Bug 111817
| Summary: | [PATCH] biology/py-biopython: update to 1.43 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Product: | Ports & Packages | Reporter: | P.BandieraPaiva <paiva> | ||||||||||
| Component: | Individual Port(s) | Assignee: | Martin Wilke <miwi> | ||||||||||
| Status: | Closed FIXED | ||||||||||||
| Severity: | Affects Only Me | CC: | mauricio | ||||||||||
| Priority: | Normal | ||||||||||||
| Version: | Latest | ||||||||||||
| Hardware: | Any | ||||||||||||
| OS: | Any | ||||||||||||
| Attachments: |
|
||||||||||||
|
Description
P.BandieraPaiva
2007-04-18 14:20:01 UTC
Responsible Changed From-To: freebsd-ports-bugs->freebsd-python freebsd-python@ wants to have py- PRs State Changed From-To: open->feedback Awaiting maintainers feedback Responsible Changed From-To: freebsd-python->miwi I'll take it. I've reviewed and asked the submitter to correct the patch (the current one is deleting the pkg-plist file). He should resend it using the same PR. Regards, Mauricio. -- MAURICIO HERRERA CUADRA mauricio@arareko.net http://www.arareko.net/ ----- Original Message ---- From: Edwin Groothuis <edwin@FreeBSD.org> To: mauricio@arareko.net Sent: Wednesday, April 18, 2007 8:20:42 AM Subject: Re: ports/111817: [PATCH] biology/py-biopython: update to 1.43 Maintainer of biology/py-biopython, Please note that PR ports/111817 has just been submitted. If it contains a patch for an upgrade, an enhancement or a bug fix you agree on, reply to this email stating that you approve the patch and a committer will take care of it. The full text of the PR can be found at: http://www.freebsd.org/cgi/query-pr.cgi?pr=ports/111817 -- Edwin Groothuis edwin@FreeBSD.org __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com I am sending a new patch, with the pkg-plist file (as was requested by the maintainer. This patch replaces the previously submitted py24-biopython-1.43.patch I've reviewed and asked the submitter to correct the new patch (it's removing one dependency from BUILD_DEPENDS in the Makefile). He should resend it using the same PR. Regards, Mauricio. -- MAURICIO HERRERA CUADRA mauricio@arareko.net http://www.arareko.net/
I thought ${PYTHON_SITELIBDIR}/mx/TextTools/__init__.py was included in
${PORTSDIR}/lang/py-mx-base , thus the prior would not be needed if the later was satisfied.
This worked on 3 BSD systems in my lab, but that may work if my PYTHON_SITELIBDIR already contained the mx/TextTools
As I was not able to test this, I am sending a new patch, with the BUILD_DEPENDS corrected.
This patch replaces the previously submitted patches.
State Changed From-To: feedback->closed Maintainer not approved. He will send a new diff. Thanks for you submission. State Changed From-To: closed->open Reopen Maintainer pinged me via mail. The error is because the setup.py script goes into interactive mode asking to install some extra modules. I've created a extra patch for skipping this and which installs everything as default, please use the attachment as the definitive patch for the whole port. Regards, Mauricio. -- MAURICIO HERRERA CUADRA mauricio@arareko.net http://www.arareko.net/ ----- Original Message ---- From: Martin Wilke <miwi@FreeBSD.org> To: Mauricio Herrera Cuadra <mauricio@arareko.net> Sent: Monday, May 28, 2007 6:30:26 AM Subject: Re: ports/111817: [PATCH] biology/py-biopython: update to 1.43 http://miwi.homeunix.com/tb/errors/7.0-HEAD/py24-biopython-1.43.log build error. Could you fix this ? - -- Martin Wilke | irc.unixfreunde.de #bsd miwi@FreeBSD.org | miwi@unixfreunde.de FreeBSD Committer | Power to Serve The error is because the setup.py script goes into interactive mode asking to install some extra modules. I've created a extra patch for skipping this and which installs everything as default, please use the attachment as the definitive patch for the whole port. Regards, Mauricio. -- MAURICIO HERRERA CUADRA mauricio@arareko.net http://www.arareko.net/ ----- Original Message ---- From: Martin Wilke <miwi@FreeBSD.org> To: Mauricio Herrera Cuadra <mauricio@arareko.net> Sent: Monday, May 28, 2007 6:30:26 AM Subject: Re: ports/111817: [PATCH] biology/py-biopython: update to 1.43 http://miwi.homeunix.com/tb/errors/7.0-HEAD/py24-biopython-1.43.log build error. Could you fix this ? - -- Martin Wilke | irc.unixfreunde.de #bsd miwi@FreeBSD.org | miwi@unixfreunde.de FreeBSD Committer | Power to Serve State Changed From-To: open->closed Committed. Thanks! miwi 2007-05-30 06:57:20 UTC
FreeBSD ports repository
Modified files:
biology/py-biopython Makefile distinfo pkg-plist
Added files:
biology/py-biopython/files patch-setup.py
Log:
- Update to 1.43
PR: 111817
Submitted by: "P.BandieraPaiva" <paiva@unifesp.br>
Approved by: maintainer
Revision Changes Path
1.23 +4 -4 ports/biology/py-biopython/Makefile
1.14 +3 -3 ports/biology/py-biopython/distinfo
1.5 +34 -0 ports/biology/py-biopython/files/patch-setup.py (new)
1.13 +126 -85 ports/biology/py-biopython/pkg-plist
_______________________________________________
cvs-all@freebsd.org mailing list
http://lists.freebsd.org/mailman/listinfo/cvs-all
To unsubscribe, send any mail to "cvs-all-unsubscribe@freebsd.org"
|
