Bug 217269

Description Jochen Neumeister 2017-02-21 11:35:46 UTC

Created attachment 180183 [details]
Patch

http://pythonhosted.org/pyteomics/changelog.html#id1

        Add selenocysteine (“U”) and pyrrolysine (“O”) to pyteomics.mass.std_aa_mass and pyteomics.mass.std_aa_comp.
        An optional parameter encoding is now accepted by text file readers (pyteomics.mgf.read() and pyteomics.fasta.read()). This can be useful for MGF files with non-ASCII spectrum titles or comments.
        New function pyteomics.mass.mass.isotopologues().
        Performance improvements in pyteomics.electrochem.pI().
        Fix the issue in pyteomics.xml which resulted in very long processing times for indexed XML files with a byte ordering mark (BOM).
        Support all standard and non-standard data array names in pyteomics.mzml.
        Change default value of retrieve_refs in pyteomics.mzid.read() to True.
        Preserve unit information extracted from cvParam tags in PSI XML files.
        Fix in pyteomics.mzxml, other minor fixes.


poudriere build fine for:
10.3 amd + i386
11.0 amd + i386
12-current amd + i386 (r313761)

portlint is also fine.


Cheers
jochen