Bug 199066

Summary: [maintainer update] biology/hmmer: Clean up and adopt
Product: Ports & Packages Reporter: Jason W. Bacon <jwb>
Component: Individual Port(s)Assignee: Dmitry Marakasov <amdmi3>
Status: Closed FIXED    
Severity: Affects Some People CC: amdmi3
Priority: ---    
Version: Latest   
Hardware: Any   
OS: Any   
Attachments:
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Description Jason W. Bacon freebsd_committer freebsd_triage 2015-03-31 13:58:05 UTC
Created attachment 155058 [details]
Unified diff

Remove deprecated PVM support (to be replaced by MPI in the future).

Add --with-sse for x86 architectures, without which hmmerscan runs about 100x slower and leaks memory.
Comment 1 commit-hook freebsd_committer freebsd_triage 2015-04-02 15:42:06 UTC
A commit references this bug:

Author: amdmi3
Date: Thu Apr  2 15:41:32 UTC 2015
New revision: 383013
URL: https://svnweb.freebsd.org/changeset/ports/383013

Log:
  - Remove deprecated option
  - Tweak compiler flags
  - Add LICENSE
  - Pass maintainership to submitter

  PR:		199066
  Submitted by:	jwbacon@tds.net

Changes:
  head/biology/hmmer/Makefile