Bug 123303

Summary: [NEW PORT] science/pycdf : a python interface to the Unidata netCDF library
Product: Ports & Packages Reporter: wenheping <wenheping>
Component: Individual Port(s)Assignee: Martin Wilke <miwi>
Status: Closed FIXED    
Severity: Affects Only Me    
Priority: Normal    
Version: Latest   
Hardware: Any   
OS: Any   
Attachments:
Description Flags
file.shar
none
pycdf20080528.shar.txt
none
pycdf20080528.shar.txt none

Description wenheping 2008-05-01 17:00:02 UTC 
Pycdf is a python interface to the Unidata
netCDF library.  It provides an almost complete
coverage of the netCDF C API, wrapping it
inside easy to use python classes.

pycdf has been written so as to stick as closely
as possible to the naming conventions and
calling sequences documented inside the
"NetCDF Users Guide for C" manual. Even if
pycdf gives an OOP twist to the C API, the C
manual can be easily used as a documentary source
for pycdf, once the class to which a method
belongs has been identified, and of course once
requirements imposed by the Python langage have
been taken into account.

WWW:  http://pysclint.sourceforge.net/pycdf/

Fix: Patch attached with submission follows:
Comment 1 Edwin Groothuis freebsd_committer freebsd_triage 2008-05-01 17:00:17 UTC 
Responsible Changed
From-To: freebsd-ports-bugs->miwi

miwi@ wants his PRs (via the GNATS Auto Assign Tool)
Comment 2 Martin Wilke freebsd_committer freebsd_triage 2008-05-18 00:30:16 UTC 
State Changed
From-To: open->feedback

Hi Wen, 

Build failed, 


===>  Vulnerability check disabled, database not found ===>  Extracting 
for pycdf-0.6.3 => MD5 Checksum OK for pycdf-0.6-3b.tar.gz.  => SHA256 
Checksum OK for pycdf-0.6-3b.tar.gz.  ===>  Patching for pycdf-0.6.3 
===>   pycdf-0.6.3 depends on file: 
/usr/local/lib/python2.5/site-packages/numpy - found ===>   pycdf-0.6.3 
depends on file: /usr/local/lib/libnetcdf.so - found ===>   pycdf-0.6.3 
depends on file: /usr/local/bin/python2.5 - found ===>  Configuring for 
pycdf-0.6.3 running config ===>  Building for pycdf-0.6.3 running build 
running build_py creating build creating 
build/lib.freebsd-8.0-CURRENT-i386-2.5 creating 
build/lib.freebsd-8.0-CURRENT-i386-2.5/pycdf copying pycdf/__init__.py 
-> build/lib.freebsd-8.0-CURRENT-i386-2.5/pycdf copying pycdf/pycdf.py 
-> build/lib.freebsd-8.0-CURRENT-i386-2.5/pycdf copying 
pycdf/pycdfext.py -> build/lib.freebsd-8.0-CURRENT-i386-2.5/pycdf 
copying pycdf/pycdfext_array.py -> 
build/lib.freebsd-8.0-CURRENT-i386-2.5/pycdf running build_ext building 
'pycdf._pycdfext' extension C compiler: cc -DNDEBUG -O2 
-fno-strict-aliasing -pipe -D__wchar_t=wchar_t 
-DTHREAD_STACK_SIZE=0x20000 -O2 -pipe -fno-strict-aliasing -fPIC 

creating build/temp.freebsd-8.0-CURRENT-i386-2.5 creating 
build/temp.freebsd-8.0-CURRENT-i386-2.5/pycdf creating 
build/temp.freebsd-8.0-CURRENT-i386-2.5/pycdf/pycdfext creating 
build/temp.freebsd-8.0-CURRENT-i386-2.5/pycdf/pycdfext/numpy compile 
options: '-I/usr/local/lib/python2.5/site-packages/numpy/core/include 
-I/usr/local/include/python2.5 -c' cc: 
pycdf/pycdfext/numpy/pycdfext_wrap.c cc -shared -pthread -O2 -pipe 
-fno-strict-aliasing 
build/temp.freebsd-8.0-CURRENT-i386-2.5/pycdf/pycdfext/numpy/pycdfext_wrap.o 
-lnetcdf -o build/lib.freebsd-8.0-CURRENT-i386-2.5/pycdf/_pycdfext.so 
/usr/bin/ld: cannot find -lnetcdf /usr/bin/ld: cannot find -lnetcdf 
error: Command "cc -shared -pthread -O2 -pipe -fno-strict-aliasing 
build/temp.freebsd-8.0-CURRENT-i386-2.5/pycdf/pycdfext/numpy/pycdfext_wrap.o 
-lnetcdf -o build/lib.freebsd-8.0-CURRENT-i386-2.5/pycdf/_pycdfext.so" 
failed with exit status 1 *** Error code 1 

Stop in /usr/ports/science/pycdf.
Comment 3 Martin Wilke freebsd_committer freebsd_triage 2008-05-27 08:53:18 UTC 
State Changed
From-To: feedback->closed

Feedback timeout. If this problem still exists, please feel free to 
follow-up this PR so that we can re-open it and find a solution for the 
problem. Thanks!
Comment 4 Martin Wilke freebsd_committer freebsd_triage 2008-05-29 07:18:59 UTC 
State Changed
From-To: closed->open

submitter sent a new patch.
Comment 6 Martin Wilke freebsd_committer freebsd_triage 2008-06-03 10:41:18 UTC 
State Changed
From-To: feedback->closed

New port added. Thanks!
Comment 7 dfilter service freebsd_committer freebsd_triage 2008-06-03 10:41:48 UTC 
miwi        2008-06-03 09:41:36 UTC

  FreeBSD ports repository

  Modified files:
    science              Makefile 
  Added files:
    science/pycdf        Makefile distinfo pkg-descr pkg-plist 
    science/pycdf/files  patch-setup.py 
  Log:
  Pycdf is a python interface to the Unidata netCDF library. It provides an
  almost complete coverage of the netCDF C API, wrapping it inside easy to
  use python classes.
  
  WWW:  http://pysclint.sourceforge.net/pycdf/
  
  PR:             ports/123303
  Submitted by:   wenheping at gmail.com
  
  Revision  Changes    Path
  1.127     +1 -0      ports/science/Makefile
  1.1       +30 -0     ports/science/pycdf/Makefile (new)
  1.1       +3 -0      ports/science/pycdf/distinfo (new)
  1.1       +11 -0     ports/science/pycdf/files/patch-setup.py (new)
  1.1       +5 -0      ports/science/pycdf/pkg-descr (new)
  1.1       +14 -0     ports/science/pycdf/pkg-plist (new)
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