# This is a shell archive.  Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file".  Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
#	libsbml
#	libsbml/pkg-plist
#	libsbml/pkg-descr
#	libsbml/distinfo
#	libsbml/Makefile
#	libsbml/files
#	libsbml/files/patch-Makefile.in
#
echo c - libsbml
mkdir -p libsbml > /dev/null 2>&1
echo x - libsbml/pkg-plist
sed 's/^X//' >libsbml/pkg-plist << 'ffbe304f41470d253133f80de529c14d'
Xlibdata/pkgconfig/libsbml.pc
Xinclude/sbml/Compartment.h
Xinclude/sbml/CompartmentType.h
Xinclude/sbml/Constraint.h
Xinclude/sbml/Delay.h
Xinclude/sbml/Event.h
Xinclude/sbml/EventAssignment.h
Xinclude/sbml/FunctionDefinition.h
Xinclude/sbml/InitialAssignment.h
Xinclude/sbml/KineticLaw.h
Xinclude/sbml/ListOf.h
Xinclude/sbml/Model.h
Xinclude/sbml/Parameter.h
Xinclude/sbml/Reaction.h
Xinclude/sbml/Rule.h
Xinclude/sbml/SBMLDocument.h
Xinclude/sbml/SBMLError.h
Xinclude/sbml/SBMLErrorLog.h
Xinclude/sbml/SBMLErrorTable.h
Xinclude/sbml/SBMLReader.h
Xinclude/sbml/SBMLTypeCodes.h
Xinclude/sbml/SBMLTypes.h
Xinclude/sbml/SBMLVisitor.h
Xinclude/sbml/SBMLWriter.h
Xinclude/sbml/SBO.h
Xinclude/sbml/SBase.h
Xinclude/sbml/Species.h
Xinclude/sbml/SpeciesReference.h
Xinclude/sbml/SpeciesType.h
Xinclude/sbml/StoichiometryMath.h
Xinclude/sbml/Trigger.h
Xinclude/sbml/Unit.h
Xinclude/sbml/UnitDefinition.h
Xinclude/sbml/UnitKind.h
Xinclude/sbml/annotation/CVTerm.h
Xinclude/sbml/annotation/ModelHistory.h
Xinclude/sbml/annotation/RDFAnnotation.h
Xinclude/sbml/common/common.h
Xinclude/sbml/common/extern.h
Xinclude/sbml/common/libsbml-config-unix.h
Xinclude/sbml/common/libsbml-config-win.h
Xinclude/sbml/common/libsbml-config.h
Xinclude/sbml/common/libsbml-version.h
Xinclude/sbml/common/sbmlfwd.h
Xinclude/sbml/compress/CompressCommon.h
Xinclude/sbml/compress/InputDecompressor.h
Xinclude/sbml/compress/OutputCompressor.h
Xinclude/sbml/compress/bzfstream.h
Xinclude/sbml/compress/crypt.h
Xinclude/sbml/compress/ioapi.h
Xinclude/sbml/compress/iowin32.h
Xinclude/sbml/compress/unzip.h
Xinclude/sbml/compress/zfstream.h
Xinclude/sbml/compress/zip.h
Xinclude/sbml/compress/zipfstream.h
Xinclude/sbml/math/ASTNode.h
Xinclude/sbml/math/FormulaFormatter.h
Xinclude/sbml/math/FormulaParser.h
Xinclude/sbml/math/FormulaTokenizer.h
Xinclude/sbml/math/MathML.h
Xinclude/sbml/units/FormulaUnitsData.h
Xinclude/sbml/units/UnitFormulaFormatter.h
Xinclude/sbml/units/UnitKindList.h
Xinclude/sbml/util/List.h
Xinclude/sbml/util/Stack.h
Xinclude/sbml/util/StringBuffer.h
Xinclude/sbml/util/memory.h
Xinclude/sbml/util/util.h
Xinclude/sbml/validator/ConsistencyValidator.h
Xinclude/sbml/validator/ConstraintMacros.h
Xinclude/sbml/validator/IdentifierConsistencyValidator.h
Xinclude/sbml/validator/InternalConsistencyValidator.h
Xinclude/sbml/validator/L1CompatibilityValidator.h
Xinclude/sbml/validator/L2v1CompatibilityValidator.h
Xinclude/sbml/validator/L2v2CompatibilityValidator.h
Xinclude/sbml/validator/L2v3CompatibilityValidator.h
Xinclude/sbml/validator/L2v4CompatibilityValidator.h
Xinclude/sbml/validator/MathMLConsistencyValidator.h
Xinclude/sbml/validator/ModelingPracticeValidator.h
Xinclude/sbml/validator/OverdeterminedValidator.h
Xinclude/sbml/validator/SBOConsistencyValidator.h
Xinclude/sbml/validator/UnitConsistencyValidator.h
Xinclude/sbml/validator/VConstraint.h
Xinclude/sbml/validator/Validator.h
Xinclude/sbml/validator/constraints/IdBase.h
Xinclude/sbml/validator/constraints/IdList.h
Xinclude/sbml/validator/constraints/MathMLBase.h
Xinclude/sbml/validator/constraints/OverDeterminedCheck.h
Xinclude/sbml/validator/constraints/UniqueIdBase.h
Xinclude/sbml/validator/constraints/UniqueMetaId.h
Xinclude/sbml/validator/constraints/UnitsBase.h
Xinclude/sbml/xml/LibXMLAttributes.h
Xinclude/sbml/xml/LibXMLHandler.h
Xinclude/sbml/xml/LibXMLNamespaces.h
Xinclude/sbml/xml/LibXMLParser.h
Xinclude/sbml/xml/LibXMLTranscode.h
Xinclude/sbml/xml/XMLAttributes.h
Xinclude/sbml/xml/XMLBuffer.h
Xinclude/sbml/xml/XMLError.h
Xinclude/sbml/xml/XMLErrorLog.h
Xinclude/sbml/xml/XMLExtern.h
Xinclude/sbml/xml/XMLFileBuffer.h
Xinclude/sbml/xml/XMLHandler.h
Xinclude/sbml/xml/XMLInputStream.h
