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(-)Makefile (-1 / +1 lines)
Lines 6-12 Link Here
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#
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#
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PORTNAME=	biopython
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PORTNAME=	biopython
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PORTVERSION=	1.43
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PORTVERSION=	1.45
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CATEGORIES=	biology python
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CATEGORIES=	biology python
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MASTER_SITES=	http://www.biopython.org/DIST/
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MASTER_SITES=	http://www.biopython.org/DIST/
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PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
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PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
(-)distinfo (-3 / +3 lines)
Lines 1-3 Link Here
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MD5 (biopython-1.43.tar.gz) = 3c275b321bb1db7d8bda764913aaedcd
1
MD5 (biopython-1.45.tar.gz) = 049ff32be28297b77c25624082118629
2
SHA256 (biopython-1.43.tar.gz) = eb424da9efddbf376c31660786ecb34ff893ea752bf7300f4a06d1b8c6ba175b
2
SHA256 (biopython-1.45.tar.gz) = ea9af15729aed1a3eb9d8bc65bced919390b50d0f93622a69ef9aaeb3ff56020
3
SIZE (biopython-1.43.tar.gz) = 3867907
3
SIZE (biopython-1.45.tar.gz) = 3978249
(-)pkg-plist (-22 / +75 lines)
Lines 221-226 Link Here
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%%PYTHON_SITELIBDIR%%/Bio/Encodings/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/Encodings/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/Encodings/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/Encodings/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/Encodings/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/Encodings/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/Entrez/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/Entrez/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/Entrez/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/Enzyme/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/Enzyme/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/Enzyme/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/Enzyme/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/Enzyme/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/Enzyme/__init__.pyo
Lines 338-346 Link Here
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%%PYTHON_SITELIBDIR%%/Bio/Geo/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/Geo/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/Geo/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/Geo/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/Geo/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/Geo/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/Geo/geo_format.py
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%%PYTHON_SITELIBDIR%%/Bio/Geo/geo_format.pyc
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%%PYTHON_SITELIBDIR%%/Bio/Geo/geo_format.pyo
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%%PYTHON_SITELIBDIR%%/Bio/Gobase/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/Gobase/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/Gobase/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/Gobase/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/Gobase/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/Gobase/__init__.pyo
Lines 405-437 Link Here
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Compound/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Compound/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Compound/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Compound/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Compound/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Compound/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Compound/compound_format.py
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Compound/compound_format.pyc
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Compound/compound_format.pyo
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Enzyme/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Enzyme/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Enzyme/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Enzyme/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Enzyme/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Enzyme/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Enzyme/enzyme_format.py
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Enzyme/enzyme_format.pyc
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Enzyme/enzyme_format.pyo
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Map/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Map/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Map/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Map/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Map/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Map/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Map/map_format.py
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Map/map_format.pyc
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/Map/map_format.pyo
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/KEGG/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/Kabat/Record.py
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%%PYTHON_SITELIBDIR%%/Bio/Kabat/Record.pyc
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%%PYTHON_SITELIBDIR%%/Bio/Kabat/Record.pyo
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%%PYTHON_SITELIBDIR%%/Bio/Kabat/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/Kabat/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/Kabat/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/Kabat/kabat_format.py
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%%PYTHON_SITELIBDIR%%/Bio/Kabat/kabat_format.pyc
