Summary: | [NEW PORT] biology/bowtie2: Ultrafast, memory-efficient short read aligner | ||||||
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Product: | Ports & Packages | Reporter: | Jason W. Bacon <jwb> | ||||
Component: | Individual Port(s) | Assignee: | Raphael Kubo da Costa <rakuco> | ||||
Status: | Closed FIXED | ||||||
Severity: | Affects Some People | CC: | rakuco | ||||
Priority: | --- | ||||||
Version: | Latest | ||||||
Hardware: | amd64 | ||||||
OS: | Any | ||||||
Attachments: |
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Description
Jason W. Bacon
2016-03-11 16:45:29 UTC
Created attachment 168262 [details]
Shar archive
A commit references this bug: Author: rakuco Date: Wed Mar 23 11:22:40 UTC 2016 New revision: 411698 URL: https://svnweb.freebsd.org/changeset/ports/411698 Log: New port: biology/bowtie2. Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. This is Bowtie version 2, which will need to coexists with Bowtie 1 for the foreseeable future. Both are required by certain genomics pipelines, in some cases (e.g. Trinity) by the same pipeline. WWW: https://github.com/BenLangmead/bowtie2 PR: 207908 Submitted by: Jason Bacon <bacon4000@gmail.com> Changes: head/biology/Makefile head/biology/bowtie2/ head/biology/bowtie2/Makefile head/biology/bowtie2/distinfo head/biology/bowtie2/files/ head/biology/bowtie2/files/patch-Makefile head/biology/bowtie2/pkg-descr head/biology/bowtie2/pkg-plist Committed, thanks. |