Xinclude/sbml/xml/XMLMemoryBuffer.h
Xinclude/sbml/xml/XMLNamespaces.h
Xinclude/sbml/xml/XMLNode.h
Xinclude/sbml/xml/XMLOutputStream.h
Xinclude/sbml/xml/XMLParser.h
Xinclude/sbml/xml/XMLToken.h
Xinclude/sbml/xml/XMLTokenizer.h
Xinclude/sbml/xml/XMLTriple.h
Xlib/libsbml.3.3.2.so
Xlib/libsbml.so
Xlib/libsbml.a
X@dirrm include/sbml/annotation
X@dirrm include/sbml/common
X@dirrm include/sbml/compress
X@dirrm include/sbml/math
X@dirrm include/sbml/units
X@dirrm include/sbml/util
X@dirrm include/sbml/validator/constraints
X@dirrm include/sbml/validator
X@dirrm include/sbml/xml
X@dirrm include/sbml/
X%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/_libsbml.so
X%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/libsbml.py
X%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/libsbml.pyc
X%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml.pth
X%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/%%SBML_EGGINFO%%
X%%WITH_PYTHON%%@dirrm %%PYTHON_SITELIBDIR%%/libsbml
X%%WITH_RUBY%%%%RUBY_SITEARCHLIBDIR%%/libSBML.so
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/README.txt
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/FormulaGraphvizFormatter.h
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/Makefile
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/Makefile.in
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/convertSBML.c
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/drawMath.c
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/echoSBML.c
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/evaluateMath.c
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/printMath.c
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/printSBML.c
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/readSBML.c
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/translateMath.c
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/util.c
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/util.h
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/validateSBML.c
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/Makefile
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/Makefile.in
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addCVTerms.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addModelHistory.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/appendAnnotation.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/convertSBML.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/createExampleSBML.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/echoSBML.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printAnnotation.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printMath.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printNotes.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printSBML.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printUnits.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/readSBML.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/translateMath.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/unsetAnnotation.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/unsetNotes.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/util.c
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/util.h
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/validateSBML.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/Makefile
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/Makefile.in
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/echoSBML.cs
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/validateSBML.cs
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/Makefile
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/Makefile.in
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/README.txt
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/addCVTerms.java
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/addModelHistory.java
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/appendAnnotation.java
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/convertSBML.java
