Attachment #98678 for bug #137625

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#

PORTNAME=	paml
PORTVERSION=	4.3
CATEGORIES=	biology
MASTER_SITES=	http://abacus.gene.ucl.ac.uk/software/
DISTNAME=	${PORTNAME}${PORTVERSION}

COMMENT=	Phylogenetic Analysis by Maximum Likelihood (PAML)

USE_GMAKE=	YES
WRKSRC=		${WRKDIR}/${PORTNAME}43/src
MAKE_ARGS=	CC="${CC}" CFLAGS="${CFLAGS}"

BINARIES=	baseml basemlg chi2 codeml evolver pamp yn00

.if !defined(NOPORTDOCS)
	${MKDIR} ${DOCSDIR}
.for f in ${DOC_FILES}
	${INSTALL_DATA} ${WRKDIR}/${PORTNAME}43/doc/${f} ${DOCSDIR}
.endfor
.endif


Lines 1-3 Link Here

(-)distinfo (-3 / +3 lines)
1	MD5 (paml4.2b.tar.gz) = 9f1f5842534aeeb8101d402abaa1fee1	1	MD5 (paml4.3.tar.gz) = 67ef796d0a61d959192c548043496018
2	SHA256 (paml4.2b.tar.gz) = fc11d44cfb31d303ec619156649dd2f264de743c64ebe21263cdffb09064904a	2	SHA256 (paml4.3.tar.gz) = eeed8c73e6ef468663dc77c8bb7b47e41358a2efca09da918c584c3009931fc4
3	SIZE (paml4.2b.tar.gz) = 2637368	3	SIZE (paml4.3.tar.gz) = 2811793

Return to bug 137625

Lines 6-12 Link Here

(-)Makefile (-3 / +3 lines)
6	#	6	#
7		7
8	PORTNAME= paml	8	PORTNAME= paml
9	PORTVERSION= 4.2b	9	PORTVERSION= 4.3
10	CATEGORIES= biology	10	CATEGORIES= biology
11	MASTER_SITES= http://abacus.gene.ucl.ac.uk/software/	11	MASTER_SITES= http://abacus.gene.ucl.ac.uk/software/
12	DISTNAME= ${PORTNAME}${PORTVERSION}	12	DISTNAME= ${PORTNAME}${PORTVERSION}
Lines 15-21 Link Here
15	COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML)	15	COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML)
16		16
17	USE_GMAKE= YES	17	USE_GMAKE= YES
18	WRKSRC= ${WRKDIR}/${PORTNAME}42/src	18	WRKSRC= ${WRKDIR}/${PORTNAME}43/src
19	MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS}"	19	MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS}"
20		20
21	BINARIES= baseml basemlg chi2 codeml evolver pamp yn00	21	BINARIES= baseml basemlg chi2 codeml evolver pamp yn00
Lines 28-34 Link Here
28	.if !defined(NOPORTDOCS)	28	.if !defined(NOPORTDOCS)
29	${MKDIR} ${DOCSDIR}	29	${MKDIR} ${DOCSDIR}
30	.for f in ${DOC_FILES}	30	.for f in ${DOC_FILES}
31	${INSTALL_DATA} ${WRKDIR}/${PORTNAME}42/doc/${f} ${DOCSDIR}	31	${INSTALL_DATA} ${WRKDIR}/${PORTNAME}43/doc/${f} ${DOCSDIR}
32	.endfor	32	.endfor
33	.endif	33	.endif
34		34