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(-)embassy/Makefile (-15 / +19 lines)
Lines 7-13 Link Here
7 
#
 7 
#
8 

          8
          

        

        

          9
          
PORTNAME=	embassy

          9
          
PORTNAME=	embassy

        

          
            

              10
              
PORTVERSION=	5.0.0


              10
              
PORTVERSION=	6.0.0

            

        

          11
          
CATEGORIES=	biology

          11
          
CATEGORIES=	biology

        

        

          12
          
MASTER_SITES=	ftp://emboss.open-bio.org/pub/EMBOSS/ \

          12
          
MASTER_SITES=	ftp://emboss.open-bio.org/pub/EMBOSS/ \

        

        

          13
          
		ftp://ftp.ebi.ac.uk/pub/software/unix/EMBOSS/

          13
          
		ftp://ftp.ebi.ac.uk/pub/software/unix/EMBOSS/

        

  

    
      
            Lines 16-24
          
      
      
        Link Here
      
    
  

        

          16
          
MAINTAINER=	fernan@iib.unsam.edu.ar

          16
          
MAINTAINER=	fernan@iib.unsam.edu.ar

        

        

          17
          
COMMENT=	A collection of contributed EMBOSS applications

          17
          
COMMENT=	A collection of contributed EMBOSS applications

        

        

          18
          

          18
          

        

          
            

              19
              
LIB_DEPENDS=	nucleus.5:${PORTSDIR}/biology/emboss


              19
              
LIB_DEPENDS=	nucleus.6:${PORTSDIR}/biology/emboss

            

            

              20
              


              
              
            

            

              21
              
BROKEN=		does not compile


            

        

          22
          

          20
          

        

        

          23
          
PREFIX?=	${LOCALBASE}/emboss

          21
          
PREFIX?=	${LOCALBASE}/emboss

        

        

          24
          
NO_MTREE=	yes

          22
          
NO_MTREE=	yes

        

  

    
      
            Lines 38-71
          
      
      
        Link Here
      
    
  

        

          38
          
		EMNU		"EMBOSS simple menu" on \

          36
          
		EMNU		"EMBOSS simple menu" on \

        

        

          39
          
		ESIM4		"Align cDNA/EST to genome" on \

          37
          
		ESIM4		"Align cDNA/EST to genome" on \

        

        

          40
          
		HMMER		"HMM alignment and searches" on \

          38
          
		HMMER		"HMM alignment and searches" on \

        

          
            

              41
              
		MEME		"Motif detection" on \


              39
              
		MEMENEW		"Motif detection" on \

            

        

          42
          
		MSE		"A multiple sequence screen editor" on \

          40
          
		MSE		"A multiple sequence screen editor" on \

        

        

          43
          
		MYEMBOSS	"Examples for developers of EMBOSS apps" on \

          41
          
		MYEMBOSS	"Examples for developers of EMBOSS apps" on \

        

          
            

              44
              
		PHYLIP		"Phylogeny inference" on \


              42
              
		PHYLIPNEW	"Phylogeny inference" on \

            

        

          45
          
		TOPO		"Transmembrane display" on \

          43
          
		TOPO		"Transmembrane display" on \

        

          
            

              46
              
		VIENNA		"RNA folding" on


              44
              
		VIENNA		"RNA folding" on \

            

            

              
              

              45
              
		MIRA		"Whole Genome shotgun and EST assembler" on \

            

            


              46
              
		IPRSCAN		"InterPro scan" on \

            

            


              47
              
		CBSTOOLS	"CBS Tools" on

            

        

          47
          

          48
          

        

          
            

              48
              
CONFIGURE_ENV+=	CPPFLAGS="-I${PREFIX}/include -I${LOCALBASE}/include" \


              49
              
CONFIGURE_ENV+=	CPPFLAGS="-I${PREFIX}/include -I${LOCALBASE}/include -I${LOCALBASE}/emboss/include" \

            

            

              49
              
		LDFLAGS="-L${PREFIX}/lib -L${LOCALBASE}/lib"


              50
              
		LDFLAGS="-L${PREFIX}/lib -L${LOCALBASE}/lib -L${LOCALBASE}/emboss/lib"

            

        

          50
          

          51
          

        

        

          51
          
EMBASSY_WRKDIR=		${WRKSRC}/EMBASSY

          52
          
EMBASSY_WRKDIR=		${WRKSRC}/EMBASSY

        

        

          52
          
DOMAINATRIX_VERSION=	0.1.0

          53
          
DOMAINATRIX_VERSION=	0.1.0

        

        

          53
          
EMNU_VERSION=		1.05

          54
          
EMNU_VERSION=		1.05

        

        

          54
          
ESIM4_VERSION=		1.0.0

          55
          
ESIM4_VERSION=		1.0.0

        

        

          55
          
HMMER_VERSION=		2.3.2

          56
          
HMMER_VERSION=		2.3.2

        

          
            

              56
              
MEME_VERSION=		0.1.0


              57
              
MEMENEW_VERSION=	0.1.0

            

        

          57
          
MSE_VERSION=		1.0.0

          58
          
MSE_VERSION=		1.0.0

        

        

          58
          
TOPO_VERSION=		1.0.0

          59
          
TOPO_VERSION=		1.0.0

        

          
            

              59
              
PHYLIP_VERSION=		3.6b


              60
              
PHYLIPNEW_VERSION=	3.67

            

        

          60
          
DOMALIGN_VERSION=	0.1.0

          61
          
DOMALIGN_VERSION=	0.1.0

        

        

          61
          
DOMSEARCH_VERSION=	0.1.0

          62
          
DOMSEARCH_VERSION=	0.1.0

        

        

          62
          
SIGNATURE_VERSION=	0.1.0

          63
          
SIGNATURE_VERSION=	0.1.0

        

