# This is a shell archive.  Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file".  Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
#	pycogent
#	pycogent/Makefile
#	pycogent/distinfo
#	pycogent/pkg-descr
#	pycogent/pkg-plist
#
echo c - pycogent
mkdir -p pycogent > /dev/null 2>&1
echo x - pycogent/Makefile
sed 's/^X//' >pycogent/Makefile << '75b6d9d52a590046a885ebab70b8caf4'
X# New ports collection makefile for:	pycogent
X# Date created:		20 June, 2009
X# Whom:			Wen Heping <wenheping@gmail.com>
X#
X# $FreeBSD$
X#
X
XPORTNAME=	pycogent
XPORTVERSION=	1.3.1
XCATEGORIES=	biology python
XMASTER_SITES=	SF
XDISTNAME=	PyCogent-${PORTVERSION}
XEXTRACT_SUFX=	.tgz
X
XMAINTAINER=	wenheping@gmail.com
XCOMMENT=	A toolkit for statistical analysis of biological sequences
X
XBUILD_DEPENDS=	${PYNUMPY} \
X		${LOCALBASE}/bin/cython:${PORTSDIR}/lang/cython \
X		${LOCALBASE}/bin/sphinx-build:${PORTSDIR}/textproc/py-sphinx \
X		${PYTHON_PKGNAMEPREFIX}sqlalchemy>=0.5:${PORTSDIR}/databases/py-sqlalchemy
XRUN_DEPENDS=	${BUILD_DEPENDS}
X
XUSE_PYTHON=		yes
XUSE_PYDISTUTILS=	yes
XPYDISTUTILS_PKGNAME=	cogent
X
X.include <bsd.port.mk>
75b6d9d52a590046a885ebab70b8caf4
echo x - pycogent/distinfo
sed 's/^X//' >pycogent/distinfo << 'e4e6cbd5a9ee9db6f60e5e3f452bfa0f'
XMD5 (PyCogent-1.3.1.tgz) = 4cc108a69e5ffd343508db4615514b74
XSHA256 (PyCogent-1.3.1.tgz) = 56636a2aeee464968056458f8384262f874cdac12b89a43c4c3e5d88582a7fc6
XSIZE (PyCogent-1.3.1.tgz) = 2062874
e4e6cbd5a9ee9db6f60e5e3f452bfa0f
echo x - pycogent/pkg-descr
sed 's/^X//' >pycogent/pkg-descr << '39f14c750cb59f4eb8126d2c49207b4f'
XPyCogent is a software library for genomic biology. It is a fully integrated
Xand thoroughly tested framework for: controlling third-party applications;
Xdevising workflows; querying databases; conducting novel probabilistic
Xanalyses of biological sequence evolution; and generating publication quality
Xgraphics. It is distinguished by many unique built-in capabilities (such as
Xtrue codon alignment) and the frequent addition of entirely new methods for
Xthe analysis of genomic data.
X
XWWW:	http://pycogent.sourceforge.net/
39f14c750cb59f4eb8126d2c49207b4f
echo x - pycogent/pkg-plist
sed 's/^X//' >pycogent/pkg-plist << '57a008b0ebd7f436ef4637679dbbc9dd'
X%%PYTHON_SITELIBDIR%%/cogent/__init__.py
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X%%PYTHON_SITELIBDIR%%/cogent/align/algorithm.py
X%%PYTHON_SITELIBDIR%%/cogent/align/algorithm.pyc
X%%PYTHON_SITELIBDIR%%/cogent/align/algorithm.pyo
X%%PYTHON_SITELIBDIR%%/cogent/align/align.py
X%%PYTHON_SITELIBDIR%%/cogent/align/align.pyc
X%%PYTHON_SITELIBDIR%%/cogent/align/align.pyo
X%%PYTHON_SITELIBDIR%%/cogent/align/dp_calculation.py
X%%PYTHON_SITELIBDIR%%/cogent/align/dp_calculation.pyc
X%%PYTHON_SITELIBDIR%%/cogent/align/dp_calculation.pyo
X%%PYTHON_SITELIBDIR%%/cogent/align/indel_model.py
X%%PYTHON_SITELIBDIR%%/cogent/align/indel_model.pyc
X%%PYTHON_SITELIBDIR%%/cogent/align/indel_model.pyo
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X%%PYTHON_SITELIBDIR%%/cogent/app/__init__.py
X%%PYTHON_SITELIBDIR%%/cogent/app/__init__.pyc
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X%%PYTHON_SITELIBDIR%%/cogent/app/clearcut.py
X%%PYTHON_SITELIBDIR%%/cogent/app/clearcut.pyc
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X%%PYTHON_SITELIBDIR%%/cogent/app/comrna.py
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X%%PYTHON_SITELIBDIR%%/cogent/app/comrna.pyo
X%%PYTHON_SITELIBDIR%%/cogent/app/consan.py
X%%PYTHON_SITELIBDIR%%/cogent/app/consan.pyc
X%%PYTHON_SITELIBDIR%%/cogent/app/consan.pyo
X%%PYTHON_SITELIBDIR%%/cogent/app/contrafold.py
X%%PYTHON_SITELIBDIR%%/cogent/app/contrafold.pyc
X%%PYTHON_SITELIBDIR%%/cogent/app/contrafold.pyo
X%%PYTHON_SITELIBDIR%%/cogent/app/cove.py
X%%PYTHON_SITELIBDIR%%/cogent/app/cove.pyc
X%%PYTHON_SITELIBDIR%%/cogent/app/cove.pyo
X%%PYTHON_SITELIBDIR%%/cogent/app/dialign.py
X%%PYTHON_SITELIBDIR%%/cogent/app/dialign.pyc
X%%PYTHON_SITELIBDIR%%/cogent/app/dialign.pyo
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57a008b0ebd7f436ef4637679dbbc9dd
exit