Bug 214997
| Summary: | biology/ncbi-blast+: updating to 2.5.0 | ||||||||
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| Product: | Ports & Packages | Reporter: | Motomichi Matsuzaki <mzaki> | ||||||
| Component: | Individual Port(s) | Assignee: | Wen Heping <wen> | ||||||
| Status: | Closed FIXED | ||||||||
| Severity: | Affects Only Me | CC: | jrm, wen | ||||||
| Priority: | --- | ||||||||
| Version: | Latest | ||||||||
| Hardware: | Any | ||||||||
| OS: | Any | ||||||||
| Attachments: |
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build failed with : ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR Error: Missing: lib/libtrackmgrgridcli-static.a Error: Missing: lib/libtrackmgrgridcli.a ===> Error: Plist issues found. *** Error code 1 Created attachment 177717 [details]
svn diff (corrected for plist problem)
(In reply to Wen Heping from comment #1) oops, sorry for that. A commit references this bug: Author: wen Date: Mon Dec 19 03:26:54 UTC 2016 New revision: 428903 URL: https://svnweb.freebsd.org/changeset/ports/428903 Log: - Update to 2.5.0 PR: 214997 Submitted by: mzaki@e-mail.ne.jp Approved by: maintainer(timeout, > 14 days) Changes: head/biology/ncbi-blast+/Makefile head/biology/ncbi-blast+/distinfo head/biology/ncbi-blast+/files/patch-src_build-system_Makefile.in.top head/biology/ncbi-blast+/files/patch-src_build-system_configure head/biology/ncbi-blast+/pkg-plist After this update, the build failed in an 11.0-RELEASE-p1 poudriere jail. http://pkg.awarnach.mathstat.dal.ca/data/11amd64-default/2016-12-19_00h22m27s/logs/errors/ncbi-blast+-2.5.0.log (In reply to Joseph Mingrone from comment #5) Thank your reporter. But here I can build it on FreeBSD-10,11,12. I shall look into it later. wen I'll try and dig deeper as well, although it may take a few day before I can get to it. A commit references this bug: Author: jrm Date: Thu Dec 22 16:49:17 UTC 2016 New revision: 429170 URL: https://svnweb.freebsd.org/changeset/ports/429170 Log: biology/ncbi-blast+: Add MAKE_JOBS_UNSAFE PR: 214997 Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D8882 Changes: head/biology/ncbi-blast+/Makefile |
Created attachment 177596 [details] svn diff updating to 2.5.0 Added a patch for src/build-system/Makefile.in.top