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%%PYTHON_SITELIBDIR%%/Bio/Kabat/kabat_format.pyo
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%%PYTHON_SITELIBDIR%%/Bio/LocusLink/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/LocusLink/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/LocusLink/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/LocusLink/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/LocusLink/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/LocusLink/__init__.pyo
Lines 688-693 Link Here
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%%PYTHON_SITELIBDIR%%/Bio/PDB/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/PDB/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/PDB/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PDB/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PDB/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/PDB/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/PDB/mmCIF/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/PDB/mmCIF/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PDB/mmCIF/__init__.pyo
691
%%PYTHON_SITELIBDIR%%/Bio/PDB/parse_pdb_header.py
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%%PYTHON_SITELIBDIR%%/Bio/PDB/parse_pdb_header.py
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%%PYTHON_SITELIBDIR%%/Bio/PDB/parse_pdb_header.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PDB/parse_pdb_header.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PDB/parse_pdb_header.pyo
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%%PYTHON_SITELIBDIR%%/Bio/PDB/parse_pdb_header.pyo
Lines 715-720 Link Here
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%%PYTHON_SITELIBDIR%%/Bio/Pathway/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/Pathway/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/Pathway/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/Pathway/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/Pathway/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/Pathway/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/Async/Local.py
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/Async/Local.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/Async/Local.pyo
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/Async/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/Async/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/Async/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/FDist/Async.py
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/FDist/Async.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/FDist/Async.pyo
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/FDist/Controller.py
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/FDist/Controller.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/FDist/Controller.pyo
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/FDist/Utils.py
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/FDist/Utils.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/FDist/Utils.pyo
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/FDist/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/FDist/__init__.pyc
723
%%PYTHON_SITELIBDIR%%/Bio/PopGen/FDist/__init__.pyo
724
%%PYTHON_SITELIBDIR%%/Bio/PopGen/GenePop/Utils.py
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/GenePop/Utils.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/GenePop/Utils.pyo
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/GenePop/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/GenePop/__init__.pyc
729
%%PYTHON_SITELIBDIR%%/Bio/PopGen/GenePop/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/Async.py
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/Async.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/Async.pyo
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/Cache.py
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/Cache.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/Cache.pyo
736
%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/Controller.py
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/Controller.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/Controller.pyo
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/Template.py
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/Template.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/Template.pyo
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/__init__.py
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/__init__.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/__init__.pyo
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/data/bottle.par
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/data/decline_lambda.par
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/data/decline_split.par
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/data/island.par
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/data/simple.par
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/data/split_island.par
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/data/split_ssm_1d.par
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/data/split_ssm_2d.par
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/data/ssm_1d.par
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%%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/data/ssm_2d.par
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%%PYTHON_SITELIBDIR%%/Bio/PropertyManager.py
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%%PYTHON_SITELIBDIR%%/Bio/PropertyManager.py
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%%PYTHON_SITELIBDIR%%/Bio/PropertyManager.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PropertyManager.pyc
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%%PYTHON_SITELIBDIR%%/Bio/PropertyManager.pyo
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%%PYTHON_SITELIBDIR%%/Bio/PropertyManager.pyo
Lines 845-850 Link Here
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%%PYTHON_SITELIBDIR%%/Bio/SeqRecord.py
