR%%/jemboss/runJemboss.sh
1784
%%DATADIR%%/jemboss/runJemboss.sh
2008
%%DATADIR%%/jemboss/README
1785
%%DATADIR%%/jemboss/README
2009
%%PORTDOCS%%@dirrm %%DOCSDIR%%/manuals
1786
@dirrm include/eplplot
2010
%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs/html
1787
@dirrm include
2011
%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs/text
2012
%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs
2013
%%PORTDOCS%%@dirrm %%DOCSDIR%%/tutorials
2014
%%PORTDOCS%%@dirrm %%DOCSDIR%%
2015
@dirrm %%DATADIR%%/acd
1788
@dirrm %%DATADIR%%/acd
2016
@dirrm %%DATADIR%%/data/AAINDEX
1789
@dirrmtry %%DATADIR%%/data/AAINDEX
2017
@dirrm %%DATADIR%%/data/CODONS
1790
@dirrmtry %%DATADIR%%/data/CODONS
2018
@dirrm %%DATADIR%%/data/REBASE
1791
@dirrmtry %%DATADIR%%/data/REBASE
2019
@dirrm %%DATADIR%%/data/PRINTS
1792
@dirrmtry %%DATADIR%%/data/PRINTS
2020
@dirrm %%DATADIR%%/data/PROSITE
1793
@dirrmtry %%DATADIR%%/data/PROSITE
2021
@dirrmtry %%DATADIR%%/data
1794
@dirrmtry %%DATADIR%%/data
2022
@dirrm %%DATADIR%%/test/data
1795
@dirrm %%DATADIR%%/test/data
2023
@dirrm %%DATADIR%%/test/embl
1796
@dirrm %%DATADIR%%/test/embl
2024
@dirrm %%DATADIR%%/test/genbank
1797
@dirrm %%DATADIR%%/test/genbank
2025
@dirrm %%DATADIR%%/test/gb
2026
@dirrm %%DATADIR%%/test/pir
1798
@dirrm %%DATADIR%%/test/pir
2027
@dirrm %%DATADIR%%/test/swiss
1799
@dirrm %%DATADIR%%/test/swiss
2028
@dirrm %%DATADIR%%/test/swnew
1800
@dirrm %%DATADIR%%/test/swnew
2029
@dirrm %%DATADIR%%/test/wormpep
1801
@dirrm %%DATADIR%%/test/testdb
2030
@dirrm %%DATADIR%%/test
1802
@dirrm %%DATADIR%%/test
1803
%%PORTDOCS%%@dirrm %%DOCSDIR%%/manuals
1804
%%PORTDOCS%%@dirrm %%DOCSDIR%%/html/emboss/apps
1805
%%PORTDOCS%%@dirrm %%DOCSDIR%%/html/emboss
1806
%%PORTDOCS%%@dirrm %%DOCSDIR%%/html
1807
%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs/text
1808
%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs
1809
%%PORTDOCS%%@dirrm %%DOCSDIR%%/tutorials
1810
%%PORTDOCS%%@dirrm %%DOCSDIR%%
2031
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/filetree
1811
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/filetree
2032
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form
1812
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form
2033
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/sequenceChooser
1813
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/sequenceChooser
Lines 2067-2071 Link Here
2067
@dirrmtry bin
1847
@dirrmtry bin
2068
@dirrmtry include
1848
@dirrmtry include
2069
@dirrmtry lib
1849
@dirrmtry lib
2070
@dirrmtry share/doc
2071
@dirrmtry share
1850
@dirrmtry share

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