Bug 171949
| Summary: | graphics/graphviz: install: Unable to find pthread_create symbol. Aborting. | ||
|---|---|---|---|
| Product: | Ports & Packages | Reporter: | O. Hartmann <ohartmann> |
| Component: | Individual Port(s) | Assignee: | Dirk Meyer <dinoex> |
| Status: | Closed FIXED | ||
| Severity: | Affects Only Me | ||
| Priority: | Normal | ||
| Version: | Latest | ||
| Hardware: | Any | ||
| OS: | Any | ||
|
Description
O. Hartmann
2012-09-25 14:00:24 UTC
Responsible Changed From-To: freebsd-ports-bugs->dinoex Over to maintainer (via the GNATS Auto Assign Tool) This is a multi-part message in MIME format. State Changed From-To: open->feedback I can not reproduce your problem. the port builds fine here. Which options did you use? Am 09/27/12 21:06, schrieb dinoex@FreeBSD.org: > Synopsis: graphics/graphviz: install: Unable to find pthread_create symbol. Aborting. > > State-Changed-From-To: open->feedback > State-Changed-By: dinoex > State-Changed-When: Thu Sep 27 21:05:43 CEST 2012 > State-Changed-Why: > > I can not reproduce your problem. > the port builds fine here. > > Which options did you use? > > > http://www.freebsd.org/cgi/query-pr.cgi?pr=171949 > The configuration on the box in question is as follows: OS today with the same failure: FreeBSD 10.0-CURRENT #2 r240999M: Thu Sep 27 18:15:25 CEST 2012 amd64, CLANG 3.2 (buildworl, buildkernel) also used to build the port. ===> The following configuration options are available for graphviz-2.28.0_1: XPM=on: XPM pixmaps support DIGCOLA=on: neato layout engine wiwth DIGCOLA features IPSEPCOLA=on: neato layout engine wiwth IPSEPCOLA features ICONV=on: Encoding conversion support via iconv NLS=on: Native Language Support PANGOCAIRO=on: pangocairo support LIBRSVG2=off: SVG vector graphics support via librsvg2 GTK2=on: gtk2 plugin (requires PANGOCAIRO) GDK_PIXBUF=off: gdk pixbuf support GNOMEUI=off: libgnomeui support SMYRNA=off: SMYRNA graph viewer (requires GTK2) GVEDIT=off: gvedit (requires qt) MING=off: ming plugin DEVIL=off: devil plugin GHOSTSCRIPT=on: ghostscript plugin PERL=off: Perl bindings (swig) PHP=off: PHP bindings (swig) PYTHON=on: Python bindings (swig) RUBY=off: Ruby bindings (swig) LUA=off: Lua bindings (swig) TCL=off: TCL bindings (swig) GUILE=off: Guile bindings (swig) TK=on: TK toolkit support ===> Use 'make config' to modify these settings Hello, I have also reproduced this problem while building from ports (-tree updated moments ago). I'm tracking FreeBSD 8-Stable, and graphviz-2.28.0_1 also fails to build with the same error. The tip on the inclusion of "-lpthread" to LDFLAGS in the Makefile has also resolved the build error. State Changed From-To: feedback->analyzed Sorry the patch is not a solution. Some of the depenencies you use include pthread without registering it in the ".so". Build on pointhat is fine without "pthread", so won't fix graphviz. Confirmed on my end, too. Ports updated as of this morning. Can't install gimp due to the same error. uname -a output: FreeBSD pwnie 9.1-PRERELEASE FreeBSD 9.1-PRERELEASE #1 r241998+0adfd1a: Wed Oct 24 11:01:39 EDT 2012 shawn@shawn-vm-host:/usr/obj/usr/src/sys/SEC amd64 I faced the same problem today. Trying to narrow it down, it seems that the problem is caused by glXChooseVisual inside /usr/local/lib/libGL.so.1 