Attachment 97155 Details for Bug 135863 – file.shar

file.shar

file.shar (text/plain), 43.35 KB, created by wenheping on 2009-06-20 14:50:03 UTC

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Description:

Filename:

MIME Type:

Creator: wenheping

Created: 2009-06-20 14:50:03 UTC

Size: 43.35 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	pycogent
>#	pycogent/Makefile
>#	pycogent/distinfo
>#	pycogent/pkg-descr
>#	pycogent/pkg-plist
>#
>echo c - pycogent
>mkdir -p pycogent > /dev/null 2>&1
>echo x - pycogent/Makefile
>sed 's/^X//' >pycogent/Makefile << '75b6d9d52a590046a885ebab70b8caf4'
>X# New ports collection makefile for:	pycogent
>X# Date created:		20 June, 2009
>X# Whom:			Wen Heping <wenheping@gmail.com>
>X#
>X# $FreeBSD$
>X#
>X
>XPORTNAME=	pycogent
>XPORTVERSION=	1.3.1
>XCATEGORIES=	biology python
>XMASTER_SITES=	SF
>XDISTNAME=	PyCogent-${PORTVERSION}
>XEXTRACT_SUFX=	.tgz
>X
>XMAINTAINER=	wenheping@gmail.com
>XCOMMENT=	A toolkit for statistical analysis of biological sequences
>X
>XBUILD_DEPENDS=	${PYNUMPY} \
>X		${LOCALBASE}/bin/cython:${PORTSDIR}/lang/cython \
>X		${LOCALBASE}/bin/sphinx-build:${PORTSDIR}/textproc/py-sphinx \
>X		${PYTHON_PKGNAMEPREFIX}sqlalchemy>=0.5:${PORTSDIR}/databases/py-sqlalchemy
>XRUN_DEPENDS=	${BUILD_DEPENDS}
>X
>XUSE_PYTHON=		yes
>XUSE_PYDISTUTILS=	yes
>XPYDISTUTILS_PKGNAME=	cogent
>X
>X.include <bsd.port.mk>
>75b6d9d52a590046a885ebab70b8caf4
>echo x - pycogent/distinfo
>sed 's/^X//' >pycogent/distinfo << 'e4e6cbd5a9ee9db6f60e5e3f452bfa0f'
>XMD5 (PyCogent-1.3.1.tgz) = 4cc108a69e5ffd343508db4615514b74
>XSHA256 (PyCogent-1.3.1.tgz) = 56636a2aeee464968056458f8384262f874cdac12b89a43c4c3e5d88582a7fc6
>XSIZE (PyCogent-1.3.1.tgz) = 2062874
>e4e6cbd5a9ee9db6f60e5e3f452bfa0f
>echo x - pycogent/pkg-descr
>sed 's/^X//' >pycogent/pkg-descr << '39f14c750cb59f4eb8126d2c49207b4f'
>XPyCogent is a software library for genomic biology. It is a fully integrated
>Xand thoroughly tested framework for: controlling third-party applications;
>Xdevising workflows; querying databases; conducting novel probabilistic
>Xanalyses of biological sequence evolution; and generating publication quality
>Xgraphics. It is distinguished by many unique built-in capabilities (such as
>Xtrue codon alignment) and the frequent addition of entirely new methods for
>Xthe analysis of genomic data.
>X
>XWWW:	http://pycogent.sourceforge.net/
>39f14c750cb59f4eb8126d2c49207b4f
>echo x - pycogent/pkg-plist
>sed 's/^X//' >pycogent/pkg-plist << '57a008b0ebd7f436ef4637679dbbc9dd'
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>X%%PYTHON_SITELIBDIR%%/cogent/align/align.py
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>X%%PYTHON_SITELIBDIR%%/cogent/align/dp_calculation.pyo
>X%%PYTHON_SITELIBDIR%%/cogent/align/indel_model.py
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>X%%PYTHON_SITELIBDIR%%/cogent/align/partial_order_graph.pyo
>X%%PYTHON_SITELIBDIR%%/cogent/align/progressive.py
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>X@dirrm %%PYTHON_SITELIBDIR%%/cogent/maths/matrix
>X@dirrm %%PYTHON_SITELIBDIR%%/cogent/maths/stats/cai
>X@dirrm %%PYTHON_SITELIBDIR%%/cogent/maths/stats
>X@dirrm %%PYTHON_SITELIBDIR%%/cogent/maths/unifrac
>X@dirrm %%PYTHON_SITELIBDIR%%/cogent/maths
>X@dirrm %%PYTHON_SITELIBDIR%%/cogent/motif
>X@dirrm %%PYTHON_SITELIBDIR%%/cogent/parse
>X@dirrm %%PYTHON_SITELIBDIR%%/cogent/phylo
>X@dirrm %%PYTHON_SITELIBDIR%%/cogent/recalculation
>X@dirrm %%PYTHON_SITELIBDIR%%/cogent/seqsim
>X@dirrm %%PYTHON_SITELIBDIR%%/cogent/struct
>X@dirrm %%PYTHON_SITELIBDIR%%/cogent/util
>X@dirrm %%PYTHON_SITELIBDIR%%/cogent/
>57a008b0ebd7f436ef4637679dbbc9dd
>exit

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Attachments on bug 135863: 97155