Bug 216618

Summary: biology/plinkseq: fails to build with clang 4.0
Product: Ports & Packages Reporter: Jan Beich <jbeich>
Component: Individual Port(s)Assignee: Jan Beich <jbeich>
Status: Closed FIXED    
Severity: Affects Only Me CC: jwb
Priority: --- Keywords: needs-patch
Version: LatestFlags: bugzilla: maintainer-feedback? (jwb)
Hardware: Any   
OS: Any   
See Also: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216075
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216074
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216072
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216016
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=215861
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216015
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216046
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216051
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216052
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216056
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216058
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216019
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216159
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216176
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216194
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216197
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216198
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216199
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216200
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216203
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216206
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216211
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216213
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216214
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216215
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216216
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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216218
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216221
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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216235
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216253
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216354
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216355
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216356
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216357
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216358
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216076
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216615
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216617
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216619
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216620
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216621
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216622
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216623
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216624
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216626
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216632
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216629
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216631
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216630
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216627
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216633
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216634
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216635
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216636
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216637
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216638
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216639
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216640
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216641
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216642
Bug Depends on:    
Bug Blocks: 216008    
Attachments:
Description Flags
Unified diff jwb: maintainer-approval+

Description Jan Beich freebsd_committer freebsd_triage 2017-01-30 22:22:31 UTC 
sources/lib/r8lib.cpp:31831:15: error: ordered comparison between pointer and zero ('int *' and 'int')
    if ( i_hi < 0 )
         ~~~~ ^ ~

build log: http://package18.nyi.freebsd.org/data/headamd64PR216008-default/2017-01-29_16h09m05s/logs/errors/plinkseq-0.10.log
regressed by: https://github.com/llvm-mirror/clang/commit/4b6ad14285f3
Comment 1 Jason W. Bacon freebsd_committer freebsd_triage 2017-02-20 16:23:04 UTC 
Created attachment 180168 [details]
Unified diff

Please try this patch.  Thanks...
Comment 2 commit-hook freebsd_committer freebsd_triage 2017-02-27 14:10:08 UTC 
A commit references this bug:

Author: jbeich
Date: Mon Feb 27 14:09:25 UTC 2017
New revision: 434941
URL: https://svnweb.freebsd.org/changeset/ports/434941

Log:
  biology/plinkseq: unbreak with clang 4.0

  PR:		216618
  Submitted by:	Jason Bacon <bacon4000@gmail.com> (maintainer)

Changes:
  head/biology/plinkseq/Makefile
  head/biology/plinkseq/files/
  head/biology/plinkseq/files/patch-sources_plinkseq_sources_lib_r8lib.cpp