        

          63
          
STRUCTURE_VERSION=	0.1.0

          64
          
STRUCTURE_VERSION=	0.1.0

        

          
            

              64
              
MYEMBOSS_VERSION=	3.0.0


              65
              
MYEMBOSS_VERSION=	6.0.0

            

            

              65
              
VIENNA_VERSION=		1.6


              66
              
VIENNA_VERSION=		1.7.2

            

            

              66
              
EMBASSY_APPS=		DOMAINATRIX EMNU ESIM4 HMMER MEME MSE PHYLIP \


              67
              
MIRA_VERSION=		2.8.2

            

            

              
              

              68
              
IPRSCAN_VERSION=	4.3.1

            

            


              69
              
CBSTOOLS_VERSION=	1.0.0

            

            


              70
              
EMBASSY_APPS=		DOMAINATRIX EMNU ESIM4 HMMER MEMENEW MSE PHYLIPNEW \

            

        

          67
          
			TOPO DOMALIGN DOMSEARCH SIGNATURE STRUCTURE MYEMBOSS \

          71
          
			TOPO DOMALIGN DOMSEARCH SIGNATURE STRUCTURE MYEMBOSS \

        

          
            

              68
              
			VIENNA


              72
              
			VIENNA MIRA IPRSCAN CBSTOOLS

            

        

          69
          

          73
          

        

        

          70
          
.include <bsd.port.pre.mk>

          74
          
.include <bsd.port.pre.mk>

        

        

          71
          

          75
          

        



(-)embassy/distinfo
      (-42 / +51 lines)




  

    
      
            Lines 1-42
          
      
      
        Link Here
      
    
  

          
            

              1
              
MD5 (emboss/DOMAINATRIX-0.1.0.tar.gz) = 0be3c59550e1e22924ea2540b11af275


              1
              
MD5 (emboss/DOMAINATRIX-0.1.0.tar.gz) = 0f5211a2ee754b4f32332beaf660964c

            

            

              2
              
SHA256 (emboss/DOMAINATRIX-0.1.0.tar.gz) = b81fde3ab329ab75482b341568ef2965d99803765438f3825688a0d2abc05ca6


              2
              
SHA256 (emboss/DOMAINATRIX-0.1.0.tar.gz) = 7596e76b79f19d77e27b8ea8a75a3e1ba4c806aa548cb9675f23e2bb434a42b1

            

            

              3
              
SIZE (emboss/DOMAINATRIX-0.1.0.tar.gz) = 420051


              3
              
SIZE (emboss/DOMAINATRIX-0.1.0.tar.gz) = 420983

            

            

              4
              
MD5 (emboss/EMNU-1.05.tar.gz) = 64d8b9c2cd1a566aebb3355eb684bd35


              4
              
MD5 (emboss/EMNU-1.05.tar.gz) = df6c267bb12e3ecd19bffe5f678bfdb3

            

            

              5
              
SHA256 (emboss/EMNU-1.05.tar.gz) = 56a55f336b0083ecfd2fd2dae0613f46e802eacb3214c16fc1966e6516795b95


              5
              
SHA256 (emboss/EMNU-1.05.tar.gz) = 2f58621cc7151f813ce608dcd5b3505fc84af882c778fe28167508d6851dc333

            

            

              6
              
SIZE (emboss/EMNU-1.05.tar.gz) = 389665


              6
              
SIZE (emboss/EMNU-1.05.tar.gz) = 390229

            

            

              7
              
MD5 (emboss/ESIM4-1.0.0.tar.gz) = ee65d0da0f2d75959f370b13f2218c1c


              7
              
MD5 (emboss/ESIM4-1.0.0.tar.gz) = 36d9e1dc37004ff4189f583d8d3b037b

            

            

              8
              
SHA256 (emboss/ESIM4-1.0.0.tar.gz) = eee1cc8fef40e19fab74b16f1c1cb0883a49561eb9fdc2075f428085c6722bda


              8
              
SHA256 (emboss/ESIM4-1.0.0.tar.gz) = 219b3541e2a67d31fd62140c2c9c2b41e2d3d814dec6aaf691f764e337917577

            

            

              9
              
SIZE (emboss/ESIM4-1.0.0.tar.gz) = 431329


              9
              
SIZE (emboss/ESIM4-1.0.0.tar.gz) = 431898

            

            

              10
              
MD5 (emboss/HMMER-2.3.2.tar.gz) = 3aa5707db81854f2674bf27aaeb1362e


              10
              
MD5 (emboss/HMMER-2.3.2.tar.gz) = edc18f5515f1fd712b7d2accf58a9a2e

            

            

              11
              
SHA256 (emboss/HMMER-2.3.2.tar.gz) = 31bbcca1f71b82170a65c4438f9cb9f1dfe3d4e066037a852060b010e3e39b5b


              11
              
SHA256 (emboss/HMMER-2.3.2.tar.gz) = 9b27f2b7a9059b017e3bd3d31de08f6fbf7d49c3e025d73abd83ff0567732258

            

            

              12
              
SIZE (emboss/HMMER-2.3.2.tar.gz) = 565223


              12
              
SIZE (emboss/HMMER-2.3.2.tar.gz) = 565686

            

            

              13
              
MD5 (emboss/MEME-0.1.0.tar.gz) = d304f3b8a8e15af4dfa7b295655d80ec


              13
              
MD5 (emboss/MEMENEW-0.1.0.tar.gz) = 72f4a3b8544aa1603301b7b83692a133

            

            

              14
              
SHA256 (emboss/MEME-0.1.0.tar.gz) = ed4c02010af036515203661c28776b5e773e77eccad59990b7ac1410399d45ef


              14
              
SHA256 (emboss/MEMENEW-0.1.0.tar.gz) = 5411d1445feb1b5e460e598a9d7e670a4357fe7aa350d96531b1aa9c79fab636