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/echoSBML.java
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/evaluateMath.java
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/printAnnotation.java
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/printMath.java
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/printNotes.java
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/printSBML.java
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/printUnits.java
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/readSBML.java
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/translateMath.java
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/unsetAnnotation.java
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/unsetNotes.java
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/validateSBML.java
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/Makefile.in
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example1.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example1.java
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example1.py
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example2.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example3.cpp
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/layout2svg.xsl
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/convertSBML.pl
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/evaluateMath.pl
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/extractReactionInfo.pl
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/extractReactions.pl
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/printMath.pl
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/printSBML.pl
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/readSBML.pl
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/translateMath.pl
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/validateSBML.pl
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/echoSBML.py
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/validateSBML.py
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/convertSBML.rb
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/echoSBML.rb
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/printMath.rb
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/validateSBML.rb
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/README.txt
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/README.txt
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/algebraicrules.xml
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/assignmentrules.xml
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/boundarycondition.xml
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/delay.xml
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/dimerization.xml
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/enzymekinetics.xml
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/events.xml
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/functiondef.xml
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/multicomp.xml
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/overdetermined.xml
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/twodimensional.xml
X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/units.xml
X%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c
X%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c++
X%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/csharp
X%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/java
X%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/layout
X%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/perl
X%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/python
X%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/ruby
X%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models/from-spec/level-2
X%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models/from-spec
X%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models
X%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
ffbe304f41470d253133f80de529c14d
