Bug 205524
| Summary: | biology/htslib: Update to 1.3 | ||||||||||
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| Product: | Ports & Packages | Reporter: | cartwright | ||||||||
| Component: | Individual Port(s) | Assignee: | Jason Unovitch <junovitch> | ||||||||
| Status: | Closed FIXED | ||||||||||
| Severity: | Affects Some People | CC: | junovitch | ||||||||
| Priority: | --- | Keywords: | easy, patch, patch-ready | ||||||||
| Version: | Latest | Flags: | cartwright:
maintainer-feedback+
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| Hardware: | Any | ||||||||||
| OS: | Any | ||||||||||
| Bug Depends on: | |||||||||||
| Bug Blocks: | 205525, 205526 | ||||||||||
| Attachments: |
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Created attachment 164512 [details]
poudriere testport output for releng_10_2
Created attachment 164513 [details]
poudriere testport output for releng_9_3
Comment on attachment 164511 [details]
Patch to upgrade biology/htslib to 1.3
Thanks. Note that you have the ability to approve the patches for ports you're maintainer of.
Everywhere else in ports we use "CURL" for that option. Not as 'libcurl' or lower case. Otherwise with that small change I think the patch looks good and I am reviewing the entire batch of patches to commit all at once since they depend on this bug. A commit references this bug: Author: junovitch Date: Fri Dec 25 01:31:11 UTC 2015 New revision: 404398 URL: https://svnweb.freebsd.org/changeset/ports/404398 Log: biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3 - Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require version 1.3 of htslib. - Add CURL option to htslib - Add TEST_TARGET with perl and bash dependencies for testing - Tidy up spacing and pkg-message's PR: 205524 PR: 205525 PR: 205526 Submitted by: cartwright@asu.edu (maintainer) Changes: head/biology/bcftools/Makefile head/biology/bcftools/distinfo head/biology/bcftools/files/patch-Makefile head/biology/bcftools/files/patch-plugins_fixploidy.mk head/biology/bcftools/files/patch-plugins_vcf2sex.mk head/biology/bcftools/files/patch-prob1.c head/biology/bcftools/files/patch-test_test.pl head/biology/bcftools/files/pkg-message.in head/biology/bcftools/pkg-plist head/biology/htslib/Makefile head/biology/htslib/distinfo head/biology/htslib/files/patch-Makefile head/biology/htslib/files/patch-configure.ac head/biology/htslib/files/patch-cram_cram__io.c head/biology/htslib/files/patch-hfile__libcurl.c head/biology/htslib/pkg-plist head/biology/samtools/Makefile head/biology/samtools/distinfo head/biology/samtools/files/ax_with_curses.m4 head/biology/samtools/files/ax_with_htslib.m4 head/biology/samtools/files/patch-Makefile head/biology/samtools/files/patch-configure.ac head/biology/samtools/files/patch-dict.c head/biology/samtools/files/patch-errmod.c head/biology/samtools/files/patch-test_test.pl head/biology/samtools/files/pkg-message.in head/biology/samtools/pkg-plist |
Created attachment 164511 [details] Patch to upgrade biology/htslib to 1.3 Update biology/htslib to version 1.3. Add libcurl support. Add make test support.