            

            

              15
              
SIZE (emboss/MEME-0.1.0.tar.gz) = 448413


              15
              
SIZE (emboss/MEMENEW-0.1.0.tar.gz) = 450102

            

            

              16
              
MD5 (emboss/MSE-1.0.0.tar.gz) = 3978a06e3651104f622a5834523c45de


              16
              
MD5 (emboss/MSE-1.0.0.tar.gz) = 3122000020565077a421a53cf114127a

            

            

              17
              
SHA256 (emboss/MSE-1.0.0.tar.gz) = e35560310ece8bb2dec7eeb88e99f39f313bf7366afc445e3b074b687e7f36b2


              17
              
SHA256 (emboss/MSE-1.0.0.tar.gz) = 9e3688ff3514b7ea6cf104fbd2a2e611fe726fb7ac4bebab6f3c103f05c08d90

            

            

              18
              
SIZE (emboss/MSE-1.0.0.tar.gz) = 445013


              18
              
SIZE (emboss/MSE-1.0.0.tar.gz) = 445562

            

            

              19
              
MD5 (emboss/PHYLIP-3.6b.tar.gz) = 760a90bea49872aba95fd7dd2b67570c


              19
              
MD5 (emboss/PHYLIPNEW-3.67.tar.gz) = cbd539fb39673cc362d827fa731f03f3

            

            

              20
              
SHA256 (emboss/PHYLIP-3.6b.tar.gz) = c2397937f4b827844192a33b31f13271a3560c81045543d912a9c28eb6ad894f


              20
              
SHA256 (emboss/PHYLIPNEW-3.67.tar.gz) = efbfdbff0109c62823caf13f20cb6462f54371d55899fcbbe29240e503584945

            

            

              21
              
SIZE (emboss/PHYLIP-3.6b.tar.gz) = 1594433


              21
              
SIZE (emboss/PHYLIPNEW-3.67.tar.gz) = 1624802

            

            

              22
              
MD5 (emboss/TOPO-1.0.0.tar.gz) = d45602a1b1f22da50a775c41df5fe672


              22
              
MD5 (emboss/TOPO-1.0.0.tar.gz) = 03ea6cf067db1f673ec27195076b0e4a

            

            

              23
              
SHA256 (emboss/TOPO-1.0.0.tar.gz) = ed1921e92d1bbd9fcc16ab36f2fcbafca9e60cc0d4b4fd1da77660ffd3e7b2f2


              23
              
SHA256 (emboss/TOPO-1.0.0.tar.gz) = a7fd297c5e27becedd4aafd272123a176581c68b90de872fb3cb46356333cc16

            

            

              24
              
SIZE (emboss/TOPO-1.0.0.tar.gz) = 379381


              24
              
SIZE (emboss/TOPO-1.0.0.tar.gz) = 379929

            

            

              25
              
MD5 (emboss/DOMALIGN-0.1.0.tar.gz) = e5d004c1223116abaebb6657ae4a80fa


              25
              
MD5 (emboss/DOMALIGN-0.1.0.tar.gz) = 58dff4731762bef6248b163bf2d160bd

            

            

              26
              
SHA256 (emboss/DOMALIGN-0.1.0.tar.gz) = aa61cfc6da3cc478dd7f476537cdc6d966b00b90e2adedc709eb75e39e840c5c


              26
              
SHA256 (emboss/DOMALIGN-0.1.0.tar.gz) = c448dc461b36e299c6338f25c102de2388cc33515eae8fd1dc7097920efa409a

            

            

              27
              
SIZE (emboss/DOMALIGN-0.1.0.tar.gz) = 460530


              27
              
SIZE (emboss/DOMALIGN-0.1.0.tar.gz) = 462156

            

            

              28
              
MD5 (emboss/DOMSEARCH-0.1.0.tar.gz) = 778ab15bce09a6440fc6859b3a27157d


              28
              
MD5 (emboss/DOMSEARCH-0.1.0.tar.gz) = e862f6b4f02f4640f9729862efab5a0a

            

            

              29
              
SHA256 (emboss/DOMSEARCH-0.1.0.tar.gz) = 23e069161ec56df5eab5fc491ca3493c056cfee42f2e05f1b5ef258498792a87


              29
              
SHA256 (emboss/DOMSEARCH-0.1.0.tar.gz) = fb34c1b2f668f89abe6912fe75e9828c53802820753aa8a1b952f37894939c95

            

            

              30
              
SIZE (emboss/DOMSEARCH-0.1.0.tar.gz) = 469776


              30
              
SIZE (emboss/DOMSEARCH-0.1.0.tar.gz) = 470537

            

            

              31
              
MD5 (emboss/SIGNATURE-0.1.0.tar.gz) = 26deae308cc5aac3dee5dd03df2ae9e8


              31
              
MD5 (emboss/SIGNATURE-0.1.0.tar.gz) = cc7c707c41156b6681ddca7b76ff009d

            

            

              32
              
SHA256 (emboss/SIGNATURE-0.1.0.tar.gz) = 9b0529befdbe5d56b3370cfffe0a4b4cc523f350b50ddd4a61dd24776a1770e8


              32
              
SHA256 (emboss/SIGNATURE-0.1.0.tar.gz) = 0966e165516448e214275e3cafcca91b9bb83d96264d2bf205aace1380138d2f

            

            

              33
              
SIZE (emboss/SIGNATURE-0.1.0.tar.gz) = 573992


              33
              
SIZE (emboss/SIGNATURE-0.1.0.tar.gz) = 574940

            

            

              34
              
MD5 (emboss/STRUCTURE-0.1.0.tar.gz) = 6736b4741b15d4cba488a5422fcfaee1


              34
              
MD5 (emboss/STRUCTURE-0.1.0.tar.gz) = 7df40530fd15f441c531f5dbd5c10fff

            

