Bug 205526
| Summary: | biology/bcftools: Update to 1.3 | ||||||||||
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| Product: | Ports & Packages | Reporter: | cartwright | ||||||||
| Component: | Individual Port(s) | Assignee: | Jason Unovitch <junovitch> | ||||||||
| Status: | Closed FIXED | ||||||||||
| Severity: | Affects Some People | CC: | junovitch | ||||||||
| Priority: | --- | Keywords: | easy, patch, patch-ready | ||||||||
| Version: | Latest | Flags: | cartwright:
maintainer-feedback+
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| Hardware: | Any | ||||||||||
| OS: | Any | ||||||||||
| Bug Depends on: | 205524 | ||||||||||
| Bug Blocks: | |||||||||||
| Attachments: |
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Description
cartwright
2015-12-22 23:26:43 UTC
Created attachment 164520 [details]
poudriere testport output for releng_10_2
Created attachment 164521 [details]
poudriere testport output for releng_9_3
Comment on attachment 164519 [details]
Patch to upgrade biology/bcftools to 1.3
Thanks. Note that you have the ability to approve the patches for ports you're maintainer of.
A commit references this bug: Author: junovitch Date: Fri Dec 25 01:31:11 UTC 2015 New revision: 404398 URL: https://svnweb.freebsd.org/changeset/ports/404398 Log: biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3 - Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require version 1.3 of htslib. - Add CURL option to htslib - Add TEST_TARGET with perl and bash dependencies for testing - Tidy up spacing and pkg-message's PR: 205524 PR: 205525 PR: 205526 Submitted by: cartwright@asu.edu (maintainer) Changes: head/biology/bcftools/Makefile head/biology/bcftools/distinfo head/biology/bcftools/files/patch-Makefile head/biology/bcftools/files/patch-plugins_fixploidy.mk head/biology/bcftools/files/patch-plugins_vcf2sex.mk head/biology/bcftools/files/patch-prob1.c head/biology/bcftools/files/patch-test_test.pl head/biology/bcftools/files/pkg-message.in head/biology/bcftools/pkg-plist head/biology/htslib/Makefile head/biology/htslib/distinfo head/biology/htslib/files/patch-Makefile head/biology/htslib/files/patch-configure.ac head/biology/htslib/files/patch-cram_cram__io.c head/biology/htslib/files/patch-hfile__libcurl.c head/biology/htslib/pkg-plist head/biology/samtools/Makefile head/biology/samtools/distinfo head/biology/samtools/files/ax_with_curses.m4 head/biology/samtools/files/ax_with_htslib.m4 head/biology/samtools/files/patch-Makefile head/biology/samtools/files/patch-configure.ac head/biology/samtools/files/patch-dict.c head/biology/samtools/files/patch-errmod.c head/biology/samtools/files/patch-test_test.pl head/biology/samtools/files/pkg-message.in head/biology/samtools/pkg-plist Committed. Thanks! |
