Bug 209535

Summary: [MAINTAINER UPDATE]: biology/paml: upgrade to version 4.9a
Product: Ports & Packages Reporter: Joseph Mingrone <jrm>
Component: Individual Port(s)Assignee: Dmitry Marakasov <amdmi3>
Status: Closed FIXED    
Severity: Affects Only Me    
Priority: ---    
Version: Latest   
Hardware: Any   
OS: Any   
Attachments:
Description Flags
svn patch to upgrade paml to version 4.9a none

Description Joseph Mingrone freebsd_committer 2016-05-16 02:50:49 UTC
Created attachment 170338 [details]
svn patch to upgrade paml to version 4.9a

portlint: OK [1]

testport: OK (poudriere: 9.3-RELEASE-p36,  i386)  [2]
testport: OK (poudriere: 9.3-RELEASE-p30,  amd64) [3]
testport: OK (poudriere: 10.1-RELEASE-p17, i386)  [4]
testport: OK (poudriere: 10.1-RELEASE-p17, amd64) [5]

[1] WARN: Makefile: Consider defining LICENSE.
I don't see any license define for PAML.  In Readme.txt in the top level of the source code, it says "PAML is distributed free of charge for academic use only."

[2] http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-05-15_23h36m09s/logs/paml-4.9a.log

[3] http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-05-15_23h36m21s/logs/paml-4.9a.log

[4] http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-05-15_23h36m31s/logs/paml-4.9a.log

[5] http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-05-15_23h42m43s/logs/paml-4.9a.log
Comment 1 commit-hook freebsd_committer 2016-05-16 16:11:26 UTC
A commit references this bug:

Author: amdmi3
Date: Mon May 16 16:10:36 UTC 2016
New revision: 415338
URL: https://svnweb.freebsd.org/changeset/ports/415338

Log:
  - Update to 4.9a
  - While here, simplify WRKSRC and use options helpers

  PR:		209535
  Submitted by:	jrm@ftfl.ca (maintainer)

Changes:
  head/biology/paml/Makefile
  head/biology/paml/distinfo