            

              35
              
SHA256 (emboss/STRUCTURE-0.1.0.tar.gz) = 3ed8ea5373232cd80302ff3b8727838b4de2f6b39aa263ab9530bbbe71d730c1


              35
              
SHA256 (emboss/STRUCTURE-0.1.0.tar.gz) = cd8b17947fe764e830bd14887deb85a5f196f490d25b9c6408aaca0c1baecd23

            

            

              36
              
SIZE (emboss/STRUCTURE-0.1.0.tar.gz) = 530874


              36
              
SIZE (emboss/STRUCTURE-0.1.0.tar.gz) = 532035

            

            

              37
              
MD5 (emboss/MYEMBOSS-3.0.0.tar.gz) = 9c3d6ea80166f62cd6ee63dfcb7e57a4


              37
              
MD5 (emboss/MYEMBOSS-6.0.0.tar.gz) = 5f51d49558131a518ac40220dd7fa0c3

            

            

              38
              
SHA256 (emboss/MYEMBOSS-3.0.0.tar.gz) = dc21b1772c2d76ed1c717eba6f8443b86cdf2e3cbcf71e056cdb9723138e4440


              38
              
SHA256 (emboss/MYEMBOSS-6.0.0.tar.gz) = 7f24d800044b0957006c8550de74ca621301f6de1c724980fe90e8a6093b6048

            

            

              39
              
SIZE (emboss/MYEMBOSS-3.0.0.tar.gz) = 354179


              39
              
SIZE (emboss/MYEMBOSS-6.0.0.tar.gz) = 343305

            

            

              40
              
MD5 (emboss/VIENNA-1.6.tar.gz) = 282ed7ac9c1741160fcb1e8d48539311


              40
              
MD5 (emboss/VIENNA-1.7.2.tar.gz) = f6ec2092de41dafdb6cf302dd5412498

            

            

              41
              
SHA256 (emboss/VIENNA-1.6.tar.gz) = 04c4a57486e23c2cc8ef396d9012c396519b2ab1b13b2500199e6457a34cfa58


              41
              
SHA256 (emboss/VIENNA-1.7.2.tar.gz) = 7bed50f9992aec250f974f5c5fd9a42d49c24f05e0e9fac88bb94b2d76be25db

            

            

              42
              
SIZE (emboss/VIENNA-1.6.tar.gz) = 635638


              42
              
SIZE (emboss/VIENNA-1.7.2.tar.gz) = 682200

            

            

              
              

              43
              
MD5 (emboss/MIRA-2.8.2.tar.gz) = c74a63e10ce983c39389593693c851e7

            

            


              44
              
SHA256 (emboss/MIRA-2.8.2.tar.gz) = 33d756bd50fe26c04aff862f34230feaad831cbe538096e4d8e5c8e0b6784fe1

            

            


              45
              
SIZE (emboss/MIRA-2.8.2.tar.gz) = 365566

            

            


              46
              
MD5 (emboss/IPRSCAN-4.3.1.tar.gz) = 8164a9b8392d29ba3bc723c1bc5da2ff

            

            


              47
              
SHA256 (emboss/IPRSCAN-4.3.1.tar.gz) = df0bdd33ea6f279ed018f4a22e686cc14ff0e9f65342177b3b9dbb2951c3636a

            

            


              48
              
SIZE (emboss/IPRSCAN-4.3.1.tar.gz) = 339939

            

            


              49
              
MD5 (emboss/CBSTOOLS-1.0.0.tar.gz) = 9352c924a8c86233fbf6dc80c58cc481

            

            


              50
              
SHA256 (emboss/CBSTOOLS-1.0.0.tar.gz) = b61b6c19d18dd3a35eef248feb92ee68bcee0e9fc99af5185deee04a17fa3693

            

            


              51
              
SIZE (emboss/CBSTOOLS-1.0.0.tar.gz) = 343812

            



(-)embassy/pkg-plist
      (-349 / +368 lines)




  

    
      
            Lines 1-10
          
      
      
        Link Here
      
    
  

            

              1
              
%%PLIST_DOMAINATRIX%%bin/cathparse

              
              
            

            

              2
              
%%PLIST_DOMAINATRIX%%bin/domainnr

            

            

              3
              
%%PLIST_DOMAINATRIX%%bin/domainreso

            

            

              4
              
%%PLIST_DOMAINATRIX%%bin/domainseqs

            

            

              5
              
%%PLIST_DOMAINATRIX%%bin/domainsse

            

            

              6
              
%%PLIST_DOMAINATRIX%%bin/scopparse

            

            

              7
              
%%PLIST_DOMAINATRIX%%bin/ssematch

            

        

          8
          
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/cathparse.acd

          1
          
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/cathparse.acd

        

        

          9
          
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainnr.acd

          2
          
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainnr.acd

        

        

          10
          
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainreso.acd

          3
          
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainreso.acd

        

  

    
      
            Lines 12-17
          
      
      
        Link Here
      
    
  

        

          12
          
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainsse.acd

          5
          
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainsse.acd

        

        

          13
          
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/scopparse.acd

          6
          
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/scopparse.acd

        

        

          14
          
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/ssematch.acd

          7
          
%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/ssematch.acd

        

            

              
              
              8
              
%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/cathparse.txt

            

            

              9
              
%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/domainnr.txt

            

            

              10
              
%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/domainreso.txt

            

            

              11
              
%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/domainseqs.txt

            

            

              12
              
%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/domainsse.txt

            

            

              13
              
%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/scopparse.txt

            

            

              14
              
%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/ssematch.txt

            

        

          15
          
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%%PLIST_HMMER%%share/EMBOSS/acd/ehmmsearch.acd