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%%PYTHON_SITELIBDIR%%/Bio/SeqRecord.py
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%%PYTHON_SITELIBDIR%%/Bio/SeqRecord.pyc
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%%PYTHON_SITELIBDIR%%/Bio/SeqRecord.pyc
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%%PYTHON_SITELIBDIR%%/Bio/SeqRecord.pyo
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%%PYTHON_SITELIBDIR%%/Bio/SeqRecord.pyo
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%%PYTHON_SITELIBDIR%%/Bio/SeqUtils/CheckSum.py
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%%PYTHON_SITELIBDIR%%/Bio/SeqUtils/CheckSum.pyc
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%%PYTHON_SITELIBDIR%%/Bio/SeqUtils/CheckSum.pyo
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%%PYTHON_SITELIBDIR%%/Bio/SeqUtils/lcc.py
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%%PYTHON_SITELIBDIR%%/Bio/SeqUtils/lcc.pyc
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%%PYTHON_SITELIBDIR%%/Bio/SeqUtils/lcc.pyo
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%%PYTHON_SITELIBDIR%%/Bio/SeqUtils/CodonUsage.py
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%%PYTHON_SITELIBDIR%%/Bio/SeqUtils/CodonUsage.py
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%%PYTHON_SITELIBDIR%%/Bio/SeqUtils/CodonUsage.pyc
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%%PYTHON_SITELIBDIR%%/Bio/SeqUtils/CodonUsage.pyc
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%%PYTHON_SITELIBDIR%%/Bio/SeqUtils/CodonUsage.pyo
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%%PYTHON_SITELIBDIR%%/Bio/SeqUtils/CodonUsage.pyo
Lines 1094-1099 Link Here
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%%PYTHON_SITELIBDIR%%/Bio/formatdefs/swissprot.py
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%%PYTHON_SITELIBDIR%%/Bio/formatdefs/swissprot.py
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%%PYTHON_SITELIBDIR%%/Bio/formatdefs/swissprot.pyc
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%%PYTHON_SITELIBDIR%%/Bio/formatdefs/swissprot.pyc
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%%PYTHON_SITELIBDIR%%/Bio/formatdefs/swissprot.pyo
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%%PYTHON_SITELIBDIR%%/Bio/formatdefs/swissprot.pyo
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%%PYTHON_SITELIBDIR%%/Bio/ExPASy.py
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%%PYTHON_SITELIBDIR%%/Bio/ExPASy.pyc
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%%PYTHON_SITELIBDIR%%/Bio/ExPASy.pyo
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%%PYTHON_SITELIBDIR%%/Bio/kNN.py
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%%PYTHON_SITELIBDIR%%/Bio/kNN.py
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%%PYTHON_SITELIBDIR%%/Bio/kNN.pyc
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%%PYTHON_SITELIBDIR%%/Bio/kNN.pyc
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%%PYTHON_SITELIBDIR%%/Bio/kNN.pyo
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%%PYTHON_SITELIBDIR%%/Bio/kNN.pyo
Lines 1213-1218 Link Here
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@dirrm %%PYTHON_SITELIBDIR%%/Bio/EUtils
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@dirrm %%PYTHON_SITELIBDIR%%/Bio/EUtils
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@dirrm %%PYTHON_SITELIBDIR%%/Bio/Emboss
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@dirrm %%PYTHON_SITELIBDIR%%/Bio/Emboss
1215
@dirrm %%PYTHON_SITELIBDIR%%/Bio/Encodings
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@dirrm %%PYTHON_SITELIBDIR%%/Bio/Encodings
1262
@dirrm %%PYTHON_SITELIBDIR%%/Bio/Entrez
1216
@dirrm %%PYTHON_SITELIBDIR%%/Bio/Enzyme
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@dirrm %%PYTHON_SITELIBDIR%%/Bio/Enzyme
1217
@dirrm %%PYTHON_SITELIBDIR%%/Bio/FSSP
1264
@dirrm %%PYTHON_SITELIBDIR%%/Bio/FSSP
1218
@dirrm %%PYTHON_SITELIBDIR%%/Bio/Fasta
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@dirrm %%PYTHON_SITELIBDIR%%/Bio/Fasta
Lines 1234-1240 Link Here
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@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Enzyme
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@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Enzyme
1235
@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Map
1282
@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Map
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@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG
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@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG
1237
@dirrm %%PYTHON_SITELIBDIR%%/Bio/Kabat
1238
@dirrm %%PYTHON_SITELIBDIR%%/Bio/LocusLink
1284
@dirrm %%PYTHON_SITELIBDIR%%/Bio/LocusLink
1239
@dirrm %%PYTHON_SITELIBDIR%%/Bio/MEME
1285
@dirrm %%PYTHON_SITELIBDIR%%/Bio/MEME
1240
@dirrm %%PYTHON_SITELIBDIR%%/Bio/Medline
1286
@dirrm %%PYTHON_SITELIBDIR%%/Bio/Medline
Lines 1248-1253 Link Here
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@dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork/Gene
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@dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork/Gene
1249
@dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork
1295
@dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork
1250
@dirrm %%PYTHON_SITELIBDIR%%/Bio/Nexus
1296
@dirrm %%PYTHON_SITELIBDIR%%/Bio/Nexus
1297
@dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal/data
1298
@dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen/SimCoal
1299
@dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen/GenePop
1300
@dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen/FDist
1301
@dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen/Async
1302
@dirrm %%PYTHON_SITELIBDIR%%/Bio/PopGen
1303
@dirrm %%PYTHON_SITELIBDIR%%/Bio/PDB/mmCIF
1251
@dirrm %%PYTHON_SITELIBDIR%%/Bio/PDB
1304
@dirrm %%PYTHON_SITELIBDIR%%/Bio/PDB
1252
@dirrm %%PYTHON_SITELIBDIR%%/Bio/Parsers
1305
@dirrm %%PYTHON_SITELIBDIR%%/Bio/Parsers
1253
@dirrm %%PYTHON_SITELIBDIR%%/Bio/Pathway/Rep
1306
@dirrm %%PYTHON_SITELIBDIR%%/Bio/Pathway/Rep

Return to bug 125134