from x11/nvidia-driver. This is the output running ldd on the backup libGL.so.1 from libGL-7.11.2_2: $ ldd /usr/local/lib/.libGL/libGL.so.1 /usr/local/lib/.libGL/libGL.so.1: libXext.so.6 => /usr/local/lib/libXext.so.6 (0x28202000) libXdamage.so.1 => /usr/local/lib/libXdamage.so.1 (0x28210000) libXfixes.so.3 => /usr/local/lib/libXfixes.so.3 (0x28213000) libXxf86vm.so.1 => /usr/local/lib/libXxf86vm.so.1 (0x28218000) libX11-xcb.so.1 => /usr/local/lib/libX11-xcb.so.1 (0x2821d000) libX11.so.6 => /usr/local/lib/libX11.so.6 (0x2821f000) libxcb-glx.so.0 => /usr/local/lib/libxcb-glx.so.0 (0x28334000) libxcb.so.2 => /usr/local/lib/libxcb.so.2 (0x28343000) libdrm.so.2 => /usr/local/lib/libdrm.so.2 (0x28359000) libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x28800000) libm.so.5 => /lib/libm.so.5 (0x28362000) libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x2837c000) libthr.so.3 => /lib/libthr.so.3 (0x28387000) libc.so.7 => /lib/libc.so.7 (0x2806c000) libXau.so.6 => /usr/local/lib/libXau.so.6 (0x283a7000) libXdmcp.so.6 => /usr/local/lib/libXdmcp.so.6 (0x283aa000) libpthread-stubs.so.0 => /usr/local/lib/libpthread-stubs.so.0 (0x283af000) librpcsvc.so.5 => /usr/lib/librpcsvc.so.5 (0x283b1000) And this one from the version installed by nvidia-driver: $ ldd /usr/local/lib/libGL.so.1 /usr/local/lib/libGL.so.1: libnvidia-tls.so.1 => /usr/local/lib/libnvidia-tls.so.1 (0x28267000) libnvidia-glcore.so.1 => /usr/local/lib/libnvidia-glcore.so.1 (0x28800000) libX11.so.6 => /usr/local/lib/libX11.so.6 (0x28269000) libXext.so.6 => /usr/local/lib/libXext.so.6 (0x2837e000) libc.so.7 => /lib/libc.so.7 (0x2806c000) libm.so.5 => /lib/libm.so.5 (0x2838c000) libxcb.so.2 => /usr/local/lib/libxcb.so.2 (0x283a6000) libXau.so.6 => /usr/local/lib/libXau.so.6 (0x283bc000) libXdmcp.so.6 => /usr/local/lib/libXdmcp.so.6 (0x283bf000) libpthread-stubs.so.0 => /usr/local/lib/libpthread-stubs.so.0 (0x283c4000) librpcsvc.so.5 => /usr/lib/librpcsvc.so.5 (0x283c6000) Can the error be caused by dot trying to dlopen libGL.so.1 and assuming that it's linked with libthr.so.3, while the one from nvidia-driver is not? I think that there are also other PR related to the same problem. Confirmed on 9.1-RELEASE amd64 with latest ports.
===> The following configuration options are available for graphviz-2.28.0_1:
XPM=on: XPM pixmaps
DIGCOLA=on: neato layout engine wiwth DIGCOLA features
IPSEPCOLA=on: neato layout engine wiwth IPSEPCOLA features
ICONV=on: Encoding conversion via iconv
NLS=on: Native Language Support
PANGOCAIRO=on: pangocairo support
LIBRSVG2=on: SVG vector graphics via librsvg2
GTK2=off: gtk2 plugin (requires PANGOCAIRO)
GDK_PIXBUF=off: gdk pixbuf support
GNOMEUI=off: libgnomeui support
SMYRNA=off: SMYRNA graph viewer (requires GTK2)
GVEDIT=off: gvedit (requires qt)
MING=off: ming plugin
DEVIL=off: devil plugin
GHOSTSCRIPT=off: ghostscript plugin
PERL=off: Perl bindings (swig)
PHP=off: PHP bindings (swig)
PYTHON=off: Python bindings (swig)
RUBY=off: Ruby bindings (swig)
LUA=off: Lua bindings (swig)
TCL=off: TCL bindings (swig)
GUILE=off: Guile bindings (swig)
TK=off: TK toolkit support
===> Use 'make config' to modify these settings
Confirm that bug exists.
Also confirm that adding pthread to libs fixes this (yes I have
nvidia-driver installed).