            

            


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%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmalign.txt

            

            


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%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmcalibrate.txt

            

            


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%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmconvert.txt

            

            


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%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmemit.txt

            

            


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%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmfetch.txt

            

            


              166
              
%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmindex.txt

            

            


              167
              
%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmpfam.txt

            

            


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%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmsearch.txt

            

            


              169
              
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/index.html

            

            


              170
              
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmalign.html

            

            


              171
              
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmbuild.html

            

            


              172
              
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmcalibrate.html

            

            


              173
              
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmconvert.html

            

            


              174
              
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmemit.html

            

            


              175
              
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmfetch.html

            

            


              176
              
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmindex.html

            

            


              177
              
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmpfam.html

            

            


              178
              
%%PLIST_HMMER%%share/EMBOSS/doc/html/embassy/hmmernew/ehmmsearch.html

            

            


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%%PLIST_HMMER%%@dirrm share/EMBOSS/doc/html/embassy/hmmernew

            

            


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%%PLIST_HMMER%%bin/ehmmcalibrate

            

            


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%%PLIST_HMMER%%bin/ehmmconvert

            

            


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%%PLIST_HMMER%%bin/ehmmemit

            

            


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%%PLIST_HMMER%%bin/ehmmfetch

            

            


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%%PLIST_HMMER%%bin/ehmmindex

            

            


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%%PLIST_HMMER%%bin/ehmmbuild

            

            


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%%PLIST_HMMER%%bin/ehmmalign

            

            


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%%PLIST_HMMER%%bin/ehmmpfam

            

            


              188
              
%%PLIST_HMMER%%bin/ehmmsearch

            

            


              189
              
%%PLIST_MEMENEW%%share/EMBOSS/acd/emast.acd

            

            


              190
              
%%PLIST_MEMENEW%%share/EMBOSS/acd/ememe.acd

            

            


              191
              
%%PLIST_MEMENEW%%share/EMBOSS/doc/programs/text/emast.txt

            

            


              192
              
%%PLIST_MEMENEW%%share/EMBOSS/doc/programs/text/ememe.txt

            

            


              193
              
%%PLIST_MEMENEW%%share/EMBOSS/doc/html/embassy/memenew/index.html

            

            


              194
              
%%PLIST_MEMENEW%%share/EMBOSS/doc/html/embassy/memenew/emast.html

            

            


              195
              
%%PLIST_MEMENEW%%share/EMBOSS/doc/html/embassy/memenew/ememe.html

            

            


              196
              
%%PLIST_MEMENEW%%@dirrm share/EMBOSS/doc/html/embassy/memenew

            

            


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%%PLIST_MEMENEW%%bin/emast

            

            


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%%PLIST_MEMENEW%%bin/ememe

            

            


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%%PLIST_MSE%%share/EMBOSS/acd/mse.acd

            

            


              200
              
%%PLIST_MSE%%share/EMBOSS/doc/programs/text/mse.txt

            

            


              201
              
%%PLIST_MSE%%share/EMBOSS/doc/html/embassy/mse/index.html

            

            


              202
              
%%PLIST_MSE%%share/EMBOSS/doc/html/embassy/mse/mse.html

            

            


              203
              
%%PLIST_MSE%%@dirrm share/EMBOSS/doc/html/embassy/mse

            

            


              204
              
%%PLIST_MSE%%lib/libckit.so.1

            

            


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%%PLIST_MSE%%lib/libckit.so

            

            


              206
              
%%PLIST_MSE%%lib/libckit.la

            

            


              207
              
%%PLIST_MSE%%lib/libckit.a

            

            


              208
              
%%PLIST_MSE%%bin/mse

            

            


              209
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fclique.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fconsense.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fcontml.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fcontrast.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdiscboot.acd

            

            


              214
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdnacomp.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdnadist.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdnainvar.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdnaml.acd

            

            


              218
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdnamlk.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdnamove.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdnapars.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdnapenny.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdollop.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdolmove.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdolpenny.acd

            

            


              225
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdrawgram.acd

            

            


              226
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fdrawtree.acd

            

            


              227
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/ffactor.acd

            

            


              228
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/ffitch.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/ffreqboot.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fgendist.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fkitsch.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fmix.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fmove.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fneighbor.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fpars.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fpenny.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fproml.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fpromlk.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fprotdist.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fprotpars.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/frestboot.acd

            

            


              242
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/frestdist.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/frestml.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fretree.acd

            

            


              245
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fseqboot.acd

            

            


              246
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/fseqbootall.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/ftreedist.acd

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/acd/ftreedistpair.acd

            

            


              249
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fclique.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fconsense.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fcontml.txt

            

            


              252
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fcontrast.txt

            

            


              253
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdiscboot.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdnacomp.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdnadist.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdnainvar.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdnaml.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdnamlk.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdnapars.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdnapenny.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdollop.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdolpenny.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdrawgram.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fdrawtree.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/ffactor.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/ffitch.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/ffreqboot.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fgendist.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fkitsch.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fmix.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fmove.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fneighbor.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fpars.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fpenny.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fproml.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fpromlk.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fprotdist.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fprotpars.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/frestboot.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/frestml.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fretree.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fseqboot.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/fseqbootall.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/ftreedist.txt

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/programs/text/ftreedistpair.txt

            

            


              286
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/index.html

            

            


              287
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fclique.html

            

            


              288
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fconsense.html

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fcontml.html

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fcontrast.html

            

            


              291
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fdiscboot.html

            

            


              292
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fdnacomp.html

            

            


              293
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fdnadist.html

            

            


              294
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fdnainvar.html

            

            


              295
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fdnaml.html

            

            


              296
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fdnamlk.html

            

            


              297
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fdnapars.html

            

            


              298
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fdnapenny.html

            

            