echo x - libsbml/pkg-descr
sed 's/^X//' >libsbml/pkg-descr << 'cc633700decba3500a8d9668a6e3671c'
XLibSBML is an open-source programming library to help you read, write,
Xmanipulate, translate, and validate SBML files and data streams. It is
Xnot an application itself (though it does come with example programs),
Xbut rather a library you can embed in your own applications.
X
XLibSBML understands all Levels and Versions of SBML, as well as the
XSBML Layout proposal by Gauges, Rost, Sahle and Wegner. It's written in
XISO C and C++ but can be used from all the languages listed in the
Xright-hand box.
X
XWWW: http://www.sbml.org/
cc633700decba3500a8d9668a6e3671c
echo x - libsbml/distinfo
sed 's/^X//' >libsbml/distinfo << 'af9028e3115de59f3b8db156d13c1a9d'
XMD5 (libsbml-3.3.2-src.zip) = f8b3ff297848f8cf0918c065f8a65133
XSHA256 (libsbml-3.3.2-src.zip) = 5ebd8a57679fda954032e44111fdbcb8dc8598037354962d82a1742b621505d4
XSIZE (libsbml-3.3.2-src.zip) = 7076694
af9028e3115de59f3b8db156d13c1a9d
echo x - libsbml/Makefile
sed 's/^X//' >libsbml/Makefile << '8e735ae2a3fcd31385ef1ac79bfbff57'
X# New ports collection makefile for:	libsbml
X# Date created:			29 May, 2009
X# Whom:				Wen Heping <wenheping@gmail.com>
X#
X# $FreeBSD$
X#
X
XPORTNAME=	libsbml
XPORTVERSION=	3.3.2
XCATEGORIES=	biology devel
XMASTER_SITES=	SF
XMASTER_SITE_SUBDIR=	sbml
XDISTNAME=	${PORTNAME}-${PORTVERSION}-src
X
XMAINTAINER=	wenheping@gmail.com
XCOMMENT=	An API Library for Working with SBML File
X
XLIB_DEPENDS=	xml2.5:${PORTSDIR}/textproc/libxml2
X
XOPTIONS=	PYTHON "Support for Python" off \
X		RUBY "Support for Ruby" off
X
XUSE_GMAKE=	yes
XUSE_ZIP=	yes
XGNU_CONFIGURE=	yes
XUSE_LDCONFIG=	yes
XWRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}
X
X.include <bsd.port.pre.mk>
X.if defined(WITH_PYTHON)
X.include "../../Mk/bsd.python.mk"
XBUILD_DEPENDS+=		${LOCALBASE}/bin/python:${PORTSDIR}/lang/python
XCONFIGURE_ARGS+=	--with-python
XPLIST_SUB+=		WITH_PYTHON="" \
X			SBML_EGGINFO=${PORTNAME}-${PORTVERSION}-${PYTHON_VERSION:S/thon//}.egg-info
X.else
XPLIST_SUB+=		WITH_PYTHON="@comment "
X.endif
X
X.if defined(WITH_RUBY)
X.include "../../Mk/bsd.ruby.mk"
XBUILD_DEPENDS+=		${LOCALBASE}/bin/ruby:${PORTSDIR}/lang/ruby18
XCONFIGURE_ARGS+=	--with-ruby
XPLIST_SUB+=		WITH_RUBY=""
X.else
XPLIST_SUB+=		WITH_RUBY="@comment "
X.endif
X
Xpost-install:
X.if !defined(NOPORTEXAMPLES)
X	${MKDIR} ${EXAMPLESDIR}
X	cd ${WRKSRC}/examples \
X		&& ${FIND} . -type d -exec ${MKDIR} ${EXAMPLESDIR}/\{} \; \
X		&& ${FIND} . -type f -exec ${INSTALL_DATA} \{} ${EXAMPLESDIR}/\{} \;
X.endif
X.include <bsd.port.post.mk>
8e735ae2a3fcd31385ef1ac79bfbff57
echo c - libsbml/files
mkdir -p libsbml/files > /dev/null 2>&1
echo x - libsbml/files/patch-Makefile.in
sed 's/^X//' >libsbml/files/patch-Makefile.in << 'd0c1c9def7b9bfdd641ba59b50e94134'
X--- Makefile.in.orig	2009-05-27 23:09:33.000000000 +0800
X+++ Makefile.in	2009-05-27 23:33:47.000000000 +0800
X@@ -413,7 +413,7 @@
X endif
X 
X install-pc: libsbml.pc
X-	$(INSTALL_SH) libsbml.pc -m 0644 "$(DESTDIR)$(LIBDIR)/pkgconfig/libsbml.pc"
X+	$(INSTALL_SH) libsbml.pc -m 0644 "/usr/local/libdata/pkgconfig/libsbml.pc"
X 
X install-la: libsbml.la
X ifeq "$(HOST_TYPE)" "cygwin"
X@@ -449,17 +449,17 @@
X 	$(warning $(uninstall-warning-msg))
X 
X uninstall-libsbml-pc:
X-	@target="$(DESTDIR)$(LIBDIR)/pkgconfig/libsbml.pc"; \
X+	@target="/usr/local/libdata/pkgconfig/libsbml.pc"; \
X 	if test -f $$target ; then \
X 	  echo rm $$target; \
X 	  rm $$target; \
X 	fi; \
X-	if test -d "$(DESTDIR)$(LIBDIR)/pkgconfig"; then \
X+	if test -d "/usr/local/libdata/pkgconfig"; then \
X 	  if test -n "`find $(DESTDIR)$(LIBDIR) -maxdepth 0 -empty`"; then \
X-	    echo rmdir "$(DESTDIR)$(LIBDIR)/pkgconfig"; \
X-	    rmdir "$(DESTDIR)$(LIBDIR)/pkgconfig"; \
X+	    echo rmdir "/usr/local/libdata/pkgconfig"; \
X+	    rmdir "/usr/local/libdata/pkgconfig"; \
X 	  else \
X-	    echo "Directory $(DESTDIR)$(LIBDIR)/pkgconfig not empty; leaving it alone"; \
X+	    echo "Directory /usr/local/libdata/pkgconfig not empty; leaving it alone"; \
X 	  fi; \
X 	fi;
X 
d0c1c9def7b9bfdd641ba59b50e94134
exit