Bug 218745
| Summary: | [NEW PORT] biology/py-pysam: Python module for reading, manipulating and writing genomic data sets | ||||||
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| Product: | Ports & Packages | Reporter: | Yuri Victorovich <yuri> | ||||
| Component: | Individual Port(s) | Assignee: | Martin Wilke <miwi> | ||||
| Status: | Closed FIXED | ||||||
| Severity: | Affects Only Me | CC: | miwi | ||||
| Priority: | --- | ||||||
| Version: | Latest | ||||||
| Hardware: | Any | ||||||
| OS: | Any | ||||||
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A commit references this bug: Author: miwi Date: Sat May 6 06:05:25 UTC 2017 New revision: 440231 URL: https://svnweb.freebsd.org/changeset/ports/440231 Log: pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing. This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats. WWW: https://pypi.python.org/pypi/pysam PR: 218745 Submitted by: Yuri Victorovich <yuri@rawbw.com> Changes: head/biology/Makefile head/biology/py-pysam/ head/biology/py-pysam/Makefile head/biology/py-pysam/distinfo head/biology/py-pysam/files/ head/biology/py-pysam/files/patch-setup.py head/biology/py-pysam/pkg-descr |
Created attachment 181883 [details] shar Passes poudriere