              299
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fdollop.html

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fdolpenny.html

            

            


              301
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fdrawgram.html

            

            


              302
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fdrawtree.html

            

            


              303
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/ffactor.html

            

            


              304
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/ffitch.html

            

            


              305
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/ffreqboot.html

            

            


              306
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fmix.html

            

            


              307
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fgendist.html

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fkitsch.html

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fmove.html

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fneighbor.html

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fpars.html

            

            


              312
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fpenny.html

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fproml.html

            

            


              314
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fpromlk.html

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fprotdist.html

            

            


              316
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fprotpars.html

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/frestboot.html

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/frestml.html

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fretree.html

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fseqboot.html

            

            


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%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/fseqbootall.html

            

            


              322
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/ftreedist.html

            

            


              323
              
%%PLIST_PHYLIPNEW%%share/EMBOSS/doc/html/embassy/phylipnew/ftreedistpair.html

            

            


              324
              
%%PLIST_PHYLIPNEW%%@dirrm share/EMBOSS/doc/html/embassy/phylipnew

            

            


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%%PLIST_PHYLIPNEW%%share/PHYLIPNEW/data/font1

            

            


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%%PLIST_PHYLIPNEW%%share/PHYLIPNEW/data/font2

            

            


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%%PLIST_PHYLIPNEW%%share/PHYLIPNEW/data/font6

            

            


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%%PLIST_PHYLIPNEW%%@dirrm share/PHYLIPNEW/data

            

            


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%%PLIST_PHYLIPNEW%%@dirrm share/PHYLIPNEW

            

            


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%%PLIST_PHYLIPNEW%%bin/fclique

            

            


              334
              
%%PLIST_PHYLIPNEW%%bin/fconsense

            

            


              335
              
%%PLIST_PHYLIPNEW%%bin/fcontml

            

            


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%%PLIST_PHYLIPNEW%%bin/fcontrast

            

            


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%%PLIST_PHYLIPNEW%%bin/fdnacomp

            

            


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%%PLIST_PHYLIPNEW%%bin/fdnadist

            

            


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%%PLIST_PHYLIPNEW%%bin/fdnainvar

            

            


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%%PLIST_PHYLIPNEW%%bin/fdnaml

            

            


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%%PLIST_PHYLIPNEW%%bin/fdnamlk

            

            


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%%PLIST_PHYLIPNEW%%bin/fdnamove

            

            


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%%PLIST_PHYLIPNEW%%bin/fdnapars

            

            


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%%PLIST_PHYLIPNEW%%bin/fdnapenny

            

            


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%%PLIST_PHYLIPNEW%%bin/fdolmove

            

            


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%%PLIST_PHYLIPNEW%%bin/fdollop

            

            


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%%PLIST_PHYLIPNEW%%bin/fdolpenny

            

            


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%%PLIST_PHYLIPNEW%%bin/fdrawgram

            

            


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%%PLIST_PHYLIPNEW%%bin/fdrawtree

            

            


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%%PLIST_PHYLIPNEW%%bin/ffactor

            

            


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%%PLIST_PHYLIPNEW%%bin/ffitch

            

            


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%%PLIST_PHYLIPNEW%%bin/fgendist

            

            


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%%PLIST_PHYLIPNEW%%bin/fkitsch

            

            


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%%PLIST_PHYLIPNEW%%bin/fmix

            

            


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%%PLIST_PHYLIPNEW%%bin/fmove

            

            


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%%PLIST_PHYLIPNEW%%bin/fneighbor

            

            


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%%PLIST_PHYLIPNEW%%bin/fpars

            

            


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%%PLIST_PHYLIPNEW%%bin/fpenny

            

            


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%%PLIST_PHYLIPNEW%%bin/fproml

            

            


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%%PLIST_PHYLIPNEW%%bin/fpromlk

            

            


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%%PLIST_PHYLIPNEW%%bin/fprotdist

            

            


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%%PLIST_PHYLIPNEW%%bin/fprotpars

            

            


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%%PLIST_PHYLIPNEW%%bin/frestdist

            

            


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%%PLIST_PHYLIPNEW%%bin/frestml

            

            


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%%PLIST_PHYLIPNEW%%bin/fretree

            

            


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%%PLIST_PHYLIPNEW%%bin/fdiscboot

            

            


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%%PLIST_PHYLIPNEW%%bin/ffreqboot

            

            


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%%PLIST_PHYLIPNEW%%bin/frestboot

            

            


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%%PLIST_PHYLIPNEW%%bin/fseqboot

            

            


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%%PLIST_PHYLIPNEW%%bin/fseqbootall

            

            


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%%PLIST_PHYLIPNEW%%bin/ftreedist

            

            


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%%PLIST_PHYLIPNEW%%bin/ftreedistpair

            

        

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%%PLIST_TOPO%%share/EMBOSS/acd/topo.acd

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%%PLIST_TOPO%%share/EMBOSS/acd/topo.acd

        

            

              
              
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%%PLIST_TOPO%%share/EMBOSS/doc/programs/text/topo.txt

            

        

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%%PLIST_TOPO%%share/EMBOSS/doc/html/embassy/topo/index.html

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%%PLIST_TOPO%%share/EMBOSS/doc/html/embassy/topo/index.html

        

        

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%%PLIST_TOPO%%@dirrm share/EMBOSS/doc/html/embassy/topo

            

            

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%%PLIST_VIENNA%%bin/vrnaalifold


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%%PLIST_TOPO%%bin/topo

            

            

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%%PLIST_VIENNA%%bin/vrnacofoldpf


              
              
            

            

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%%PLIST_VIENNA%%bin/vrnaevalpair


            

            

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%%PLIST_VIENNA%%bin/vrnainverse


            

            

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%%PLIST_VIENNA%%bin/vrnaalifoldpf


            