But would recommend to use this patch instead:
Index: Makefile
===================================================================
--- Makefile (revision 308920)
+++ Makefile (working copy)
@@ -108,6 +108,7 @@
--disable-io --disable-ocaml --disable-java \
--disable-sharp
+CONFIGURE_ENV+= LIBS="${PTHREAD_LIBS}"
CONFIGURE_ENV+= MISSING=${TRUE}
.if ${PORT_OPTIONS:MTK}
--
Vladimir Timofeev <vovkasm@gmail.com>
State Changed From-To: analyzed->closed - an option NVTHREADS was commited Author: dinoex Date: Fri Feb 8 11:30:13 2013 New Revision: 311936 URL: http://svnweb.freebsd.org/changeset/ports/311936 Log: - add option NVTHREADS for compatibility with nvidia libs PR: 171949 Modified: head/graphics/graphviz/Makefile Modified: head/graphics/graphviz/Makefile ============================================================================== --- head/graphics/graphviz/Makefile Fri Feb 8 09:42:12 2013 (r311935) +++ head/graphics/graphviz/Makefile Fri Feb 8 11:30:13 2013 (r311936) @@ -63,7 +63,7 @@ PDOCS_HTML= doc/*.html doc/info/*.gif USE_LDCONFIG= ${PREFIX}/lib/${PORTNAME} -OPTIONS_DEFINE= XPM DIGCOLA IPSEPCOLA ICONV NLS PANGOCAIRO LIBRSVG2 GTK2 GDK_PIXBUF GNOMEUI SMYRNA GVEDIT MING DEVIL GHOSTSCRIPT PERL PHP PYTHON RUBY LUA TCL GUILE TK +OPTIONS_DEFINE= XPM DIGCOLA IPSEPCOLA ICONV NLS PANGOCAIRO LIBRSVG2 GTK2 GDK_PIXBUF GNOMEUI SMYRNA GVEDIT MING DEVIL GHOSTSCRIPT PERL PHP PYTHON RUBY LUA TCL GUILE TK NVTHREADS OPTIONS_DEFAULT?= XPM DIGCOLA IPSEPCOLA ICONV NLS PANGOCAIRO NO_OPTIONS_SORT=yes DIGCOLA_DESC= neato layout engine wiwth DIGCOLA features @@ -85,6 +85,7 @@ LUA_DESC= Lua bindings (swig) TCL_DESC= TCL bindings (swig) GUILE_DESC= Guile bindings (swig) TK_DESC= TK toolkit support +NVTHREADS_DESC= Link with threads (needed for nvidia) .include <bsd.port.options.mk> @@ -398,6 +399,11 @@ CONFIGURE_ARGS+= --with-ghostscript=no PLIST_SUB+= WITH_GHOSTSCRIPT="@comment " .endif +.if ${PORT_OPTIONS:MNVTHREADS} +CFLAGS+= ${PTHREAD_CFLAGS} +LDFLAGS+= ${PTHREAD_LIBS} +.endif + post-patch: @${FIND} ${WRKSRC} -name Makefile.in | \ ${XARGS} ${REINPLACE_CMD} \ @@ -427,7 +433,7 @@ post-patch: @${REINPLACE_CMD} -e 's|#include "gui.h"|#include "gui/gui.h"|' \ ${WRKSRC}/cmd/smyrna/tvnodes.h ${CP} ${WRKSRC}/lib/cgraph/cgraph.h ${WRKSRC}/plugin/ming/ -.if defined(NOPORTDOCS) +.if ! ${PORT_OPTIONS:MDOCS} @${REINPLACE_CMD} -e 's| install-txtDATA$$||' \ ${WRKSRC}/Makefile.in .endif @@ -437,7 +443,7 @@ post-install: install-ldconfig-file ${MAKE} ${INSTALL_TARGET} cd ${WRKSRC} && \ ${INSTALL_DATA} ${FIX_INCLUDE} ${PREFIX}/include/graphviz/ -.if !defined(NOPORTDOCS) +.if ${PORT_OPTIONS:MDOCS} @${MKDIR} ${DOCSDIR} @${MKDIR} ${DOCSDIR}/html @${MKDIR} ${DOCSDIR}/pdf @@ -446,7 +452,7 @@ post-install: install-ldconfig-file ${INSTALL_DATA} ${PDOCS_PDF} ${DOCSDIR}/pdf/ && \ ${INSTALL_DATA} ${PDOCS_HTML} ${DOCSDIR}/html/ .endif -.if !defined(NOPORTEXAMPLES) +.if ${PORT_OPTIONS:MEXAMPLES} @${ECHO_MSG} "Installing demo data..." @${MKDIR} ${EXAMPLESDIR} ${INSTALL_SCRIPT} \ _______________________________________________ svn-ports-all@freebsd.org mailing list http://lists.freebsd.org/mailman/listinfo/svn-ports-all To unsubscribe, send any mail to "svn-ports-all-unsubscribe@freebsd.org" |