            

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%%PLIST_VIENNA%%bin/vrnadistance


            

            

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%%PLIST_VIENNA%%bin/vrnafold


            

            

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%%PLIST_VIENNA%%bin/vrnalfold


            

            

              383
              
%%PLIST_VIENNA%%bin/vrnacofold


            

            

              384
              
%%PLIST_VIENNA%%bin/vrnaduplex


            

            

              385
              
%%PLIST_VIENNA%%bin/vrnafoldpf


            

            

              386
              
%%PLIST_VIENNA%%bin/vrnaplot


            

            

              387
              
%%PLIST_VIENNA%%bin/vrnacofoldconc


            

            

              388
              
%%PLIST_VIENNA%%bin/vrnaeval


            

            

              389
              
%%PLIST_VIENNA%%bin/vrnaheat


            

            

              390
              
%%PLIST_VIENNA%%bin/vrnasubopt


            

        

          391
          
%%PLIST_VIENNA%%share/EMBOSS/acd/vrnaalifold.acd

          379
          
%%PLIST_VIENNA%%share/EMBOSS/acd/vrnaalifold.acd

        

        

          392
          
%%PLIST_VIENNA%%share/EMBOSS/acd/vrnadistance.acd

          380
          
%%PLIST_VIENNA%%share/EMBOSS/acd/vrnadistance.acd

        

        

          393
          
%%PLIST_VIENNA%%share/EMBOSS/acd/vrnafoldpf.acd

          381
          
%%PLIST_VIENNA%%share/EMBOSS/acd/vrnafoldpf.acd

        

  

    
      
            Lines 405-410
          
      
      
        Link Here
      
    
  

        

          405
          
%%PLIST_VIENNA%%share/EMBOSS/acd/vrnacofoldpf.acd

          393
          
%%PLIST_VIENNA%%share/EMBOSS/acd/vrnacofoldpf.acd

        

        

          406
          
%%PLIST_VIENNA%%share/EMBOSS/acd/vrnafold.acd

          394
          
%%PLIST_VIENNA%%share/EMBOSS/acd/vrnafold.acd

        

        

          407
          
%%PLIST_VIENNA%%share/EMBOSS/acd/vrnapaln.acd

          395
          
%%PLIST_VIENNA%%share/EMBOSS/acd/vrnapaln.acd

        

            

              
              
              396
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaalifold.txt

            

            

              397
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaalifoldpf.txt

            

            

              398
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnacofold.txt

            

            

              399
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnacofoldconc.txt

            

            

              400
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnacofoldpf.txt

            

            

              401
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnadistance.txt

            

            

              402
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaduplex.txt

            

            

              403
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaeval.txt

            

            

              404
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaevalpair.txt

            

            

              405
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnafold.txt

            

            

              406
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnafoldpf.txt

            

            

              407
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaheat.txt

            

            

              408
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnainverse.txt

            

            

              409
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnalfold.txt

            

            

              410
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaplot.txt

            

            

              411
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnasubopt.txt

            

        

          408
          
%%PLIST_VIENNA%%share/EMBOSS/doc/html/embassy/vienna/index.html

          412
          
%%PLIST_VIENNA%%share/EMBOSS/doc/html/embassy/vienna/index.html

        

        

          409
          
%%PLIST_VIENNA%%share/EMBOSS/doc/html/embassy/vienna/vrnaalifold.html

          413
          
%%PLIST_VIENNA%%share/EMBOSS/doc/html/embassy/vienna/vrnaalifold.html

        

        

          410
          
%%PLIST_VIENNA%%share/EMBOSS/doc/html/embassy/vienna/vrnaalifoldpf.html

          414
          
%%PLIST_VIENNA%%share/EMBOSS/doc/html/embassy/vienna/vrnaalifoldpf.html

        

  

    
      
            Lines 422-459
          
      
      
        Link Here
      
    
  

        

          422
          
%%PLIST_VIENNA%%share/EMBOSS/doc/html/embassy/vienna/vrnalfold.html

          426
          
%%PLIST_VIENNA%%share/EMBOSS/doc/html/embassy/vienna/vrnalfold.html

        

        

          423
          
%%PLIST_VIENNA%%share/EMBOSS/doc/html/embassy/vienna/vrnaplot.html

          427
          
%%PLIST_VIENNA%%share/EMBOSS/doc/html/embassy/vienna/vrnaplot.html

        

        

          424
          
%%PLIST_VIENNA%%share/EMBOSS/doc/html/embassy/vienna/vrnasubopt.html

          428
          
%%PLIST_VIENNA%%share/EMBOSS/doc/html/embassy/vienna/vrnasubopt.html

        

          
            

              425
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaalifold.txt


              429
              
%%PLIST_VIENNA%%@dirrm share/EMBOSS/doc/html/embassy/vienna

            

            

              426
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaalifoldpf.txt


              
              
            

            

              427
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnacofold.txt


            

            

              428
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnacofoldconc.txt


            

            

              429
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnacofoldpf.txt


            

            

              430
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnadistance.txt


            

            

              431
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaduplex.txt


            

            

              432
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaeval.txt


            

            

              433
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaevalpair.txt


            

            

              434
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnafold.txt


            

            

              435
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnafoldpf.txt


            

            

              436
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaheat.txt


            

            

              437
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnainverse.txt


            

            

              438
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnalfold.txt


            

            

              439
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnaplot.txt


            

            

              440
              
%%PLIST_VIENNA%%share/EMBOSS/doc/programs/text/vrnasubopt.txt


            

        

          441
          
%%PLIST_VIENNA%%lib/libviennarna.so.1

          430
          
%%PLIST_VIENNA%%lib/libviennarna.so.1

        

        

          442
          
%%PLIST_VIENNA%%lib/libviennarna.so

          431
          
%%PLIST_VIENNA%%lib/libviennarna.so

        

        

          443
          
%%PLIST_VIENNA%%lib/libviennarna.la

          432
          
%%PLIST_VIENNA%%lib/libviennarna.la

        

        

          444
          
%%PLIST_VIENNA%%lib/libviennarna.a

          433
          
%%PLIST_VIENNA%%lib/libviennarna.a

        

          
            

              445
              
@dirrmtry share/EMBOSS/doc/html/embassy/vienna


              434
              
%%PLIST_VIENNA%%bin/vrnaalifold

            

            

              446
              
@dirrmtry share/EMBOSS/doc/html/embassy/topo


              435
              
%%PLIST_VIENNA%%bin/vrnacofoldpf

            

            

              447
              
@dirrmtry share/EMBOSS/doc/html/embassy/structure


              436
              
%%PLIST_VIENNA%%bin/vrnaevalpair

            

            

              448
              
@dirrmtry share/EMBOSS/doc/html/embassy/signature


              437
              
%%PLIST_VIENNA%%bin/vrnainverse

            

            

              449
              
@dirrmtry share/EMBOSS/doc/html/embassy/phylipnew


              438
              
%%PLIST_VIENNA%%bin/vrnaalifoldpf

            

            

              450
              
@dirrmtry share/EMBOSS/doc/html/embassy/myseq


              439
              
%%PLIST_VIENNA%%bin/vrnadistance

            

            

              451
              
@dirrmtry share/EMBOSS/doc/html/embassy/mse


              440
              
%%PLIST_VIENNA%%bin/vrnafold

            

            

              452
              
@dirrmtry share/EMBOSS/doc/html/embassy/memenew


              441
              
%%PLIST_VIENNA%%bin/vrnalfold

            

            

              453
              
@dirrmtry share/EMBOSS/doc/html/embassy/hmmernew


              442
              
%%PLIST_VIENNA%%bin/vrnacofold

            

            

              454
              
@dirrmtry share/EMBOSS/doc/html/embassy/esim4


              443
              
%%PLIST_VIENNA%%bin/vrnaduplex

            

            

              455
              
@dirrmtry share/EMBOSS/doc/html/embassy/emnu


              444
              
%%PLIST_VIENNA%%bin/vrnafoldpf

            

            

              456
              
@dirrmtry share/EMBOSS/doc/html/embassy/domsearch


              445
              
%%PLIST_VIENNA%%bin/vrnaplot

            

            

              457
              
@dirrmtry share/EMBOSS/doc/html/embassy/domalign


              446
              
%%PLIST_VIENNA%%bin/vrnacofoldconc

            

            

              458
              
@dirrmtry share/EMBOSS/doc/html/embassy/domainatrix


              447
              
%%PLIST_VIENNA%%bin/vrnaeval

            

            

              459
              
@dirrmtry share/EMBOSS/doc/html/embassy


              448
              
%%PLIST_VIENNA%%bin/vrnaheat

            

            

              
              

              449
              
%%PLIST_VIENNA%%bin/vrnasubopt

            

            


              450
              
%%PLIST_MIRA%%share/EMBOSS/acd/emira.acd

            

            


              451
              
%%PLIST_MIRA%%share/EMBOSS/acd/emiraest.acd

            

            


              452
              
%%PLIST_MIRA%%bin/emira

            

            


              453
              
%%PLIST_MIRA%%bin/emiraest

            

            


              454
              
%%PLIST_IPRSCAN%%share/EMBOSS/acd/eiprscan.acd

            

            


              455
              
%%PLIST_IPRSCAN%%bin/eiprscan

            

            


              456
              
%%PLIST_CBSTOOLS%%share/EMBOSS/acd/echlorop.acd

            

            


              457
              
%%PLIST_CBSTOOLS%%share/EMBOSS/acd/elipop.acd

            

            


              458
              
%%PLIST_CBSTOOLS%%share/EMBOSS/acd/enetnglyc.acd

            

            


              459
              
%%PLIST_CBSTOOLS%%share/EMBOSS/acd/enetoglyc.acd

            

            


              460
              
%%PLIST_CBSTOOLS%%share/EMBOSS/acd/enetphos.acd

            

            


              461
              
%%PLIST_CBSTOOLS%%share/EMBOSS/acd/eprop.acd

            

            


              462
              
%%PLIST_CBSTOOLS%%share/EMBOSS/acd/esignalp.acd

            

            


              463
              
%%PLIST_CBSTOOLS%%share/EMBOSS/acd/etmhmm.acd

            

            


              464
              
%%PLIST_CBSTOOLS%%share/EMBOSS/acd/eyinoyang.acd

            

            


              465
              
%%PLIST_CBSTOOLS%%bin/esignalp

            

            


              466
              
%%PLIST_CBSTOOLS%%bin/etmhmm

            

            


              467
              
%%PLIST_CBSTOOLS%%bin/enetnglyc

            

            


              468
              
%%PLIST_CBSTOOLS%%bin/enetoglyc

            

            


              469
              
%%PLIST_CBSTOOLS%%bin/enetphos

            

            


              470
              
%%PLIST_CBSTOOLS%%bin/eprop

            

            


              471
              
%%PLIST_CBSTOOLS%%bin/eyinoyang

            

            


              472
              
%%PLIST_CBSTOOLS%%bin/echlorop

            

            


              473
              
%%PLIST_CBSTOOLS%%bin/elipop

            

            


              474
              
@dirrm share/EMBOSS/doc/html/embassy

            

            


              475
              
@dirrmtry share/EMBOSS/doc/html

            

            


              476
              
@dirrmtry share/EMBOSS/doc

            

            


              477
              
@dirrmtry share/EMBOSS

            

            


              478
              
@dirrmtry share

            






  

  Return to bug 135376